ISRme1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRaleut2
Accession numberTranspositionOriginHost
AF236817 ND Ralstonia metallidurans
Ralstonia metallidurans CH34
DNA section
IS Length : 1331 bp

Ends


IR Length : 19/23

IRL : CAGGCTGCTGAAATACCGGCAGCGAACGTCAGCGCGACGACTTGCTGAAT
IRR : CAGGCTGCTGAAGTACTAGCCGCATAAAAGCGAAGCTTCCCTCTGCAAGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAGGCTGCTGAAATACCGGCAGCGAACGTCAGCGCGACGACTTGCTGAATCGTTAATCTGAGGACTCCATACAATCCCACGTTCATGCGCGGCGCTGACA
CCTTCACCGAAAGTTTGTTCACCATGCGGCGGCTGGAAGATTTCGTGCCGAAGTCCCACCCCCTGCGCGCGATCCGCACCATGGCGAACCAGGCGCTGGC
GAAGATGGATCGGCTGTTCGCGCAAATGTACGAGGCCGATATCAAGGGTGGCCGGCCCAGCATCGCGCCGGAGAAGTTGCTGCGGGCCATGCTGCTGCAG
GTGCTCTACAGCGTCCGGTCGGAGCGCCAGCTCATGGAACAGACGCACTACAACTTGCTGTTTCGCTGGTTCATTGGCCTGGCGATGGATGATGTGGTCT
GGGTGCCCAGCGTCTTCAGCAAGAACCGGGAACGGCTGATCAAGCACGATGCTGTGATCGACTTCTTCAACGAAGTGCTGGCCATCGCGCAGAAGAAGGA
CTGGCTGTCGGGCGAGCACTTCAGCGTCGACGGCACGTTGATTAAGGCGTGGGCTGGCCACAAGAGCTTTGTACGCAAGGATGGCGACGACCAAGACGAT
AACGACGGTGCTGACTTCAAGGGTGAAAAGCGCAGCAACGAGACGCACGAGTCCAAAACCGATCCCGATGCCAAGCTGTACCGCAAGGGCAAAACCGCCA
GTGAACTGCGTTACATGGGTCATACCCTGAGCGACAACCGCCACGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCGAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAGGACCTGAATGTGGAAGTCACCGTGGGTGCGGACAAGGGCTACGACGCGCACGAGTTCATT
CAAGCCTGCCTGGAGTTGAAGGTGACGCCGCACGTCGCACAAAACACCTCTGGCCGCCGCTCGGCCGTTCCCGACGCCATTGCAGGCACCAAGGGTTATG
CCATCTCACAGCAGAAGCGCAAGCTGATTGAACAAGGCTTTGGATGGGCCAAGACCGTTGGGCGCATGCGCCAGGTGATGGTGCGCGGACTAAAGAAGGT
CGATCAAATGTTTGTGCTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGTTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGCAATGAGGC
CGGAAACGGTCGCCAAATCAACGAAAAAGTCGGTGAAGTGACGATCAGCTTCCGGATTGTGAAAAATAGCGAGCCCATCAGCCTTGCAGAGGGAAGCTTC
GCTTTTATGCGGCTAGTACTTCAGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa851185+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGADTFTESLFTMRRLEDFVPKSHPLRAIRTMANQALAKMDRLFAQMYEADIKGGRPSIAPEKLLRAMLLQVLYSVRSERQLMEQTHYNLLFRWFIGLA
MDDVVWVPSVFSKNRERLIKHDAVIDFFNEVLAIAQKKDWLSGEHFSVDGTLIKAWAGHKSFVRKDGDDQDDNDGADFKGEKRSNETHESKTDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIQACLELKVTPHVAQNTSGRRSAVPDAIA
GTKGYAISQQKRKLIEQGFGWAKTVGRMRQVMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ

 

Blast result :
Comments
ISRme1 is 42% aa similar to IS1562.
References
1] Faure,D.D., Schneider,D.D. and Blot,M.M. (2000) Direct submission Genbank