ISRm4-3
- Family IS5
- Group IS1031
Isoform Synonym(s) ISRm220-12-3
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF144039 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti 220-12 |
DNA section
IS Length : 934 bp
Ends
IR Length : 14/17
IRL : GAGGCTGACCGGAAAAGAGTTGAGTGAAATCAGTGAGTTGTGCTTCCGTC
IRR : GAGTCTGACTCGAAAAGTGATCAACGATAGCAATATCTTGCAAGCCGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGGCTGACCGGAAAAGAGTTGAGTGAAATCAGTGAGTTGTGCTTCCGTCGGATTTGCTTAAGATTCGATGGAGACCACGATGGCTTGGACTGATTTCAC
CCGACCGCAATATGCGCGACGGGCGCTGCGATATGCAAGTGATCTTACGGACCGCGAGTGGTCTTTAATCGCGCCGTTCATGCCCCCGCCCCGTCGGCTT
GGCAGACCGCGCAAGACCGATATGCGTGAGGTGGTGAACGCGCTGCTTTACATCGCGTCGACCGGTTGCCAATGGCGGATGCTGCCGAAGGACTTCCCGC
CATTTTCCACTGTCCAGGGCTATTTCTACGAATGGCGAGCGACCGACCTGTGGAACCGGATCAACCACCATCTCGTCATGGAGACACGGGAATTGGAGGG
AAGACAGGCCTCTCCCACAGCGGGTGTGATCGATAGTCAGAGTGTCAAAACCACCGAAAGCGGCGGCATTCGCGGCTTTGATGCGGGAAAGAAGATCAAC
GGCCGCAAGCGTCATATCATCGTCGACACGCTTGGCCTGATGGTCGGCCTCATGGTGCACGGAGCTGACGTTCAGGATCGCGACGGAGCGCCCGATCTCT
TGAAGTCCATCCGTCACAGATGGCCTTGGCTGCTTCATGTCTTTGCCGATGGTGGCTACGCGGGCGAAAAACTGAAGAGCCGACTGAAGAAAATCGGCAA
GTGGACACTCGACATCATCAAGCGCTCCGACAAGACCAAAGCGTTTGAGATCCTACCCCGCCGGTGGGTTGTCGAGCGCACATTTGCATGGCTGGGGCGA
TGCCGCAGGTTGGCGAAAGACTTCGAGAAATCCATCGCTTCAGCCCAGGCCTGGATCACAATCGCCCACATCCGCATGCTCACGAGGCGGCTTGCAAGAT
ATTGCTATCGTTGATCACTTTTCGAGTCAGACTC
CCGACCGCAATATGCGCGACGGGCGCTGCGATATGCAAGTGATCTTACGGACCGCGAGTGGTCTTTAATCGCGCCGTTCATGCCCCCGCCCCGTCGGCTT
GGCAGACCGCGCAAGACCGATATGCGTGAGGTGGTGAACGCGCTGCTTTACATCGCGTCGACCGGTTGCCAATGGCGGATGCTGCCGAAGGACTTCCCGC
CATTTTCCACTGTCCAGGGCTATTTCTACGAATGGCGAGCGACCGACCTGTGGAACCGGATCAACCACCATCTCGTCATGGAGACACGGGAATTGGAGGG
AAGACAGGCCTCTCCCACAGCGGGTGTGATCGATAGTCAGAGTGTCAAAACCACCGAAAGCGGCGGCATTCGCGGCTTTGATGCGGGAAAGAAGATCAAC
GGCCGCAAGCGTCATATCATCGTCGACACGCTTGGCCTGATGGTCGGCCTCATGGTGCACGGAGCTGACGTTCAGGATCGCGACGGAGCGCCCGATCTCT
TGAAGTCCATCCGTCACAGATGGCCTTGGCTGCTTCATGTCTTTGCCGATGGTGGCTACGCGGGCGAAAAACTGAAGAGCCGACTGAAGAAAATCGGCAA
GTGGACACTCGACATCATCAAGCGCTCCGACAAGACCAAAGCGTTTGAGATCCTACCCCGCCGGTGGGTTGTCGAGCGCACATTTGCATGGCTGGGGCGA
TGCCGCAGGTTGGCGAAAGACTTCGAGAAATCCATCGCTTCAGCCCAGGCCTGGATCACAATCGCCCACATCCGCATGCTCACGAGGCGGCTTGCAAGAT
ATTGCTATCGTTGATCACTTTTCGAGTCAGACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
834 bp | 277 aa | 81 | 914 | + | No |
Chemistry : DDE
ORF sequence :
MAWTDFTRPQYARRALRYASDLTDREWSLIAPFMPPPRRLGRPRKTDMREVVNALLYIASTGCQWRMLPKDFPPFSTVQGYFYEWRATDLWNRINHHLVM
ETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSIRHRWPWLLHVFADGGYAGEKLKS
RLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQAWITIAHIRMLTRRLARYCYR
ETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSIRHRWPWLLHVFADGGYAGEKLKS
RLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQAWITIAHIRMLTRRLARYCYR
Blast result :
Comments
ISRm220-12-3 is 90%aa similar with ISR12, 89% with ISpRm220-12-1, 93% with ISRm4-1 and 81% with IS1031A.
References
1] Selbitschka,W., Arnold,W., Bueschking,C., Fischer,S., Jording,D., Schneckener,S. and Puehler,A.(1999) Direct submission Genbank.