ISRso6

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 2064 bp

Ends


IR Length : 21/26

IRL : TGTCACACGCAGTTGTAAATTGATACGCGGACGCACTTTGGAATTGATAC
IRR : TGTCAAACGCAGTCTCAAGTTGATACAGATTCAGGTGCAAACGCATTTGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCAGCGCCGCCTTCGAGGGTGTC4

DNA sequence

TGTCACACGCAGTTGTAAATTGATACGCGGACGCACTTTGGAATTGATACACCTCGTTGTAGGGTCGTCCTTTTTGGGCGCCCGTGATCAGCTACGAGGA
TTACATGGAAGTACAGATTCTGCGTCGCCAGGGCTGCAGTTTGCGTGCGATCGCAACCGAGACTGGCATGGCCGTGAACACCATCAGGAAGTACCTGGTG
TCCGGCGCGCCCGAGCGCAAGCCACGCGAGCCGGTGGTGGGCAAGTTGGAGCCGTTCAAGGCCTTCATACAGTCCCGCGTTGACGCCGCACGTCCGGACT
GGATTCCGGCGACGGTGCTGTTGCGCGAGATCGAGGAGCGTGGGTACACCGGCAAGCTGCGCATTGTTCAGGAATACCTGCAAACGCTGCGGCCCGCCAG
CCGGCCCGATCCGGTTGTGCGGTTCGAGACGGAACCCGGCCAGCAAATGCAGATGGATTGGATCGAATTCCGCAAGACCGGGCACAAGCACGGCATGCTG
GCGGCATTCGTTGCCACGTTGGGATACAGCCGAGCCAGCTATGTCGAGTTCGTTTCCGACATGCGCCTGGAGACCTTGCTCACCTGCCATGTGCGTGCAT
TCGATGCCTTTGGCGGAGTCACCAAGGAGATCCTGTACGACAACATGAAGACGGTGATCCTGCAGCGCAATGCCTACGGTAAGCAACAGCATCGGTACCA
ACCAGGCTTTGCCGACTTCGCCAAGCACTATGGGTTCGCGCCGCGCGTGTGCAAGCCCTACCGGGCGAAGACGAAGGGCAAAGTCGAGCGGATGAACGGC
TACCTGCGCTACAGCTTCTGGGTCCCGTTGGCTTCCAAGCTCAAGCAGATCGGCTTGGCTGCGGACAAGGATCTGTGCAATCAACAGGTTGGCCTCTGGC
TGCGGGATGTGGCCAATGTCCGCGTTCACGGCACGACGAAGCGCGTTCCCGTGGACGTCCTGAGAGAGGAACGACCGCATCTGCTGCCAACGCCGGCACT
CTATGCCGGGCGATCGGTGCGCGCCGGTGCAACGCCTCACGAGACGCCCAAGCCGGCCTCCAGGTTTGCGACGCCGGACTGGCATGTCTGCTTGCAGCAC
CCGCTGTCCGTCTACGATTCCTTCTGCCAGCAGGGAGTCGCCGCATGACGCCTCAGCTCGAACGGCTCACCGTCCTGTGCCAGCAGCTCAACCTGCAGCA
CCTTCCCACACAGCTCGCCCACCTGGGCCAGATGGCGGCCAAGCGGGAGCTCGGCTACCTGGACTTCCTTGAGCACGCCTTGAAGGACGAAGCCATGGCG
CGGGCCGAGCGCATGCGACGAACGCTGACACGATTGGCCGGCTTCCCGGCGATCAAGACCTTGGACGAGTTCGACTTCGAGTTCGCAACCGGCGTGCCGA
AGGCGATGGTCCTGGAGTTGGGCAGCCTTGCATTCGTTGAGCGAGCCGAGAACGTGGTGCTGCTCGGACCTTCCGGCGTGGGGAAGACCCACCTGGCGAT
CGCCCTGGGCTATCGCGCCACGCAGGCCGGCATGCGGACGCGGTTCATCACGGCGGCCGATCTGCTGATGCAACTTGCAGCCGCCCTGCAGCGGAACCAG
CTCGATGTCGCCATCAAGCGCATTGTGAATCCCTACAAGCTCTTGATCGTTGACGAGATGGGCTACCTGCCGATGGACCGAGAACAAGCCAATCTACTGT
TCCAGGTCATTGCTAAGCGGTATGAAACCGGAAGCTTGGTGCTGACGAGCAATCTGCCCTTCGGTCAATGGGATCAGACCTTTGCTGGCGACGCCACGCT
CACTGCCGCTCTGCTAGATCGCCTGCTGCATCACGCGCACGTTGTGCCGATCTCCGGCGACTCGTACCGACTGAAGGAGAAGCGCCAGGCGGGCATGATC
CATCGAATGTCGCTGTCGAATCCTGTGCCCGACGACCTCAAACGCAAACGCATTCCAAAGGAGCCACCGCCCAGCCACCCGATGCAATAACCATCAGAGG
GGGTGTATCAATTTACAAATGCGTTTGCACCTGAATCTGTATCAACTTGAGACTGCGTTTGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa1051148+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVQILRRQGCSLRAIATETGMAVNTIRKYLVSGAPERKPREPVVGKLEPFKAFIQSRVDAARPDWIPATVLLREIEERGYTGKLRIVQEYLQTLRPASR
PDPVVRFETEPGQQMQMDWIEFRKTGHKHGMLAAFVATLGYSRASYVEFVSDMRLETLLTCHVRAFDAFGGVTKEILYDNMKTVILQRNAYGKQQHRYQP
GFADFAKHYGFAPRVCKPYRAKTKGKVERMNGYLRYSFWVPLASKLKQIGLAADKDLCNQQVGLWLRDVANVRVHGTTKRVPVDVLREERPHLLPTPALY
AGRSVRAGATPHETPKPASRFATPDWHVCLQHPLSVYDSFCQQGVAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
846 bp281 aa11451990+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MTPQLERLTVLCQQLNLQHLPTQLAHLGQMAAKRELGYLDFLEHALKDEAMARAERMRRTLTRLAGFPAIKTLDEFDFEFATGVPKAMVLELGSLAFVER
AENVVLLGPSGVGKTHLAIALGYRATQAGMRTRFITAADLLMQLAAALQRNQLDVAIKRIVNPYKLLIVDEMGYLPMDREQANLLFQVIAKRYETGSLVL
TSNLPFGQWDQTFAGDATLTAALLDRLLHHAHVVPISGDSYRLKEKRQAGMIHRMSLSNPVPDDLKRKRIPKEPPPSHPMQ

 

Blast result :
Comments
There are 4 copies of ISRso6 (2 on chromosome and 2 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502