ISRso5

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1159 bp

Ends


IR Length : 11/12

IRL : TGTCCTGTTCCGTTGTTAACTGGTCTAAGTTTACATAGGATGTTGGCATC
IRR : TGTCCCGTTCCGCTAATTCGTTCGCAAAGTCTGCTGAGCTTGGAGAGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCTAGNNNNNNNNNN4

DNA sequence

TGTCCTGTTCCGTTGTTAACTGGTCTAAGTTTACATAGGATGTTGGCATCAACGAAACGGGAGATGCCAGCATGCCAATGGGACGGCCGAAGGCGGAACT
GGTGCTGAGCGAGGACGAGCAGACGCAACTGGCTGGGATGGTGCGTTCGCGCAGTATCCCGGCGGCGTTGGTGATGCGTGCGCGCCTTGTCTTGGCGGCG
GCCGCAGGCGAGCCCAACAGTGAGATCGCCGAGCGCCTGCAGCTCACGCGCGCTACGGTGGGCAAATGGCGCGCCCGGTTCCTTGAGCGGCGCATCAATG
GGTTGTACGACGAACTGCGACCCGGCAAGCCGCGTACCATCGACGACGAGCGCGTGGCCGAACTCATCAAGACGACGCTGCATACGAAGCCTGCGGATGG
CTCGACTCACTGGAGTGTGCGCGCGGTGGCGGCCGAGACATCGATCTCGCCTACCAGCGTGCACCGCTATTTCAAGCTGTTGGGGCTGCAACCGCATCGC
AGCGAGACCTTCAAGCTGTCCACCGATGCGTTTTTCATCGAGAAGCTGCGCGACGTGGTGGGGCTGTATCTGAACCCGCCCGAGAATGCATTGGTGCTGT
GCGTGGACGAGAAGAGCCAGTGCCAGGCACTGGAGCGCACTCAGCCGATGCTGCCCATGGGGCTGGGCTATGTCGAAGGCGTCACCCACGACTATGTCCG
CCATGGCACAACGACGCTGTTTGCCGCGCTGAACGTACTCAACGGCGCGGTACTGGCCGAGTGTAAGCCGCGCCATCGGCACCAAGAGTTCCTCGCCTTC
TTGCGCTCGATCGACAAAGCCGTGCCCGCCGACCTCGATGTGCATTGCATCGTGGATAACTACAGCAGCCATAAGCATCCCAAGGTCAAGGCGTGGCTGG
CGGCCCGTCCGCGCTGGCATATGCACTTCATCCCGACCTACAGCTCTTGGCTCAATCAGGTCGAACGCTTCTTCGCGATCATTACCGACAAGGCCATTCG
CCGTGGCTCGTTCACGTCGGTTAAGGAACTGGTTCAGAAGATCGATCACTTCGTCGCTCACTACAACCAGAACTGCAAACCATTCGCTTGGACCGCGACC
GCTGATTCAATCCTCTCCAAGCTCAGCAGACTTTGCGAACGAATTAGCGGAACGGGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa721163+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPMGRPKAELVLSEDEQTQLAGMVRSRSIPAALVMRARLVLAAAAGEPNSEIAERLQLTRATVGKWRARFLERRINGLYDELRPGKPRTIDDERVAELIK
TTLHTKPADGSTHWSVRAVAAETSISPTSVHRYFKLLGLQPHRSETFKLSTDAFFIEKLRDVVGLYLNPPENALVLCVDEKSQCQALERTQPMLPMGLGY
VEGVTHDYVRHGTTTLFAALNVLNGAVLAECKPRHRHQEFLAFLRSIDKAVPADLDVHCIVDNYSSHKHPKVKAWLAARPRWHMHFIPTYSSWLNQVERF
FAIITDKAIRRGSFTSVKELVQKIDHFVAHYNQNCKPFAWTATADSILSKLSRLCERISGTGH

 

Blast result :
Comments
Note that for all copies of ISRso5, the last bp of the ORFs stop codon correspond to the last bp of the IRR.
There are 9 copies of ISRso5 (5 on chromosome and 4 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502