ISRme1
- Family IS5
- Group
Isoform Synonym(s) ISRaleut2
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF236817 | ND | Ralstonia metallidurans | Ralstonia metallidurans CH34 |
DNA section
IS Length : 1331 bp
Ends
IR Length : 19/23
IRL : CAGGCTGCTGAAATACCGGCAGCGAACGTCAGCGCGACGACTTGCTGAAT
IRR : CAGGCTGCTGAAGTACTAGCCGCATAAAAGCGAAGCTTCCCTCTGCAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAGGCTGCTGAAATACCGGCAGCGAACGTCAGCGCGACGACTTGCTGAATCGTTAATCTGAGGACTCCATACAATCCCACGTTCATGCGCGGCGCTGACA
CCTTCACCGAAAGTTTGTTCACCATGCGGCGGCTGGAAGATTTCGTGCCGAAGTCCCACCCCCTGCGCGCGATCCGCACCATGGCGAACCAGGCGCTGGC
GAAGATGGATCGGCTGTTCGCGCAAATGTACGAGGCCGATATCAAGGGTGGCCGGCCCAGCATCGCGCCGGAGAAGTTGCTGCGGGCCATGCTGCTGCAG
GTGCTCTACAGCGTCCGGTCGGAGCGCCAGCTCATGGAACAGACGCACTACAACTTGCTGTTTCGCTGGTTCATTGGCCTGGCGATGGATGATGTGGTCT
GGGTGCCCAGCGTCTTCAGCAAGAACCGGGAACGGCTGATCAAGCACGATGCTGTGATCGACTTCTTCAACGAAGTGCTGGCCATCGCGCAGAAGAAGGA
CTGGCTGTCGGGCGAGCACTTCAGCGTCGACGGCACGTTGATTAAGGCGTGGGCTGGCCACAAGAGCTTTGTACGCAAGGATGGCGACGACCAAGACGAT
AACGACGGTGCTGACTTCAAGGGTGAAAAGCGCAGCAACGAGACGCACGAGTCCAAAACCGATCCCGATGCCAAGCTGTACCGCAAGGGCAAAACCGCCA
GTGAACTGCGTTACATGGGTCATACCCTGAGCGACAACCGCCACGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCGAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAGGACCTGAATGTGGAAGTCACCGTGGGTGCGGACAAGGGCTACGACGCGCACGAGTTCATT
CAAGCCTGCCTGGAGTTGAAGGTGACGCCGCACGTCGCACAAAACACCTCTGGCCGCCGCTCGGCCGTTCCCGACGCCATTGCAGGCACCAAGGGTTATG
CCATCTCACAGCAGAAGCGCAAGCTGATTGAACAAGGCTTTGGATGGGCCAAGACCGTTGGGCGCATGCGCCAGGTGATGGTGCGCGGACTAAAGAAGGT
CGATCAAATGTTTGTGCTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGTTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGCAATGAGGC
CGGAAACGGTCGCCAAATCAACGAAAAAGTCGGTGAAGTGACGATCAGCTTCCGGATTGTGAAAAATAGCGAGCCCATCAGCCTTGCAGAGGGAAGCTTC
GCTTTTATGCGGCTAGTACTTCAGCAGCCTG
CCTTCACCGAAAGTTTGTTCACCATGCGGCGGCTGGAAGATTTCGTGCCGAAGTCCCACCCCCTGCGCGCGATCCGCACCATGGCGAACCAGGCGCTGGC
GAAGATGGATCGGCTGTTCGCGCAAATGTACGAGGCCGATATCAAGGGTGGCCGGCCCAGCATCGCGCCGGAGAAGTTGCTGCGGGCCATGCTGCTGCAG
GTGCTCTACAGCGTCCGGTCGGAGCGCCAGCTCATGGAACAGACGCACTACAACTTGCTGTTTCGCTGGTTCATTGGCCTGGCGATGGATGATGTGGTCT
GGGTGCCCAGCGTCTTCAGCAAGAACCGGGAACGGCTGATCAAGCACGATGCTGTGATCGACTTCTTCAACGAAGTGCTGGCCATCGCGCAGAAGAAGGA
CTGGCTGTCGGGCGAGCACTTCAGCGTCGACGGCACGTTGATTAAGGCGTGGGCTGGCCACAAGAGCTTTGTACGCAAGGATGGCGACGACCAAGACGAT
AACGACGGTGCTGACTTCAAGGGTGAAAAGCGCAGCAACGAGACGCACGAGTCCAAAACCGATCCCGATGCCAAGCTGTACCGCAAGGGCAAAACCGCCA
GTGAACTGCGTTACATGGGTCATACCCTGAGCGACAACCGCCACGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCGAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAGGACCTGAATGTGGAAGTCACCGTGGGTGCGGACAAGGGCTACGACGCGCACGAGTTCATT
CAAGCCTGCCTGGAGTTGAAGGTGACGCCGCACGTCGCACAAAACACCTCTGGCCGCCGCTCGGCCGTTCCCGACGCCATTGCAGGCACCAAGGGTTATG
CCATCTCACAGCAGAAGCGCAAGCTGATTGAACAAGGCTTTGGATGGGCCAAGACCGTTGGGCGCATGCGCCAGGTGATGGTGCGCGGACTAAAGAAGGT
CGATCAAATGTTTGTGCTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGTTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGCAATGAGGC
CGGAAACGGTCGCCAAATCAACGAAAAAGTCGGTGAAGTGACGATCAGCTTCCGGATTGTGAAAAATAGCGAGCCCATCAGCCTTGCAGAGGGAAGCTTC
GCTTTTATGCGGCTAGTACTTCAGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 85 | 1185 | + | No |
Chemistry : DDE
ORF sequence :
MRGADTFTESLFTMRRLEDFVPKSHPLRAIRTMANQALAKMDRLFAQMYEADIKGGRPSIAPEKLLRAMLLQVLYSVRSERQLMEQTHYNLLFRWFIGLA
MDDVVWVPSVFSKNRERLIKHDAVIDFFNEVLAIAQKKDWLSGEHFSVDGTLIKAWAGHKSFVRKDGDDQDDNDGADFKGEKRSNETHESKTDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIQACLELKVTPHVAQNTSGRRSAVPDAIA
GTKGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ
MDDVVWVPSVFSKNRERLIKHDAVIDFFNEVLAIAQKKDWLSGEHFSVDGTLIKAWAGHKSFVRKDGDDQDDNDGADFKGEKRSNETHESKTDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIQACLELKVTPHVAQNTSGRRSAVPDAIA
GTKGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ
Blast result :
Comments
ISRme1 is 42% aa similar to IS1562.
References
1] Faure,D.D., Schneider,D.D. and Blot,M.M. (2000) Direct submission Genbank