ISRso19

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Af450275 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1956 bp

Ends


IR Length : 10/12

IRL : TGTTAGCGCCGATGTAAAACTGACCCACCCGCCGAAGTAAACCTGACCCA
IRR : TGTCAACGCCGACCGAATTCTGACCCGCCTTTCGGTGTTTCGCCGAAGTA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTTAGCGCCGATGTAAAACTGACCCACCCGCCGAAGTAAACCTGACCCACCTGGGAGAGGATGGCGGCTTTTGCCGCCGATGCTGACTCAGGAGCAAGC
AGTGGAAATCAAGGTATTGGCAAGACGGGGTACGGCGGTACGGGAGATAGCGCGGCAAACGGGTCTGTCGCGCAACACGGTGCGGCGCTATCTGCGCGAC
GGGCAAGCCGGCCGTTACAGGCAGCGCGAGCCTCGCCCGACGAAGCTCGACCCGTTCAAGGGCTATCTGCTCGAACGCGTGGCGGCCGCGCGGCCGCACT
GGATTCCGGCAACGGTGCTGCTGCGGGAACTGCAGCAGGCCGGCTACGAAGGCGGCGTCAGCCAGCTCAAGGCATTCCTGGCACCGCATAAGCGTGTGGC
AGCCGAGCCGGTGGTGCGCTTCGAGACCCCTCCGGGCAAGCAGATGCAGGCCGACTTCACGGTCATCCGCCGTGGCCGCGCACCGCTGCTGGCGCTGGTG
GCAACGCTGGGATACAGCCGTGCGAGCTTCGTGCGTTTCACCGCTGGCGAGGACGCCACGACGTTGTGCGAGTGCCTGCGCGAAGCATTCGTCTACTTCG
GCGGCACGCCCGAGCAGGTGCTGTTCGATAACGCAAAGTCCGTGGTTATCGAGCGTGATGCGTTTGGCGTTGGCCAGCACCGATGGAACACACAGTTGCT
CGCACTGGCCGAGACCTACGGCTTCACGCCGAAGGTGTGCCAGCCCTATCGTGCCAAGACCAAGGGCAAGGTCGAGCGCTTCAATCGCTATCTGAAGGAG
AGCTTCGTGGTGCCGCTGGCGACCACGCTCAAGCAGGCGGGGCTGAAGCTGGACGTCGACGCTGCTAATGCACGCATCGGCCGGTGGCTTGCGGAAGTCG
CCAACGTGCGCGTGCATGCCACCACGCATGAGCGGCCGGCTGCAAGGCTGGGCACTGAGCAGGTAGCGCTGCTGCCATTGCCCACACCGACGTCGATGCC
AATGCCTGTGGTCTCGAAGCTGCGTCGTGTGCTGCCACGCGAGAGCCTGCAGCATCCGCTGGCCGTGTATGACGCGTTGCTGGAGGTGGCCGCATGAATC
TGCAGCATGAACGGATTGACGGCCTATGCTCGCAACTCAAGCTCGACCGTATCGCCAGCGATTGGGGAGCGCTCGCGCAGCACGCTGCGACGACCGACGC
GAGCCTGGCTGACTTCCTGGAGCAACTGCTGCAGGCCGAACTCGGCGCACGCGAGGAGCGCAAGCGCCAGACGCTCACGAAGCTCGCCTCACTGCCGGGT
ATCAAGACGCTGGAGCAATATGACTTCGGCTTCGCCAGCGGTGCCCCGCGAGCGCAGATACAGGAGCTGGCAAGCCTGGCGTTCATCGAGCGCGCCGAGA
ATGTCGTGCTGCTTGGGCCATCCGGCGTCGGCAAGACGCACATCGCCAGTGCGCTGGCCTACCGCGCGACGCAGGCGGGCATCAAGACGCGCTTCATCAC
GGCCGCCGACCTGATGATGCAACTGGCGACGGCGCGCCAACAGAACCGCTTGCGGGAGTTCTTCAACCGCGCAGTCATCGGGCCGAGGTTGCTGGTCATC
GACGAAATCGGTTACCTGCCGTTCGGGCGTGAAGAGGCAGACCTGTTCTTCAACGTCGTCGCCAAGCGTTACGAGCGCGGCGCCATCGTGTTGACGAGCA
ACCTGCCGTTCACGCAGTGGGCCACTGCCTTCGCCGACGACCAGACGTTGACGGCAGCCATGCTCGACCGGCTCTTGCATCACGCGCACATCGTGCAAAT
CAGCGGCGAGAGTTACCGCCTCAAGGACAAGCGCAAGGCAGGGCAAACGTCGACGCGGGCAAGCGCGAAAGCAGCCGCGTGACACAGGACCCGGGTGGGT
CAGATTTACTTCGGCGAAACACCGAAAGGCGGGTCAGAATTCGGTCGGCGTTGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa811097+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTQEQAVEIKVLARRGTAVREIARQTGLSRNTVRRYLRDGQAGRYRQREPRPTKLDPFKGYLLERVAAARPHWIPATVLLRELQQAGYEGGVSQLKAFL
APHKRVAAEPVVRFETPPGKQMQADFTVIRRGRAPLLALVATLGYSRASFVRFTAGEDATTLCECLREAFVYFGGTPEQVLFDNAKSVVIERDAFGVGQH
RWNTQLLALAETYGFTPKVCQPYRAKTKGKVERFNRYLKESFVVPLATTLKQAGLKLDVDAANARIGRWLAEVANVRVHATTHERPAARLGTEQVALLPL
PTPTSMPMPVVSKLRRVLPRESLQHPLAVYDALLEVAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
789 bp262 aa10941882+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MNLQHERIDGLCSQLKLDRIASDWGALAQHAATTDASLADFLEQLLQAELGAREERKRQTLTKLASLPGIKTLEQYDFGFASGAPRAQIQELASLAFIER
AENVVLLGPSGVGKTHIASALAYRATQAGIKTRFITAADLMMQLATARQQNRLREFFNRAVIGPRLLVIDEIGYLPFGREEADLFFNVVAKRYERGAIVL
TSNLPFTQWATAFADDQTLTAAMLDRLLHHAHIVQISGESYRLKDKRKAGQTSTRASAKAAA

 

Blast result :
Comments
ISRso19 is 61%(ORF1) and 74% (ORF2) aa similar to ISRso6.
IRL1 : AAACTGACCCACC
IRL2 : AAACCTGACCCACC
References
1] Lee,Y.-A. and Khor,C.N. (2001) Direct submission GenBank