ISRso14
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1234 bp
Ends
IR Length : 12
IRL : TGACCTGCCCCCGGCAACAGGGCCAGAGGGCTTCTAGTAAAGCCCAATTC
IRR : TGACCTGCCCCCAATAAACCGGTCCACCGGGAAGCTAGTAGAGTCCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCTACTTC | GAC | CGCGATAAGC | 3 |
DNA sequence
TGACCTGCCCCCGGCAACAGGGCCAGAGGGCTTCTAGTAAAGCCCAATTCAAGTTTGCTCCTGAGCGGCAGGAGCCACCGCTGTTGCTCGATACCGCGCT
GCGAATTCTGCAGGCGGTTGGTAATTCAAGGCGCTGTGCGGCCGCGCCTCGTTGTAATCCTGGCGCCACGCCGCGATGACAGCGCGTGCATGGGCAAGGC
TCGTGAACCAGTGCTCATTCAGGCATTCGTCTCGGAACTTGCCGTTGAACGACTCGATGTAGGCATTCTGCGTCGGTTTGCCAGCCTGAATCAATTTCAG
GGACACGCCGCTGGCGTATGCCCACTGGTCCAGCGCTCGGCTCGTGAACTCCGGCCCTTGGTCCGTGCGCAGCGCTTTGGGGTAGCCCCTGAAGCGCGCC
GCATGGTCCAGCGCTCGTGCCACATACAAGCCTGAGATGCCGTGGTCTACGACGATGTCGACCGCTTCTTTCGTGAAGTCATCAACGATGGTCAGGCACT
TCAGGCGACGCCCATTGGACAACGCGTCCATCACGAAGTCTATCGACCAGACCTCGTTCGGCGCGGCCGGCAGAGCCAGTCGCTCGCGCTCGACCATCAC
GCCGTGGCGTCGCCGCCGACGCCGCACAGCCAAGCCAGCCTCGCGATATAACCGGTGTACGCGTTTGTGATTCGCGTGCAGACCCTCGCGCTCCAGCAGA
ACGTGCAGTCGCCGGTAACCAAAGCGCCGACGCTCATGCGCCAGCTCAACCAGCCGCGCTTTGAGTATCTCGTTTCCTGGCGCAGTTTGCGCTTCGTAAT
GCAGCACGCTGCGGGACAGCCCGACAAGCCGGCAGGCGCGACGCTCGGAGATGCTGACCTTCCGCCGAATCGCCACGACCGCCTCGCGCTTGGCTTGCGG
GCTCAGGGCTTTCCCTTGACCACCACCTTCAGCGCTTCCATGTCCAGCATCGCTTCGGCCAGCAGCTTCTTCAGCTTGGCGTTCTCGGCTTCCAGCTCCT
TGAGCCGCCGGGCCTCCGACACCTCCATCCCGCCGAACTTGGCCCGCCAGGTGTAGAACGATGCGTCACTGAATCCGTGCTTCCTGCACAGCTCCTTGAC
CGCCACGCCGGCCTCGGCCTCCTTCAGGAACCCGATGATTTGCGCTTCCGTAAACCGCTTCTTCATGTCCGTCTTCCTCTCCGAAAACGGACTCTACTAG
CTTCCCGGTGGACCGGTTTATTGGGGGCAGGTCA
GCGAATTCTGCAGGCGGTTGGTAATTCAAGGCGCTGTGCGGCCGCGCCTCGTTGTAATCCTGGCGCCACGCCGCGATGACAGCGCGTGCATGGGCAAGGC
TCGTGAACCAGTGCTCATTCAGGCATTCGTCTCGGAACTTGCCGTTGAACGACTCGATGTAGGCATTCTGCGTCGGTTTGCCAGCCTGAATCAATTTCAG
GGACACGCCGCTGGCGTATGCCCACTGGTCCAGCGCTCGGCTCGTGAACTCCGGCCCTTGGTCCGTGCGCAGCGCTTTGGGGTAGCCCCTGAAGCGCGCC
GCATGGTCCAGCGCTCGTGCCACATACAAGCCTGAGATGCCGTGGTCTACGACGATGTCGACCGCTTCTTTCGTGAAGTCATCAACGATGGTCAGGCACT
TCAGGCGACGCCCATTGGACAACGCGTCCATCACGAAGTCTATCGACCAGACCTCGTTCGGCGCGGCCGGCAGAGCCAGTCGCTCGCGCTCGACCATCAC
GCCGTGGCGTCGCCGCCGACGCCGCACAGCCAAGCCAGCCTCGCGATATAACCGGTGTACGCGTTTGTGATTCGCGTGCAGACCCTCGCGCTCCAGCAGA
ACGTGCAGTCGCCGGTAACCAAAGCGCCGACGCTCATGCGCCAGCTCAACCAGCCGCGCTTTGAGTATCTCGTTTCCTGGCGCAGTTTGCGCTTCGTAAT
GCAGCACGCTGCGGGACAGCCCGACAAGCCGGCAGGCGCGACGCTCGGAGATGCTGACCTTCCGCCGAATCGCCACGACCGCCTCGCGCTTGGCTTGCGG
GCTCAGGGCTTTCCCTTGACCACCACCTTCAGCGCTTCCATGTCCAGCATCGCTTCGGCCAGCAGCTTCTTCAGCTTGGCGTTCTCGGCTTCCAGCTCCT
TGAGCCGCCGGGCCTCCGACACCTCCATCCCGCCGAACTTGGCCCGCCAGGTGTAGAACGATGCGTCACTGAATCCGTGCTTCCTGCACAGCTCCTTGAC
CGCCACGCCGGCCTCGGCCTCCTTCAGGAACCCGATGATTTGCGCTTCCGTAAACCGCTTCTTCATGTCCGTCTTCCTCTCCGAAAACGGACTCTACTAG
CTTCCCGGTGGACCGGTTTATTGGGGGCAGGTCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
264 bp | 87 aa | 69 | 332 | + | No |
Description :
ORF sequence :
MKKRFTEAQIIGFLKEAEAGVAVKELCRKHGFSDASFYTWRAKFGGMEVSEARRLKELEAENAKLKKLLAEAMLDMEALKVVVKGKP
Blast result :
Comments
There are 4 copies of ISRso14 on Ralstonia solanacearum genome (3 on chromosome and 1 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502