ISHala1

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AGFZ01000124 ND Halobiforma lacisalsi
Halobiforma lacisalsi AJ5
DNA section
IS Length : 1277 bp

Ends


IR Length : 16

IRL : CTCAGCTTTGCACGTTGAAGTAGGTGCATGACGTAGGCGGTGGCAAGGAC
IRR : CTCAGCTTTGCACGTTAGCGTCAGCGGTTGAGTGAACGAAGAGGTGGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTCTTTTCTATACGGAGTTAGATCGA8

DNA sequence

CTCAGCTTTGCACGTTGAAGTAGGTGCATGACGTAGGCGGTGGCAAGGACGGATGATGCCGATTACGGAGTTCTTGTCGTGTACGCGTGTGTTCGACGAG
TTCGAGTCGCTGTCTCCAGCCCAGCGCCATCACGCGAAAACCTACGCCACCGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCAGGCATCGCACGCGAAG
TCCTTCCAGCCAAGGGCAAACGCGCCCTCAACAAGTTCTTCACCGAGTACGACTGGGACGAACAGCAATTCAACCACGAACGCCTCGAAGAACTCCAAAA
ACACGGTGAAACGCGCTGGTCACAGGGTGGTTACATCATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGCCACTTCTAC
GATCACGCTGAAGGTGACACTGTCTGGGGCCAAGACCTCATCTACGCCTTCTACGCCGACGATAAAACCGCCTACCCACTCACTTTCCGCCTCTACGAAA
AACAGGACGAAGATGACCAAGACCACGACACCAAGTACGATCTCGCCCGCGAGATCGTCACCGAACTCGAAGAAGAGGTAGGTGTGCCTGCGGACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGGTCTCGTTGAACACATCGAATCCTACGGCAAGGACTGGATCGGCCCGCTCCGGAGCAATCGACAGGTG
ACCTACGGCGGAGAAGAGCTAAGCGTCGATGCGCTGGCAGAGCGCATCGACACCGCAGAGCGCAACATCGAGGACGATACCTACCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGTTATCGCCGAGAAAGAGACCGATGAAGACGAAGAGAATCCGGTCAAGTACCTCGCTACGAACAA
AATCGACGCACCGACCGAGCACGTGATCCGCTCTTACGGGATGCGCTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCTTTGGAGAC
TGCGAGATGCAGACCGACGAAGGTGCCAGTCGTCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCTGAGTCGAGCGCCTTGGGGA
CTGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACACTCCCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGATCG
CGGTATCGATGACTTGATGACCGAGATCGACCACCTCTTCGTTCACTCAACCGCTGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa531276+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMPITEFLSCTRVFDEFESLSPAQRHHAKTYATGLVAASNKTVAGIAREVLPAKGKRALNKFFTEYDWDEQQFNHERLEELQKHGETRWSQGGYIILDDT
ITEKAGDEVPGVGHFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQDHDTKYDLAREIVTELEEEVGVPADTYLFDSWFAHDSGLVEHIE
SYGKDWIGPLRSNRQVTYGGEELSVDALAERIDTAERNIEDDTYHIWTKKLPVSQLGDVKLVIAEKETDEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGFGDCEMQTDEGASRHWHLLMAAYSLVRLDPESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGIDDLMTEIDHLFVHST
ADANVQS

 

Blast result :
Comments
ISHala1 is 95% aa similar to ISNpe1.
References
1] ISfinder submission (2012)
2] Jiang,X., Wang,S., Cheng,H., Huo,Y., Zhang,X., Zhu,X., Han,X., Ni,P. and Wu,M. (2011) J. Bacteriol. 193 (24), 7023-7024.