ISRso1
- Family IS5
- Group
Isoform Synonym(s) ISRso4, IS1424
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF239240 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 884 bp
Ends
IR Length : 17/18
IRL : GAGCCCGTTTGAAAATTCCCCGCCGTTGTGGTGTAAAGGCGGGATGTGGA
IRR : GAGCCCGTTTGGAAATTCAAGGATGAGCGATTTTGCGCAGTAGCAAGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGCCCGTTTGAAAATTCCCCGCCGTTGTGGTGTAAAGGCGGGATGTGGAAAAAAGAACATCGAGAACGCGAGGCGAAGCTGGGTCGCAAGACCAAGCGG
TACCCAAGCGACCTGACGGATATCGAATGGGTCGCTGTGCAGCCGTTGCTGCCCCGCGCCGCCGTGCGAGGTCGGCGTCGGGAGTGCGACTTGAGGGAGG
TGGTCAACGCCTTGCGCTATCTTGTGCGAGCGGGCTGCGGTTGGCGCATGCTGCCTCACGACTTCCCGCCTTGGCAAACCGTGTATTGGTGGTTTCGTCG
GCTCATGCGTCGCTTGCTGTTCCGCACGCTGCACGACGTGGTGCTGATGTTGGACCGGGAGTTGGCTGGGCGGCAGCCGTGCCCAAGTGCGGGCGTCATC
GACAGGCAGACAGTCAAAGCGCCCTCGGCCGACAAGCGTGGCTACGACGCGGCCAAGAAAATCGTCGGGCGCAAGCGGCATATCGCGGTGGACACGGATG
GACGGCTGCTGATGGTGAACCTGACACCGGCGGACATTGCTGATAGCACGGGTGCGCTGGCGGTGCTGGAAGCGGTGAAGAAGCGCTGGCCAGGCATAAA
ACACCTGTTCGCTGACGGTGCGTATGACCGCACAGCGCTGATGGACAAGGCATCGACCCTCGACTTCGTGGTTGAGGTGGTGCGCCGGCACGAGCAGCAA
ACGGGCTTTGCCGTTCTGCCGCGCCGCTGGGTGGTCGAGCGCACCTTTGGATGGATGGTTCGCTGGCGTCGACTCGTACGCGACTACGAACAGCGGGCAG
ACGTATCGGAAGCCATGATTCATATCGCGATGAGCGGCTTGCTACTGCGCAAAATCGCTCATCCTTGAATTTCCAAACGGGCTC
TACCCAAGCGACCTGACGGATATCGAATGGGTCGCTGTGCAGCCGTTGCTGCCCCGCGCCGCCGTGCGAGGTCGGCGTCGGGAGTGCGACTTGAGGGAGG
TGGTCAACGCCTTGCGCTATCTTGTGCGAGCGGGCTGCGGTTGGCGCATGCTGCCTCACGACTTCCCGCCTTGGCAAACCGTGTATTGGTGGTTTCGTCG
GCTCATGCGTCGCTTGCTGTTCCGCACGCTGCACGACGTGGTGCTGATGTTGGACCGGGAGTTGGCTGGGCGGCAGCCGTGCCCAAGTGCGGGCGTCATC
GACAGGCAGACAGTCAAAGCGCCCTCGGCCGACAAGCGTGGCTACGACGCGGCCAAGAAAATCGTCGGGCGCAAGCGGCATATCGCGGTGGACACGGATG
GACGGCTGCTGATGGTGAACCTGACACCGGCGGACATTGCTGATAGCACGGGTGCGCTGGCGGTGCTGGAAGCGGTGAAGAAGCGCTGGCCAGGCATAAA
ACACCTGTTCGCTGACGGTGCGTATGACCGCACAGCGCTGATGGACAAGGCATCGACCCTCGACTTCGTGGTTGAGGTGGTGCGCCGGCACGAGCAGCAA
ACGGGCTTTGCCGTTCTGCCGCGCCGCTGGGTGGTCGAGCGCACCTTTGGATGGATGGTTCGCTGGCGTCGACTCGTACGCGACTACGAACAGCGGGCAG
ACGTATCGGAAGCCATGATTCATATCGCGATGAGCGGCTTGCTACTGCGCAAAATCGCTCATCCTTGAATTTCCAAACGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 44 | 868 | + | No |
Chemistry : DDE
ORF sequence :
MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYLVRAGCGWRMLPHDFPPWQTVYWWFRRLMRRLLFRTLHDVV
LMLDRELAGRQPCPSAGVIDRQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNLTPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALM
DKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVRWRRLVRDYEQRADVSEAMIHIAMSGLLLRKIAHP
LMLDRELAGRQPCPSAGVIDRQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNLTPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALM
DKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVRWRRLVRDYEQRADVSEAMIHIAMSGLLLRKIAHP
Blast result :
Comments
ISRso1 is 80% aa similar with IS1528.
References
1] Thoquet,P., Trigalet-Demery,D. and Trigalet,A. (2001) Direct submission GenBank.