ISRso14

  • Family IS3
  • Group IS407
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1234 bp

Ends


IR Length : 12

IRL : TGACCTGCCCCCGGCAACAGGGCCAGAGGGCTTCTAGTAAAGCCCAATTC
IRR : TGACCTGCCCCCAATAAACCGGTCCACCGGGAAGCTAGTAGAGTCCGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCTACTTCGACCGCGATAAGC3

DNA sequence

TGACCTGCCCCCGGCAACAGGGCCAGAGGGCTTCTAGTAAAGCCCAATTCAAGTTTGCTCCTGAGCGGCAGGAGCCACCGCTGTTGCTCGATACCGCGCT
GCGAATTCTGCAGGCGGTTGGTAATTCAAGGCGCTGTGCGGCCGCGCCTCGTTGTAATCCTGGCGCCACGCCGCGATGACAGCGCGTGCATGGGCAAGGC
TCGTGAACCAGTGCTCATTCAGGCATTCGTCTCGGAACTTGCCGTTGAACGACTCGATGTAGGCATTCTGCGTCGGTTTGCCAGCCTGAATCAATTTCAG
GGACACGCCGCTGGCGTATGCCCACTGGTCCAGCGCTCGGCTCGTGAACTCCGGCCCTTGGTCCGTGCGCAGCGCTTTGGGGTAGCCCCTGAAGCGCGCC
GCATGGTCCAGCGCTCGTGCCACATACAAGCCTGAGATGCCGTGGTCTACGACGATGTCGACCGCTTCTTTCGTGAAGTCATCAACGATGGTCAGGCACT
TCAGGCGACGCCCATTGGACAACGCGTCCATCACGAAGTCTATCGACCAGACCTCGTTCGGCGCGGCCGGCAGAGCCAGTCGCTCGCGCTCGACCATCAC
GCCGTGGCGTCGCCGCCGACGCCGCACAGCCAAGCCAGCCTCGCGATATAACCGGTGTACGCGTTTGTGATTCGCGTGCAGACCCTCGCGCTCCAGCAGA
ACGTGCAGTCGCCGGTAACCAAAGCGCCGACGCTCATGCGCCAGCTCAACCAGCCGCGCTTTGAGTATCTCGTTTCCTGGCGCAGTTTGCGCTTCGTAAT
GCAGCACGCTGCGGGACAGCCCGACAAGCCGGCAGGCGCGACGCTCGGAGATGCTGACCTTCCGCCGAATCGCCACGACCGCCTCGCGCTTGGCTTGCGG
GCTCAGGGCTTTCCCTTGACCACCACCTTCAGCGCTTCCATGTCCAGCATCGCTTCGGCCAGCAGCTTCTTCAGCTTGGCGTTCTCGGCTTCCAGCTCCT
TGAGCCGCCGGGCCTCCGACACCTCCATCCCGCCGAACTTGGCCCGCCAGGTGTAGAACGATGCGTCACTGAATCCGTGCTTCCTGCACAGCTCCTTGAC
CGCCACGCCGGCCTCGGCCTCCTTCAGGAACCCGATGATTTGCGCTTCCGTAAACCGCTTCTTCATGTCCGTCTTCCTCTCCGAAAACGGACTCTACTAG
CTTCCCGGTGGACCGGTTTATTGGGGGCAGGTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
264 bp87 aa69332+No
ORF function : Transposase
Description :

ORF sequence :

MKKRFTEAQIIGFLKEAEAGVAVKELCRKHGFSDASFYTWRAKFGGMEVSEARRLKELEAENAKLKKLLAEAMLDMEALKVVVKGKP

 

Blast result :
Comments
There are 4 copies of ISRso14 on Ralstonia solanacearum genome (3 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502