ISRm4
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X65471 | ND | Rhizobium meliloti | Rhizobium meliloti GR4 |
DNA section
IS Length : 933 bp
Ends
IR Length : 12/17
IRL : GAGGCTGACCGAAAAAGAGTTGAGTGAAATCAGTGAGTTGTGATTCCGTC
IRR : GAGTCGGACTCGAAAAGTGATCAACGATAGCAATATCTTGCAAGCCGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCTCGGTC | TTA | GAGGCTGCCT | 3 |
DNA sequence
GAGGCTGACCGAAAAAGAGTTGAGTGAAATCAGTGAGTTGTGATTCCGTCGGATTTGCTTAAGATTCGATGGAGACCACGATGGCTTGGACTGATTTCAC
CCGACCGCAATATGCGCGACGGGCGCTGCGATATGCAAGTGATCTTACGGACCGCGAGTGGTCTTTAATCGCGCCGTTCATGCCCCCGCCCCGTCGGCTT
GGCAGACCGCGCAAGACCGATATGCGTGAGGTGGTGAACGCGTTGCTTTACATCGCGTCGACCGGTTGCCAATGGCGGATGCTGCCGAAGGACTTCCCGC
CATTTTCCACTGTCCAGGGCTATTTCTACGAATGGCGAGCGACCGAGCTGTGGAACCGGATCAACCACCATCTCGTCATGGAGACACGGGAATTGGAGGG
AAGACAGGCCTCTCCCACAGCGGGTGTGATCGATAGTCAGAGTGTCAAAACCACCGAAAGCGGCGGCATTCGCGGCTTTGATGCGGGAAAGAAGATCAAC
GGCCGCAAGCGTCATATCATCGTCGACACGCTTGGCCTGATGGTCGGCCTCATGGTGCACGGGGCTGACGTTCAGGATCGCGACGGAGCGCCCGATCTCT
TGAAGTCCATCCGTCACAGATGGCCTGGCTGCTTCATGTCTTTGCCGATGGTGGCTACGCGGGCGAAAAGCTGAAGAGCCGACTGAAGAAAATCGGCAAG
TGGACACTCGACATCATCAAGCGCTCCGACAAGACCAAAGCGTTTGAGATCCTACCCCGCCGGTGGGTTGTCGAGCGCACATTTGCATGGCTGGGGCGAT
GCCGCAGGCTGGCGAAAGACTTCGAGAAATCCATCGCTTCAGCCCAGGCCTGGATCACAATCGCCCACATCCGCATGCTCACGAGGCGGCTTGCAAGATA
TTGCTATCGTTGATCACTTTTCGAGTCCGACTC
CCGACCGCAATATGCGCGACGGGCGCTGCGATATGCAAGTGATCTTACGGACCGCGAGTGGTCTTTAATCGCGCCGTTCATGCCCCCGCCCCGTCGGCTT
GGCAGACCGCGCAAGACCGATATGCGTGAGGTGGTGAACGCGTTGCTTTACATCGCGTCGACCGGTTGCCAATGGCGGATGCTGCCGAAGGACTTCCCGC
CATTTTCCACTGTCCAGGGCTATTTCTACGAATGGCGAGCGACCGAGCTGTGGAACCGGATCAACCACCATCTCGTCATGGAGACACGGGAATTGGAGGG
AAGACAGGCCTCTCCCACAGCGGGTGTGATCGATAGTCAGAGTGTCAAAACCACCGAAAGCGGCGGCATTCGCGGCTTTGATGCGGGAAAGAAGATCAAC
GGCCGCAAGCGTCATATCATCGTCGACACGCTTGGCCTGATGGTCGGCCTCATGGTGCACGGGGCTGACGTTCAGGATCGCGACGGAGCGCCCGATCTCT
TGAAGTCCATCCGTCACAGATGGCCTGGCTGCTTCATGTCTTTGCCGATGGTGGCTACGCGGGCGAAAAGCTGAAGAGCCGACTGAAGAAAATCGGCAAG
TGGACACTCGACATCATCAAGCGCTCCGACAAGACCAAAGCGTTTGAGATCCTACCCCGCCGGTGGGTTGTCGAGCGCACATTTGCATGGCTGGGGCGAT
GCCGCAGGCTGGCGAAAGACTTCGAGAAATCCATCGCTTCAGCCCAGGCCTGGATCACAATCGCCCACATCCGCATGCTCACGAGGCGGCTTGCAAGATA
TTGCTATCGTTGATCACTTTTCGAGTCCGACTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
845 bp | 281 aa | 69 | 913 | + | Yes |
Chemistry : DDE
ORF sequence :
METTMAWTDFTRPQYARRALRYASDLTDREWSLIAPFMPPPRRLGRPRKTDMREVVNALLYIASTGCQWRMLPKDFPPFSTVQGYFYEWRATELWNRINH
HLVMETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSIRHRWPWLLHVFADGGYAGE
KLKSRLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQAWITIAHIRMLTRRLARYCYR
HLVMETRELEGRQASPTAGVIDSQSVKTTESGGIRGFDAGKKINGRKRHIIVDTLGLMVGLMVHGADVQDRDGAPDLLKSIRHRWPWLLHVFADGGYAGE
KLKSRLKKIGKWTLDIIKRSDKTKAFEILPRRWVVERTFAWLGRCRRLAKDFEKSIASAQAWITIAHIRMLTRRLARYCYR
Blast result :
Comments
One frameshift has been introduced into ISRm4 sequence, as suggested by comparison to its closest relative, ISRl2 (80 % identity at the protein level). The proposed ORF corresponds to (69-626) fused to (626-913).
References
1] Soto, M.J., Zorzano, A., Olivares, J., and Toro, N. (1992) Gene 120, 125-126.