ISHala1
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGFZ01000124 | ND | Halobiforma lacisalsi | Halobiforma lacisalsi AJ5 |
DNA section
IS Length : 1277 bp
Ends
IR Length : 16
IRL : CTCAGCTTTGCACGTTGAAGTAGGTGCATGACGTAGGCGGTGGCAAGGAC
IRR : CTCAGCTTTGCACGTTAGCGTCAGCGGTTGAGTGAACGAAGAGGTGGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTCTTTTC | TATACGGA | GTTAGATCGA | 8 |
DNA sequence
CTCAGCTTTGCACGTTGAAGTAGGTGCATGACGTAGGCGGTGGCAAGGACGGATGATGCCGATTACGGAGTTCTTGTCGTGTACGCGTGTGTTCGACGAG
TTCGAGTCGCTGTCTCCAGCCCAGCGCCATCACGCGAAAACCTACGCCACCGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCAGGCATCGCACGCGAAG
TCCTTCCAGCCAAGGGCAAACGCGCCCTCAACAAGTTCTTCACCGAGTACGACTGGGACGAACAGCAATTCAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGTGAAACGCGCTGGTCACAGGGTGGTTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGCCACTTCTAC
GATCACGCTGAAGGTGACACTGTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCCGACGATAAAACCGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAGACCACGACACCAAGTACGATCTCGCCCGCGAGATCGTCACCGAACTCGAAGAAGAGGTAGGTGTGCCTGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGGTCTCGTTGAACACATCGAATCCTACGGCAAGGACTGGATCGGCCCGCTCCGGAGCAATCGACAGGTG
ACCTACGGCGGAGAAGAGCTAAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGCAGAGCGCAACATCGAGGACGATACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGTTATCGCCGAGAAAGAGACCGATGAAGACGAAGAGAATCCGGTCAAGTACCTCGCTACGAACAA
AATCGACGCACCGACCGAGCACGTGATCCGCTCTTACGGGATGCGCTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCTTTGGAGAC
TGCGAGATGCAGACCGACGAAGGTGCCAGTCGTCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGGGGA
CTGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACACTCCCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGATCG
CGGTATCGATGACTTGATGACCGAGATCGACCACCTCTTCGTTCACTCAACCGCTGACGCTAACGTGCAAAGCTGAG
TTCGAGTCGCTGTCTCCAGCCCAGCGCCATCACGCGAAAACCTACGCCACCGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCAGGCATCGCACGCGAAG
TCCTTCCAGCCAAGGGCAAACGCGCCCTCAACAAGTTCTTCACCGAGTACGACTGGGACGAACAGCAATTCAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGTGAAACGCGCTGGTCACAGGGTGGTTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGCCACTTCTAC
GATCACGCTGAAGGTGACACTGTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCCGACGATAAAACCGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAGACCACGACACCAAGTACGATCTCGCCCGCGAGATCGTCACCGAACTCGAAGAAGAGGTAGGTGTGCCTGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGGTCTCGTTGAACACATCGAATCCTACGGCAAGGACTGGATCGGCCCGCTCCGGAGCAATCGACAGGTG
ACCTACGGCGGAGAAGAGCTAAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGCAGAGCGCAACATCGAGGACGATACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGTTATCGCCGAGAAAGAGACCGATGAAGACGAAGAGAATCCGGTCAAGTACCTCGCTACGAACAA
AATCGACGCACCGACCGAGCACGTGATCCGCTCTTACGGGATGCGCTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCTTTGGAGAC
TGCGAGATGCAGACCGACGAAGGTGCCAGTCGTCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGGGGA
CTGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACACTCCCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGATCG
CGGTATCGATGACTTGATGACCGAGATCGACCACCTCTTCGTTCACTCAACCGCTGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 53 | 1276 | + | No |
Chemistry : DDE
ORF sequence :
MMPITEFLSCTRVFDEFESLSPAQRHHAKTYATGLVAASNKTVAGIAREVLPAKGKRALNKFFTEYDWDEQQFNHERLEELQKHGETRWSQGGYIILDDT
ITEKAGDEVPGVGHFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQDHDTKYDLAREIVTELEEEVGVPADTYLFDSWFAHDSGLVEHIE
SYGKDWIGPLRSNRQVTYGGEELSVDALAERIDTAERNIEDDTYHIWTKKLPVSQLGDVKLVIAEKETDEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGFGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGIDDLMTEIDHLFVHST
ADANVQS
ITEKAGDEVPGVGHFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQDHDTKYDLAREIVTELEEEVGVPADTYLFDSWFAHDSGLVEHIE
SYGKDWIGPLRSNRQVTYGGEELSVDALAERIDTAERNIEDDTYHIWTKKLPVSQLGDVKLVIAEKETDEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGFGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGIDDLMTEIDHLFVHST
ADANVQS
Blast result :
Comments
ISHala1 is 95% aa similar to ISNpe1.
References
1] ISfinder submission (2012)
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.