ISRso5
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1159 bp
Ends
IR Length : 11/12
IRL : TGTCCTGTTCCGTTGTTAACTGGTCTAAGTTTACATAGGATGTTGGCATC
IRR : TGTCCCGTTCCGCTAATTCGTTCGCAAAGTCTGCTGAGCTTGGAGAGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CTAG | NNNNNNNNNN | 4 |
DNA sequence
TGTCCTGTTCCGTTGTTAACTGGTCTAAGTTTACATAGGATGTTGGCATCAACGAAACGGGAGATGCCAGCATGCCAATGGGACGGCCGAAGGCGGAACT
GGTGCTGAGCGAGGACGAGCAGACGCAACTGGCTGGGATGGTGCGTTCGCGCAGTATCCCGGCGGCGTTGGTGATGCGTGCGCGCCTTGTCTTGGCGGCG
GCCGCAGGCGAGCCCAACAGTGAGATCGCCGAGCGCCTGCAGCTCACGCGCGCTACGGTGGGCAAATGGCGCGCCCGGTTCCTTGAGCGGCGCATCAATG
GGTTGTACGACGAACTGCGACCCGGCAAGCCGCGTACCATCGACGACGAGCGCGTGGCCGAACTCATCAAGACGACGCTGCATACGAAGCCTGCGGATGG
CTCGACTCACTGGAGTGTGCGCGCGGTGGCGGCCGAGACATCGATCTCGCCTACCAGCGTGCACCGCTATTTCAAGCTGTTGGGGCTGCAACCGCATCGC
AGCGAGACCTTCAAGCTGTCCACCGATGCGTTTTTCATCGAGAAGCTGCGCGACGTGGTGGGGCTGTATCTGAACCCGCCCGAGAATGCATTGGTGCTGT
GCGTGGACGAGAAGAGCCAGTGCCAGGCACTGGAGCGCACTCAGCCGATGCTGCCCATGGGGCTGGGCTATGTCGAAGGCGTCACCCACGACTATGTCCG
CCATGGCACAACGACGCTGTTTGCCGCGCTGAACGTACTCAACGGCGCGGTACTGGCCGAGTGTAAGCCGCGCCATCGGCACCAAGAGTTCCTCGCCTTC
TTGCGCTCGATCGACAAAGCCGTGCCCGCCGACCTCGATGTGCATTGCATCGTGGATAACTACAGCAGCCATAAGCATCCCAAGGTCAAGGCGTGGCTGG
CGGCCCGTCCGCGCTGGCATATGCACTTCATCCCGACCTACAGCTCTTGGCTCAATCAGGTCGAACGCTTCTTCGCGATCATTACCGACAAGGCCATTCG
CCGTGGCTCGTTCACGTCGGTTAAGGAACTGGTTCAGAAGATCGATCACTTCGTCGCTCACTACAACCAGAACTGCAAACCATTCGCTTGGACCGCGACC
GCTGATTCAATCCTCTCCAAGCTCAGCAGACTTTGCGAACGAATTAGCGGAACGGGACA
GGTGCTGAGCGAGGACGAGCAGACGCAACTGGCTGGGATGGTGCGTTCGCGCAGTATCCCGGCGGCGTTGGTGATGCGTGCGCGCCTTGTCTTGGCGGCG
GCCGCAGGCGAGCCCAACAGTGAGATCGCCGAGCGCCTGCAGCTCACGCGCGCTACGGTGGGCAAATGGCGCGCCCGGTTCCTTGAGCGGCGCATCAATG
GGTTGTACGACGAACTGCGACCCGGCAAGCCGCGTACCATCGACGACGAGCGCGTGGCCGAACTCATCAAGACGACGCTGCATACGAAGCCTGCGGATGG
CTCGACTCACTGGAGTGTGCGCGCGGTGGCGGCCGAGACATCGATCTCGCCTACCAGCGTGCACCGCTATTTCAAGCTGTTGGGGCTGCAACCGCATCGC
AGCGAGACCTTCAAGCTGTCCACCGATGCGTTTTTCATCGAGAAGCTGCGCGACGTGGTGGGGCTGTATCTGAACCCGCCCGAGAATGCATTGGTGCTGT
GCGTGGACGAGAAGAGCCAGTGCCAGGCACTGGAGCGCACTCAGCCGATGCTGCCCATGGGGCTGGGCTATGTCGAAGGCGTCACCCACGACTATGTCCG
CCATGGCACAACGACGCTGTTTGCCGCGCTGAACGTACTCAACGGCGCGGTACTGGCCGAGTGTAAGCCGCGCCATCGGCACCAAGAGTTCCTCGCCTTC
TTGCGCTCGATCGACAAAGCCGTGCCCGCCGACCTCGATGTGCATTGCATCGTGGATAACTACAGCAGCCATAAGCATCCCAAGGTCAAGGCGTGGCTGG
CGGCCCGTCCGCGCTGGCATATGCACTTCATCCCGACCTACAGCTCTTGGCTCAATCAGGTCGAACGCTTCTTCGCGATCATTACCGACAAGGCCATTCG
CCGTGGCTCGTTCACGTCGGTTAAGGAACTGGTTCAGAAGATCGATCACTTCGTCGCTCACTACAACCAGAACTGCAAACCATTCGCTTGGACCGCGACC
GCTGATTCAATCCTCTCCAAGCTCAGCAGACTTTGCGAACGAATTAGCGGAACGGGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 363 aa | 72 | 1163 | + | No |
Chemistry : DDE
ORF sequence :
MPMGRPKAELVLSEDEQTQLAGMVRSRSIPAALVMRARLVLAAAAGEPNSEIAERLQLTRATVGKWRARFLERRINGLYDELRPGKPRTIDDERVAELIK
TTLHTKPADGSTHWSVRAVAAETSISPTSVHRYFKLLGLQPHRSETFKLSTDAFFIEKLRDVVGLYLNPPENALVLCVDEKSQCQALERTQPMLPMGLGY
VEGVTHDYVRHGTTTLFAALNVLNGAVLAECKPRHRHQEFLAFLRSIDKAVPADLDVHCIVDNYSSHKHPKVKAWLAARPRWHMHFIPTYSSWLNQVERF
FAIITDKAIRRGSFTSVKELVQKIDHFVAHYNQNCKPFAWTATADSILSKLSRLCERISGTGH
TTLHTKPADGSTHWSVRAVAAETSISPTSVHRYFKLLGLQPHRSETFKLSTDAFFIEKLRDVVGLYLNPPENALVLCVDEKSQCQALERTQPMLPMGLGY
VEGVTHDYVRHGTTTLFAALNVLNGAVLAECKPRHRHQEFLAFLRSIDKAVPADLDVHCIVDNYSSHKHPKVKAWLAARPRWHMHFIPTYSSWLNQVERF
FAIITDKAIRRGSFTSVKELVQKIDHFVAHYNQNCKPFAWTATADSILSKLSRLCERISGTGH
Blast result :
Comments
Note that for all copies of ISRso5, the last bp of the ORFs stop codon correspond to the last bp of the IRR.
There are 9 copies of ISRso5 (5 on chromosome and 4 on megaplasmid).
There are 9 copies of ISRso5 (5 on chromosome and 4 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502