ISRm4-3

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRm220-12-3
Accession numberTranspositionOriginHost
AF144039 ND Sinorhizobium meliloti
Sinorhizobium meliloti 220-12
DNA section
IS Length : 934 bp

Ends


IR Length : 14/17

IRL : GAGGCTGACCGGAAAAGAGTTGAGTGAAATCAGTGAGTTGTGCTTCCGTC
IRR : GAGTCTGACTCGAAAAGTGATCAACGATAGCAATATCTTGCAAGCCGCCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGGCTGACCGGAAAAGAGTTGAGTGAAATCAGTGAGTTGTGCTTCCGTCGGATTTGCTTAAGATTCGATGGAGACCACGATGGCTTGGACTGATTTCAC
CCGACCGCAATATGCGCGACGGGCGCTGCGATATGCAAGTGATCTTACGGACCGCGAGTGGTCTTTAATCGCGCCGTTCATGCCCCCGCCCCGTCGGCTT
GGCAGACCGCGCAAGACCGATATGCGTGAGGTGGTGAACGCGCTGCTTTACATCGCGTCGACCGGTTGCCAATGGCGGATGCTGCCGAAGGACTTCCCGC
CATTTTCCACTGTCCAGGGCTATTTCTACGAATGGCGAGCGACCGACCTGTGGAACCGGATCAACCACCATCTCGTCATGGAGACACGGGAATTGGAGGG
AAGACAGGCCTCTCCCACAGCGGGTGTGATCGATAGTCAGAGTGTCAAAACCACCGAAAGCGGCGGCATTCGCGGCTTTGATGCGGGAAAGAAGATCAAC
GGCCGCAAGCGTCATATCATCGTCGACACGCTTGGCCTGATGGTCGGCCTCATGGTGCACGGAGCTGACGTTCAGGATCGCGACGGAGCGCCCGATCTCT
TGAAGTCCATCCGTCACAGATGGCCTTGGCTGCTTCATGTCTTTGCCGATGGTGGCTACGCGGGCGAAAAACTGAAGAGCCGACTGAAGAAAATCGGCAA
GTGGACACTCGACATCATCAAGCGCTCCGACAAGACCAAAGCGTTTGAGATCCTACCCCGCCGGTGGGTTGTCGAGCGCACATTTGCATGGCTGGGGCGA
TGCCGCAGGTTGGCGAAAGACTTCGAGAAATCCATCGCTTCAGCCCAGGCCTGGATCACAATCGCCCACATCCGCATGCTCACGAGGCGGCTTGCAAGAT
ATTGCTATCGTTGATCACTTTTCGAGTCAGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
834 bp277 aa81914+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAWTDFTRPQYARRALRYASDLTDREWSLIAPFMPPPRRLGRPRKTDMREVVNALLYIASTGCQWRMLPKDFPPFSTVQGYFYEWRATDLWNRINHHLVM
ETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSIRHRWPWLLHVFADGGYAGEKLKS
RLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQAWITIAHIRMLTRRLARYCYR

 

Blast result :
Comments
ISRm220-12-3 is 90%aa similar with ISR12, 89% with ISpRm220-12-1, 93% with ISRm4-1 and 81% with IS1031A.
References
1] Selbitschka,W., Arnold,W., Bueschking,C., Fischer,S., Jording,D., Schneckener,S. and Puehler,A.(1999) Direct submission Genbank.