ISRso13

  • Family IS4
  • Group IS4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003295 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 1467 bp

Ends


IR Length : 21/23

IRL : CACCCCTTTCAAGGTCTTTCCGCCCGGGCCTTTTTGAGTACGCGGGCAGT
IRR : CACCCCTTTCAAGGTCTTGTCGCACAGAAGTGCCGTATTCTTCCGCTCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCATCTTCAGGCTAAGAGCGGATCATGAC11

DNA sequence

CACCCCTTTCAAGGTCTTTCCGCCCGGGCCTTTTTGAGTACGCGGGCAGTGCAGACATGGGCTCGGGCGATGCTGCCGTCCACATAGCCCGTGGGCTTGT
CGATCTTGGGGCCGCGTTTGCTCGTGGCCACTTGCGTGGGTGAGATGCGCCGCGCCAAGTGCAACAGCCTTTGAGCCAGCGACTGCGCAGACGCTTCGGC
CGCACTGGGCCAGTGCTCGGCTGGCAAAGCGATCAGCATGCCCTCATAGCCGCTTTTGATGTGCTCGGCCAGGTGATAGCTGGAGACCTCCAACTGCGGC
GCCGATTCATGGTGCGCCTGCTCGACGGCACGCTGCAGCAGTGACACGACGTTATAGGCCAGCACCGCCACCGTGAAGCCCAGTAAAGCCGCTCGGGGAT
GCCCCAGACTCTTGATCTCGCTGTGCAGCACCGACTCCAGGCGCTGGAACATGCTCTCGATGCGCCAGCGCTTGCGGTACAGCGCAGCGATCGTTGCCGC
ATCGACCTGGGCAGGCAGATTGCTCCACAGCCCGATCACGGTTTCGCCGGCCTCGGTAGGCGTGTCCAGTTCGATCTCGATGCGGCGCCAACTTGGCGGC
CTGGCTTGGCACTCGTCATCGTGAACGACTCGCACTTCGATGGCCTGCTCGCGCACGCGGCCCGTGTCGATACGCTTGTACCCACTCCAGCAGCCATGCC
GGCTTAGTCGCGGGTGGCGCGCATGCTCGCGCACGATGAATTCCGCTCCCGCCCGACTCCAGCCTTGCATGATGGTGTGGGTGCAGAAGTGCCGATCCGC
TATCCACAATTGCCCGGCTTGGGCACTGTCGAGCAAGGGCTGCATGCCGGCTCGCTCGCTTTCGTACGCATCCTCGCAGGCCACCACATCGCACACCAAG
CCCAGATCCGGGTCGTAGACCACCAAGCTGTGCCCAGGCAGCGCGGCGCCACGATAGCCGCGTAGCGGCCCCAGCCGCTTCTCGCTGGCCGGTAGATGGT
TGCCGTCTACGATGCGCAACTGCCAGCCCGGCAGGCTGGTGCGCTCATCCAGGTGCACCGCCACCTGCGCCAAACGCTGTGCGCTGCCGCGTACCAAGCC
TCGCAGAATCGCTGGCTCTGTGCGGTTGAGCTTGTCGTACAGCGCTGCCATTGACACCGGCAGATTGCCCATCTTGCGCGCGGCCGCATGTAACGAAGGA
CGCAGCCCCAGGGTCACCAACGTCATCAGCTCCACGATGGTGGAGAACATCAGCTCTCGCGGGTACTGGCGATTTCGATGCACTTCGAATACCTCGTCCA
CCCACGTAGCCGGCAACGCCCGCTCCAGCGCCAGACGCGCCATCACGCTCGCCGGCGCATGCTCCTCAAATCGCTCTACAACGGCTTGCCAGATTTCCTC
TCTCCCGTTTCCTCAAGGCGAGCGGAAGAATACGGCACTTCTGTGCGACAAGACCTTGAAAGGGGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa1251459+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARLALERALPATWVDEVFEVHRNRQYPRELMFSTIVELMTLVTLGLRPSLHAAARKMGNLPVSMAALYDKLNRTEPAILRGLVRGSAQRLAQVAVHLDE
RTSLPGWQLRIVDGNHLPASEKRLGPLRGYRGAALPGHSLVVYDPDLGLVCDVVACEDAYESERAGMQPLLDSAQAGQLWIADRHFCTHTIMQGWSRAGA
EFIVREHARHPRLSRHGCWSGYKRIDTGRVREQAIEVRVVHDDECQARPPSWRRIEIELDTPTEAGETVIGLWSNLPAQVDAATIAALYRKRWRIESMFQ
RLESVLHSEIKSLGHPRAALLGFTVAVLAYNVVSLLQRAVEQAHHESAPQLEVSSYHLAEHIKSGYEGMLIALPAEHWPSAAEASAQSLAQRLLHLARRI
SPTQVATSKRGPKIDKPTGYVDGSIARAHVCTARVLKKARAERP

 

Blast result :
Comments
There are 7 copies of ISRso13 on Ralstonia solanacearum genome (4 on chromosome and 3 on megaplasmid).
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502