ISRso13
- Family IS4
- Group IS4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1467 bp
Ends
IR Length : 21/23
IRL : CACCCCTTTCAAGGTCTTTCCGCCCGGGCCTTTTTGAGTACGCGGGCAGT
IRR : CACCCCTTTCAAGGTCTTGTCGCACAGAAGTGCCGTATTCTTCCGCTCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCATCTTC | AGGCTAAGAGC | GGATCATGAC | 11 |
DNA sequence
CACCCCTTTCAAGGTCTTTCCGCCCGGGCCTTTTTGAGTACGCGGGCAGTGCAGACATGGGCTCGGGCGATGCTGCCGTCCACATAGCCCGTGGGCTTGT
CGATCTTGGGGCCGCGTTTGCTCGTGGCCACTTGCGTGGGTGAGATGCGCCGCGCCAAGTGCAACAGCCTTTGAGCCAGCGACTGCGCAGACGCTTCGGC
CGCACTGGGCCAGTGCTCGGCTGGCAAAGCGATCAGCATGCCCTCATAGCCGCTTTTGATGTGCTCGGCCAGGTGATAGCTGGAGACCTCCAACTGCGGC
GCCGATTCATGGTGCGCCTGCTCGACGGCACGCTGCAGCAGTGACACGACGTTATAGGCCAGCACCGCCACCGTGAAGCCCAGTAAAGCCGCTCGGGGAT
GCCCCAGACTCTTGATCTCGCTGTGCAGCACCGACTCCAGGCGCTGGAACATGCTCTCGATGCGCCAGCGCTTGCGGTACAGCGCAGCGATCGTTGCCGC
ATCGACCTGGGCAGGCAGATTGCTCCACAGCCCGATCACGGTTTCGCCGGCCTCGGTAGGCGTGTCCAGTTCGATCTCGATGCGGCGCCAACTTGGCGGC
CTGGCTTGGCACTCGTCATCGTGAACGACTCGCACTTCGATGGCCTGCTCGCGCACGCGGCCCGTGTCGATACGCTTGTACCCACTCCAGCAGCCATGCC
GGCTTAGTCGCGGGTGGCGCGCATGCTCGCGCACGATGAATTCCGCTCCCGCCCGACTCCAGCCTTGCATGATGGTGTGGGTGCAGAAGTGCCGATCCGC
TATCCACAATTGCCCGGCTTGGGCACTGTCGAGCAAGGGCTGCATGCCGGCTCGCTCGCTTTCGTACGCATCCTCGCAGGCCACCACATCGCACACCAAG
CCCAGATCCGGGTCGTAGACCACCAAGCTGTGCCCAGGCAGCGCGGCGCCACGATAGCCGCGTAGCGGCCCCAGCCGCTTCTCGCTGGCCGGTAGATGGT
TGCCGTCTACGATGCGCAACTGCCAGCCCGGCAGGCTGGTGCGCTCATCCAGGTGCACCGCCACCTGCGCCAAACGCTGTGCGCTGCCGCGTACCAAGCC
TCGCAGAATCGCTGGCTCTGTGCGGTTGAGCTTGTCGTACAGCGCTGCCATTGACACCGGCAGATTGCCCATCTTGCGCGCGGCCGCATGTAACGAAGGA
CGCAGCCCCAGGGTCACCAACGTCATCAGCTCCACGATGGTGGAGAACATCAGCTCTCGCGGGTACTGGCGATTTCGATGCACTTCGAATACCTCGTCCA
CCCACGTAGCCGGCAACGCCCGCTCCAGCGCCAGACGCGCCATCACGCTCGCCGGCGCATGCTCCTCAAATCGCTCTACAACGGCTTGCCAGATTTCCTC
TCTCCCGTTTCCTCAAGGCGAGCGGAAGAATACGGCACTTCTGTGCGACAAGACCTTGAAAGGGGTG
CGATCTTGGGGCCGCGTTTGCTCGTGGCCACTTGCGTGGGTGAGATGCGCCGCGCCAAGTGCAACAGCCTTTGAGCCAGCGACTGCGCAGACGCTTCGGC
CGCACTGGGCCAGTGCTCGGCTGGCAAAGCGATCAGCATGCCCTCATAGCCGCTTTTGATGTGCTCGGCCAGGTGATAGCTGGAGACCTCCAACTGCGGC
GCCGATTCATGGTGCGCCTGCTCGACGGCACGCTGCAGCAGTGACACGACGTTATAGGCCAGCACCGCCACCGTGAAGCCCAGTAAAGCCGCTCGGGGAT
GCCCCAGACTCTTGATCTCGCTGTGCAGCACCGACTCCAGGCGCTGGAACATGCTCTCGATGCGCCAGCGCTTGCGGTACAGCGCAGCGATCGTTGCCGC
ATCGACCTGGGCAGGCAGATTGCTCCACAGCCCGATCACGGTTTCGCCGGCCTCGGTAGGCGTGTCCAGTTCGATCTCGATGCGGCGCCAACTTGGCGGC
CTGGCTTGGCACTCGTCATCGTGAACGACTCGCACTTCGATGGCCTGCTCGCGCACGCGGCCCGTGTCGATACGCTTGTACCCACTCCAGCAGCCATGCC
GGCTTAGTCGCGGGTGGCGCGCATGCTCGCGCACGATGAATTCCGCTCCCGCCCGACTCCAGCCTTGCATGATGGTGTGGGTGCAGAAGTGCCGATCCGC
TATCCACAATTGCCCGGCTTGGGCACTGTCGAGCAAGGGCTGCATGCCGGCTCGCTCGCTTTCGTACGCATCCTCGCAGGCCACCACATCGCACACCAAG
CCCAGATCCGGGTCGTAGACCACCAAGCTGTGCCCAGGCAGCGCGGCGCCACGATAGCCGCGTAGCGGCCCCAGCCGCTTCTCGCTGGCCGGTAGATGGT
TGCCGTCTACGATGCGCAACTGCCAGCCCGGCAGGCTGGTGCGCTCATCCAGGTGCACCGCCACCTGCGCCAAACGCTGTGCGCTGCCGCGTACCAAGCC
TCGCAGAATCGCTGGCTCTGTGCGGTTGAGCTTGTCGTACAGCGCTGCCATTGACACCGGCAGATTGCCCATCTTGCGCGCGGCCGCATGTAACGAAGGA
CGCAGCCCCAGGGTCACCAACGTCATCAGCTCCACGATGGTGGAGAACATCAGCTCTCGCGGGTACTGGCGATTTCGATGCACTTCGAATACCTCGTCCA
CCCACGTAGCCGGCAACGCCCGCTCCAGCGCCAGACGCGCCATCACGCTCGCCGGCGCATGCTCCTCAAATCGCTCTACAACGGCTTGCCAGATTTCCTC
TCTCCCGTTTCCTCAAGGCGAGCGGAAGAATACGGCACTTCTGTGCGACAAGACCTTGAAAGGGGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 125 | 1459 | + | No |
Chemistry : DDE
ORF sequence :
MARLALERALPATWVDEVFEVHRNRQYPRELMFSTIVELMTLVTLGLRPSLHAAARKMGNLPVSMAALYDKLNRTEPAILRGLVRGSAQRLAQVAVHLDE
RTSLPGWQLRIVDGNHLPASEKRLGPLRGYRGAALPGHSLVVYDPDLGLVCDVVACEDAYESERAGMQPLLDSAQAGQLWIADRHFCTHTIMQGWSRAGA
EFIVREHARHPRLSRHGCWSGYKRIDTGRVREQAIEVRVVHDDECQARPPSWRRIEIELDTPTEAGETVIGLWSNLPAQVDAATIAALYRKRWRIESMFQ
RLESVLHSEIKSLGHPRAALLGFTVAVLAYNVVSLLQRAVEQAHHESAPQLEVSSYHLAEHIKSGYEGMLIALPAEHWPSAAEASAQSLAQRLLHLARRI
SPTQVATSKRGPKIDKPTGYVDGSIARAHVCTARVLKKARAERP
RTSLPGWQLRIVDGNHLPASEKRLGPLRGYRGAALPGHSLVVYDPDLGLVCDVVACEDAYESERAGMQPLLDSAQAGQLWIADRHFCTHTIMQGWSRAGA
EFIVREHARHPRLSRHGCWSGYKRIDTGRVREQAIEVRVVHDDECQARPPSWRRIEIELDTPTEAGETVIGLWSNLPAQVDAATIAALYRKRWRIESMFQ
RLESVLHSEIKSLGHPRAALLGFTVAVLAYNVVSLLQRAVEQAHHESAPQLEVSSYHLAEHIKSGYEGMLIALPAEHWPSAAEASAQSLAQRLLHLARRI
SPTQVATSKRGPKIDKPTGYVDGSIARAHVCTARVLKKARAERP
Blast result :
Comments
There are 7 copies of ISRso13 on Ralstonia solanacearum genome (4 on chromosome and 3 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502