ISRso1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRso4, IS1424
Accession numberTranspositionOriginHost
AF239240 ND Ralstonia solanacearum
Ralstonia solanacearum
DNA section
IS Length : 884 bp

Ends


IR Length : 17/18

IRL : GAGCCCGTTTGAAAATTCCCCGCCGTTGTGGTGTAAAGGCGGGATGTGGA
IRR : GAGCCCGTTTGGAAATTCAAGGATGAGCGATTTTGCGCAGTAGCAAGCCG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGCCCGTTTGAAAATTCCCCGCCGTTGTGGTGTAAAGGCGGGATGTGGAAAAAAGAACATCGAGAACGCGAGGCGAAGCTGGGTCGCAAGACCAAGCGG
TACCCAAGCGACCTGACGGATATCGAATGGGTCGCTGTGCAGCCGTTGCTGCCCCGCGCCGCCGTGCGAGGTCGGCGTCGGGAGTGCGACTTGAGGGAGG
TGGTCAACGCCTTGCGCTATCTTGTGCGAGCGGGCTGCGGTTGGCGCATGCTGCCTCACGACTTCCCGCCTTGGCAAACCGTGTATTGGTGGTTTCGTCG
GCTCATGCGTCGCTTGCTGTTCCGCACGCTGCACGACGTGGTGCTGATGTTGGACCGGGAGTTGGCTGGGCGGCAGCCGTGCCCAAGTGCGGGCGTCATC
GACAGGCAGACAGTCAAAGCGCCCTCGGCCGACAAGCGTGGCTACGACGCGGCCAAGAAAATCGTCGGGCGCAAGCGGCATATCGCGGTGGACACGGATG
GACGGCTGCTGATGGTGAACCTGACACCGGCGGACATTGCTGATAGCACGGGTGCGCTGGCGGTGCTGGAAGCGGTGAAGAAGCGCTGGCCAGGCATAAA
ACACCTGTTCGCTGACGGTGCGTATGACCGCACAGCGCTGATGGACAAGGCATCGACCCTCGACTTCGTGGTTGAGGTGGTGCGCCGGCACGAGCAGCAA
ACGGGCTTTGCCGTTCTGCCGCGCCGCTGGGTGGTCGAGCGCACCTTTGGATGGATGGTTCGCTGGCGTCGACTCGTACGCGACTACGAACAGCGGGCAG
ACGTATCGGAAGCCATGATTCATATCGCGATGAGCGGCTTGCTACTGCGCAAAATCGCTCATCCTTGAATTTCCAAACGGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa44868+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MWKKEHREREAKLGRKTKRYPSDLTDIEWVAVQPLLPRAAVRGRRRECDLREVVNALRYLVRAGCGWRMLPHDFPPWQTVYWWFRRLMRRLLFRTLHDVV
LMLDRELAGRQPCPSAGVIDRQTVKAPSADKRGYDAAKKIVGRKRHIAVDTDGRLLMVNLTPADIADSTGALAVLEAVKKRWPGIKHLFADGAYDRTALM
DKASTLDFVVEVVRRHEQQTGFAVLPRRWVVERTFGWMVRWRRLVRDYEQRADVSEAMIHIAMSGLLLRKIAHP

 

Blast result :
Comments
ISRso1 is 80% aa similar with IS1528.
References
1] Thoquet,P., Trigalet-Demery,D. and Trigalet,A. (2001) Direct submission GenBank.