ISfinder Mirror Site

ISRso18

Family IS5
Group IS5

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_003295	ND	Ralstonia solanacearum	Ralstonia solanacearum

DNA section

IS Length : 1188 bp

Ends

IR Length : 16/18

IRL : GGATGGTGTTCAGAACTCACTCCGTCGCACCGAGTCATCGATGCAGAGCC
IRR : GGATGATGTTCAAAACTCCCGCAAACCCGGACAGTCAAAGGAAGGTTCGC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GCGCTTTTTCATGGAA	TTAG	AGGCCAAGACCAATTC	4

DNA sequence

GGATGGTGTTCAGAACTCACTCCGTCGCACCGAGTCATCGATGCAGAGCCGACGCAGTGCAAACGATGTGATGGCGAGCTCGAATACAGCGTCGTGTTCA
GCCTGAAGGCGGGCCGGTTTCTGGCTCCTGGGCAGCTTGGCCAATGGCCGGCGCACTCATGCGCGGGCCTCACCCATCAGTCGCCCGCGCATCATCCACA
GGTTGCTCAGGGCGAACAGCGTGTGCAACTGTTGCGTGTTCTTCATCAAGCCGCGATAGCGAACCTTCAGATGCCCGAACTGGCGCTTGATGACACGAAA
CGGATGTTCCGCGCGGGCACGGATGCGCGCCTTGACCCGTTCCAGTTCATCAACGAGCTTGCCCAGCGCGGTGTTCTTGTCCAAGGCGCGGCGCTTGCCC
GGGCGCAATGCCACATGCCAACGCACCTTCAGCTTCTGCACTTCCTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGCCGAACACATCGGCCTCCTTGC
CATGCACCAGAGCATGCGCTTGCGTAACATCGTTGACGTTGGCCGCCGTGCCCACCACGGTATGCACCAGCCCCGAGTCTGCATCCACACCGATGTGCGC
CTTCATGCCGAAATGCCACTGGTTGCCTTTCTTGGTCTGGTGCATCTCAGGGTCGCGCTCGCCGCTTTGGTTCTTCGTCGAGCTGGGCGCGGAAATCAGC
GTGGCATCGACCGCCGTGCCCTCTTTGAGCAGGTACCCCTTGGCACTGAGTTGCTCGTTGACGGTCTGCAGAAACTGCTCGGCCAGCTTGTGCCGCTCCA
GCAAGTGCCGGAAGCGCAGAATGCTGACCCGGTCCGGCAGCCGGCTCATGCCACCCAGACCCGCGAATTGACGATACAACGGCACGTCGTACAGCGCCTC
TTCCATCGCCACGTCCGACAGCCCGAACCATTGCTGCAACAAGTGGATGCGCAGCATCGCCTCGATTGGAAACGGCTTGCGGCCGGTCGCCTTGGTCGGC
GCATGCGGTGCTATCAGCGCCAAAAACGCCTGCCATGGCACCACGCGCTCCATCTCGTCGAGAAATACCTGCTTGCGCGTGCGCCGGTTGCTCAGGTCCA
GGCCAAGGTCGGTTTGTTTCATGGACTCATCCCGTTTCGCGAACCTTCCTTTGACTGTCCGGGTTTGCGGGAGTTTTGAACATCATCC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
966 bp	321 aa	61	1026	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQTDLGLDLSNRRTRKQVFLDEMERVVPWQAFLALIAPHAPTKATGRKPFPIEAMLRIHLLQQWFGLSDVAMEEALYDVPLYRQFAGLGGMSRLPDRVS
ILRFRHLLERHKLAEQFLQTVNEQLSAKGYLLKEGTAVDATLISAPSSTKNQSGERDPEMHQTKKGNQWHFGMKAHIGVDADSGLVHTVVGTAANVNDVT
QAHALVHGKEADVFGDAGYQGIDKREEVQKLKVRWHVALRPGKRRALDKNTALGKLVDELERVKARIRARAEHPFRVIKRQFGHLKVRYRGLMKNTQQLH
TLFALSNLWMMRGRLMGEARA

Blast result :

Comments

References

1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502