ISRso10
- Family IS3
- Group IS2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003295 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1335 bp
Ends
IR Length : 22/28
IRL : TGGAACGGCCCCCAGAATCCCCGGACACAGTCACCCACTTAAACTACGGG
IRR : TGGATTTGCCCCCGCATCTCCGGACACCGCCTCACACTTGAGTTGATGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCAACGAG | AGCTG | AATCAACAAC | 5 |
DNA sequence
TGGAACGGCCCCCAGAATCCCCGGACACAGTCACCCACTTAAACTACGGGTAGGCATACGACTGTGTTTATGACTAGCAGCAACCAAGAAGTGATGGAAG
TGTTGACGGGCCCGGAGCGTCGCCGGCGGTGGTCGGTGGAAGAGAAGCTTGCGATGGTCCGAGAGAGCTTTGAGCCGGGCAAGACGGTCTCGATGGTGGC
GCGCCAGCACGGCGTGAATCCGAATCAGGTGTTCCAGTGGCGCAAGCTGTACCAAGACGGGAGCCTGTCGGCAGTGACCGCGGGCGAGGAAGTGGTGCCG
GCCTCGGAGCTGGCCGAAGCGCTCAAACAAGTCCGTGAGCTGCAGCGCATGCTCGGCAAGAAGACGATGGAGAACGAGATTCTTCGCGAAGCCGTGGAAT
ACGGTCGGGCAAAAAAGTGGATAGCGCGCTCGCCATCGTTGCCGGGGGACGACCAGTGAAGCTAGTTTGCGAGGTCCTCGGCGTAGCGCGCTCAAACGTG
GCGGCCAAGCGGGCCCGGCCGGGTGATTGGCGCGACGGGCGCACAGCTCGGCAAACCGACGACGCTAGCTTGGTCGACGAAATCCGGCGCACCATCGCCG
ACTTGCCGAGCTATGGCTACCGGCGGGTCTGGGGCAGATTGCGGCGCGAACGTGAGCGTCAATGCGAAGCGCCGATCAATGCCAAGCGTGTCTATCGGGT
CATGCGTGTGCACAGCTTGCTGCTTGAGCGCAGGCCGACGCCACCGCGTCCACCGCGCCGGCATGACGGCAAGGTCGCCGTGGCCAAGAGCAACCAGCGC
TGGTGCTCCGATGGCTTCGAGTTCCGCTGCGACAACGGCGAGCCGCTGCGGGTGACGTTCGCGCTGGATTGCTGCGACCGCGAGGCGATGAGCTGGGTGG
CGACGACCGGCGGCTACAGCGGCGACGTAGTACGCGACGTGATGCTGGCGGCCGTCGAGCAGCGCTTCGGCAATGTTCCGAAAGCGCCAGCGGAAATTGA
ATGGCTGACGGACAACGGCTCAGGCTACATTGCTGGGAAGACTCGCGAGTTCGCCACGGACATTGGCTTGAAGCCATTGACGACACCGGTTTGCAGCCCG
CAGAGCAACGGCATGGCCGAGAGCTTCGTGAAGACGATGAAGCGCGACTACGTCGCCTTCATGCCCAAGCCTGACGCGGCCACAGCGACGCGCAACCTCG
CCATCGCGTTCGAGCATTACAACGAGCAGCATCCCCATAGCGCACTGAAATATCGCTCGCCACGCGAGTTCAGGCGCAGGACGGAATCATCAACTCAAGT
GTGAGGCGGTGTCCGGAGATGCGGGGGCAAATCCA
TGTTGACGGGCCCGGAGCGTCGCCGGCGGTGGTCGGTGGAAGAGAAGCTTGCGATGGTCCGAGAGAGCTTTGAGCCGGGCAAGACGGTCTCGATGGTGGC
GCGCCAGCACGGCGTGAATCCGAATCAGGTGTTCCAGTGGCGCAAGCTGTACCAAGACGGGAGCCTGTCGGCAGTGACCGCGGGCGAGGAAGTGGTGCCG
GCCTCGGAGCTGGCCGAAGCGCTCAAACAAGTCCGTGAGCTGCAGCGCATGCTCGGCAAGAAGACGATGGAGAACGAGATTCTTCGCGAAGCCGTGGAAT
ACGGTCGGGCAAAAAAGTGGATAGCGCGCTCGCCATCGTTGCCGGGGGACGACCAGTGAAGCTAGTTTGCGAGGTCCTCGGCGTAGCGCGCTCAAACGTG
GCGGCCAAGCGGGCCCGGCCGGGTGATTGGCGCGACGGGCGCACAGCTCGGCAAACCGACGACGCTAGCTTGGTCGACGAAATCCGGCGCACCATCGCCG
ACTTGCCGAGCTATGGCTACCGGCGGGTCTGGGGCAGATTGCGGCGCGAACGTGAGCGTCAATGCGAAGCGCCGATCAATGCCAAGCGTGTCTATCGGGT
CATGCGTGTGCACAGCTTGCTGCTTGAGCGCAGGCCGACGCCACCGCGTCCACCGCGCCGGCATGACGGCAAGGTCGCCGTGGCCAAGAGCAACCAGCGC
TGGTGCTCCGATGGCTTCGAGTTCCGCTGCGACAACGGCGAGCCGCTGCGGGTGACGTTCGCGCTGGATTGCTGCGACCGCGAGGCGATGAGCTGGGTGG
CGACGACCGGCGGCTACAGCGGCGACGTAGTACGCGACGTGATGCTGGCGGCCGTCGAGCAGCGCTTCGGCAATGTTCCGAAAGCGCCAGCGGAAATTGA
ATGGCTGACGGACAACGGCTCAGGCTACATTGCTGGGAAGACTCGCGAGTTCGCCACGGACATTGGCTTGAAGCCATTGACGACACCGGTTTGCAGCCCG
CAGAGCAACGGCATGGCCGAGAGCTTCGTGAAGACGATGAAGCGCGACTACGTCGCCTTCATGCCCAAGCCTGACGCGGCCACAGCGACGCGCAACCTCG
CCATCGCGTTCGAGCATTACAACGAGCAGCATCCCCATAGCGCACTGAAATATCGCTCGCCACGCGAGTTCAGGCGCAGGACGGAATCATCAACTCAAGT
GTGAGGCGGTGTCCGGAGATGCGGGGGCAAATCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
369 bp | 122 aa | 91 | 459 | + | No |
Description : First part of the transposase
ORF sequence :
MMEVLTGPERRRRWSVEEKLAMVRESFEPGKTVSMVARQHGVNPNQVFQWRKLYQDGSLSAVTAGEEVVPASELAEALKQVRELQRMLGKKTMENEILRE
AVEYGRAKKWIARSPSLPGDDQ
AVEYGRAKKWIARSPSLPGDDQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
966 bp | 393 aa | 339 | 1304 | + | No |
Description : Second part of the transposase
ORF sequence :
AAAHARQEDDGERDSSRSRGIRSGKKVDSALAIVAGGRPVKLVCEVLGVARSNVAAKRARPGDWRDGRTARQTDDASLVDEIRRTIADLPSYGYRRVWGR
LRRERERQCEAPINAKRVYRVMRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRD
VMLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPH
SALKYRSPREFRRRTESSTQV
LRRERERQCEAPINAKRVYRVMRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRD
VMLAAVEQRFGNVPKAPAEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPH
SALKYRSPREFRRRTESSTQV
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1214 bp | 404 aa | 91 | 1304 | + | Yes |
Chemistry : DDE
ORF sequence :
MMEVLTGPERRRRWSVEEKLAMVRESFEPGKTVSMVARQHGVNPNQVFQWRKLYQDGSLSAVTAGEEVVPASELAEALKQVRELQRMLGKKTMENEILRE
AVEYGRAKKVDSALAIVAGGRPVKLVCEVLGVARSNVAAKRARPGDWRDGRTARQTDDASLVDEIRRTIADLPSYGYRRVWGRLRRERERQCEAPINAKR
VYRVMRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDVMLAAVEQRFGNVPKAP
AEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTES
STQV
AVEYGRAKKVDSALAIVAGGRPVKLVCEVLGVARSNVAAKRARPGDWRDGRTARQTDDASLVDEIRRTIADLPSYGYRRVWGRLRRERERQCEAPINAKR
VYRVMRVHSLLLERRPTPPRPPRRHDGKVAVAKSNQRWCSDGFEFRCDNGEPLRVTFALDCCDREAMSWVATTGGYSGDVVRDVMLAAVEQRFGNVPKAP
AEIEWLTDNGSGYIAGKTREFATDIGLKPLTTPVCSPQSNGMAESFVKTMKRDYVAFMPKPDAATATRNLAIAFEHYNEQHPHSALKYRSPREFRRRTES
STQV
Blast result :
Comments
There are 5 copies of ISRso10 on Ralstonia solanacearum genome (3 on chromosome and 2 on megaplasmid). One copie is disrupted by ISRso6.
References
1] Salanoubat,M., Genin,S., Artiguenave,F., Gouzy,J., Mangenot,S.,Arlat,M., Billault,A., Brottier,P., Camus,J.C., Cattolico,L., Chandler,M., Choisne,N., Claudel-Renard,C., Cunnac,S., Demange,N., Gaspin,C., Lavie,M., Moisan,A., Robert,C., Saurin,W., Schiex,T., Siguier,P., Thebault,P., Whalen,M., Wincker,P., Levy,M., Weissenbach,J. and Boucher,C.A. (2002) Nature 415 (6871), 497-502