ISRso19
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Af450275 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1956 bp
Ends
IR Length : 10/12
IRL : TGTTAGCGCCGATGTAAAACTGACCCACCCGCCGAAGTAAACCTGACCCA
IRR : TGTCAACGCCGACCGAATTCTGACCCGCCTTTCGGTGTTTCGCCGAAGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTTAGCGCCGATGTAAAACTGACCCACCCGCCGAAGTAAACCTGACCCACCTGGGAGAGGATGGCGGCTTTTGCCGCCGATGCTGACTCAGGAGCAAGC
AGTGGAAATCAAGGTATTGGCAAGACGGGGTACGGCGGTACGGGAGATAGCGCGGCAAACGGGTCTGTCGCGCAACACGGTGCGGCGCTATCTGCGCGAC
GGGCAAGCCGGCCGTTACAGGCAGCGCGAGCCTCGCCCGACGAAGCTCGACCCGTTCAAGGGCTATCTGCTCGAACGCGTGGCGGCCGCGCGGCCGCACT
GGATTCCGGCAACGGTGCTGCTGCGGGAACTGCAGCAGGCCGGCTACGAAGGCGGCGTCAGCCAGCTCAAGGCATTCCTGGCACCGCATAAGCGTGTGGC
AGCCGAGCCGGTGGTGCGCTTCGAGACCCCTCCGGGCAAGCAGATGCAGGCCGACTTCACGGTCATCCGCCGTGGCCGCGCACCGCTGCTGGCGCTGGTG
GCAACGCTGGGATACAGCCGTGCGAGCTTCGTGCGTTTCACCGCTGGCGAGGACGCCACGACGTTGTGCGAGTGCCTGCGCGAAGCATTCGTCTACTTCG
GCGGCACGCCCGAGCAGGTGCTGTTCGATAACGCAAAGTCCGTGGTTATCGAGCGTGATGCGTTTGGCGTTGGCCAGCACCGATGGAACACACAGTTGCT
CGCACTGGCCGAGACCTACGGCTTCACGCCGAAGGTGTGCCAGCCCTATCGTGCCAAGACCAAGGGCAAGGTCGAGCGCTTCAATCGCTATCTGAAGGAG
AGCTTCGTGGTGCCGCTGGCGACCACGCTCAAGCAGGCGGGGCTGAAGCTGGACGTCGACGCTGCTAATGCACGCATCGGCCGGTGGCTTGCGGAAGTCG
CCAACGTGCGCGTGCATGCCACCACGCATGAGCGGCCGGCTGCAAGGCTGGGCACTGAGCAGGTAGCGCTGCTGCCATTGCCCACACCGACGTCGATGCC
AATGCCTGTGGTCTCGAAGCTGCGTCGTGTGCTGCCACGCGAGAGCCTGCAGCATCCGCTGGCCGTGTATGACGCGTTGCTGGAGGTGGCCGCATGAATC
TGCAGCATGAACGGATTGACGGCCTATGCTCGCAACTCAAGCTCGACCGTATCGCCAGCGATTGGGGAGCGCTCGCGCAGCACGCTGCGACGACCGACGC
GAGCCTGGCTGACTTCCTGGAGCAACTGCTGCAGGCCGAACTCGGCGCACGCGAGGAGCGCAAGCGCCAGACGCTCACGAAGCTCGCCTCACTGCCGGGT
ATCAAGACGCTGGAGCAATATGACTTCGGCTTCGCCAGCGGTGCCCCGCGAGCGCAGATACAGGAGCTGGCAAGCCTGGCGTTCATCGAGCGCGCCGAGA
ATGTCGTGCTGCTTGGGCCATCCGGCGTCGGCAAGACGCACATCGCCAGTGCGCTGGCCTACCGCGCGACGCAGGCGGGCATCAAGACGCGCTTCATCAC
GGCCGCCGACCTGATGATGCAACTGGCGACGGCGCGCCAACAGAACCGCTTGCGGGAGTTCTTCAACCGCGCAGTCATCGGGCCGAGGTTGCTGGTCATC
GACGAAATCGGTTACCTGCCGTTCGGGCGTGAAGAGGCAGACCTGTTCTTCAACGTCGTCGCCAAGCGTTACGAGCGCGGCGCCATCGTGTTGACGAGCA
ACCTGCCGTTCACGCAGTGGGCCACTGCCTTCGCCGACGACCAGACGTTGACGGCAGCCATGCTCGACCGGCTCTTGCATCACGCGCACATCGTGCAAAT
CAGCGGCGAGAGTTACCGCCTCAAGGACAAGCGCAAGGCAGGGCAAACGTCGACGCGGGCAAGCGCGAAAGCAGCCGCGTGACACAGGACCCGGGTGGGT
CAGATTTACTTCGGCGAAACACCGAAAGGCGGGTCAGAATTCGGTCGGCGTTGACA
AGTGGAAATCAAGGTATTGGCAAGACGGGGTACGGCGGTACGGGAGATAGCGCGGCAAACGGGTCTGTCGCGCAACACGGTGCGGCGCTATCTGCGCGAC
GGGCAAGCCGGCCGTTACAGGCAGCGCGAGCCTCGCCCGACGAAGCTCGACCCGTTCAAGGGCTATCTGCTCGAACGCGTGGCGGCCGCGCGGCCGCACT
GGATTCCGGCAACGGTGCTGCTGCGGGAACTGCAGCAGGCCGGCTACGAAGGCGGCGTCAGCCAGCTCAAGGCATTCCTGGCACCGCATAAGCGTGTGGC
AGCCGAGCCGGTGGTGCGCTTCGAGACCCCTCCGGGCAAGCAGATGCAGGCCGACTTCACGGTCATCCGCCGTGGCCGCGCACCGCTGCTGGCGCTGGTG
GCAACGCTGGGATACAGCCGTGCGAGCTTCGTGCGTTTCACCGCTGGCGAGGACGCCACGACGTTGTGCGAGTGCCTGCGCGAAGCATTCGTCTACTTCG
GCGGCACGCCCGAGCAGGTGCTGTTCGATAACGCAAAGTCCGTGGTTATCGAGCGTGATGCGTTTGGCGTTGGCCAGCACCGATGGAACACACAGTTGCT
CGCACTGGCCGAGACCTACGGCTTCACGCCGAAGGTGTGCCAGCCCTATCGTGCCAAGACCAAGGGCAAGGTCGAGCGCTTCAATCGCTATCTGAAGGAG
AGCTTCGTGGTGCCGCTGGCGACCACGCTCAAGCAGGCGGGGCTGAAGCTGGACGTCGACGCTGCTAATGCACGCATCGGCCGGTGGCTTGCGGAAGTCG
CCAACGTGCGCGTGCATGCCACCACGCATGAGCGGCCGGCTGCAAGGCTGGGCACTGAGCAGGTAGCGCTGCTGCCATTGCCCACACCGACGTCGATGCC
AATGCCTGTGGTCTCGAAGCTGCGTCGTGTGCTGCCACGCGAGAGCCTGCAGCATCCGCTGGCCGTGTATGACGCGTTGCTGGAGGTGGCCGCATGAATC
TGCAGCATGAACGGATTGACGGCCTATGCTCGCAACTCAAGCTCGACCGTATCGCCAGCGATTGGGGAGCGCTCGCGCAGCACGCTGCGACGACCGACGC
GAGCCTGGCTGACTTCCTGGAGCAACTGCTGCAGGCCGAACTCGGCGCACGCGAGGAGCGCAAGCGCCAGACGCTCACGAAGCTCGCCTCACTGCCGGGT
ATCAAGACGCTGGAGCAATATGACTTCGGCTTCGCCAGCGGTGCCCCGCGAGCGCAGATACAGGAGCTGGCAAGCCTGGCGTTCATCGAGCGCGCCGAGA
ATGTCGTGCTGCTTGGGCCATCCGGCGTCGGCAAGACGCACATCGCCAGTGCGCTGGCCTACCGCGCGACGCAGGCGGGCATCAAGACGCGCTTCATCAC
GGCCGCCGACCTGATGATGCAACTGGCGACGGCGCGCCAACAGAACCGCTTGCGGGAGTTCTTCAACCGCGCAGTCATCGGGCCGAGGTTGCTGGTCATC
GACGAAATCGGTTACCTGCCGTTCGGGCGTGAAGAGGCAGACCTGTTCTTCAACGTCGTCGCCAAGCGTTACGAGCGCGGCGCCATCGTGTTGACGAGCA
ACCTGCCGTTCACGCAGTGGGCCACTGCCTTCGCCGACGACCAGACGTTGACGGCAGCCATGCTCGACCGGCTCTTGCATCACGCGCACATCGTGCAAAT
CAGCGGCGAGAGTTACCGCCTCAAGGACAAGCGCAAGGCAGGGCAAACGTCGACGCGGGCAAGCGCGAAAGCAGCCGCGTGACACAGGACCCGGGTGGGT
CAGATTTACTTCGGCGAAACACCGAAAGGCGGGTCAGAATTCGGTCGGCGTTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 81 | 1097 | + | No |
Chemistry : DDE
ORF sequence :
MLTQEQAVEIKVLARRGTAVREIARQTGLSRNTVRRYLRDGQAGRYRQREPRPTKLDPFKGYLLERVAAARPHWIPATVLLRELQQAGYEGGVSQLKAFL
APHKRVAAEPVVRFETPPGKQMQADFTVIRRGRAPLLALVATLGYSRASFVRFTAGEDATTLCECLREAFVYFGGTPEQVLFDNAKSVVIERDAFGVGQH
RWNTQLLALAETYGFTPKVCQPYRAKTKGKVERFNRYLKESFVVPLATTLKQAGLKLDVDAANARIGRWLAEVANVRVHATTHERPAARLGTEQVALLPL
PTPTSMPMPVVSKLRRVLPRESLQHPLAVYDALLEVAA
APHKRVAAEPVVRFETPPGKQMQADFTVIRRGRAPLLALVATLGYSRASFVRFTAGEDATTLCECLREAFVYFGGTPEQVLFDNAKSVVIERDAFGVGQH
RWNTQLLALAETYGFTPKVCQPYRAKTKGKVERFNRYLKESFVVPLATTLKQAGLKLDVDAANARIGRWLAEVANVRVHATTHERPAARLGTEQVALLPL
PTPTSMPMPVVSKLRRVLPRESLQHPLAVYDALLEVAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
789 bp | 262 aa | 1094 | 1882 | + | No |
AG : IS21 helper
ORF sequence :
MNLQHERIDGLCSQLKLDRIASDWGALAQHAATTDASLADFLEQLLQAELGAREERKRQTLTKLASLPGIKTLEQYDFGFASGAPRAQIQELASLAFIER
AENVVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLFFNVVAKRYERGAIVL
TSNLPFTQWATAFADDQTLTAAMLDRLLHHAHIVQISGESYRLKDKRKAGQTSTRASAKAAA
AENVVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLFFNVVAKRYERGAIVL
TSNLPFTQWATAFADDQTLTAAMLDRLLHHAHIVQISGESYRLKDKRKAGQTSTRASAKAAA
Blast result :
Comments
ISRso19 is 61%(ORF1) and 74% (ORF2) aa similar to ISRso6.
IRL1 : AAACTGACCCACC
IRL2 : AAACCTGACCCACC
IRL1 : AAACTGACCCACC
IRL2 : AAACCTGACCCACC
References
1] Lee,Y.-A. and Khor,C.N. (2001) Direct submission GenBank