ISRm3G

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRm3
Accession numberTranspositionOriginHost
X63715 ND Rhizobium meliloti
Rhizobium meliloti GR4
Rhizobium meliloti GR4 plasmid pRmeGR4b
DNA section
IS Length : 1298 bp

Ends


IR Length : 30

IRL : GGGACTGTCAGGAATTCTGTGCGGTGGGCCATGATGATGAAAAGGAGAGA
IRR : GGGACTGTCAGGAATTCTGTGCGGTGGGCCGGTTTCATCAGTTGAAGAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CAGGCGATGCTCCGC9

DNA sequence

GGGACTGTCAGGAATTCTGTGCGGTGGGCCATGATGATGAAAAGGAGAGAATCATCACATGGCTATCGAGAAAGAACTTCTGGACCAGCTCCTGGTTGGA
CGTGATCCGTCCGAGGTTTTCGGCAAGGACGGTTTGCTGGACGATCTGAAGAAGGCGCTTTCAGAGCGCATCCTCAATGCGGAACTTGACGACCATCTCG
ACGTCGAGCGCCTGGAGGGCGGCCCCGCCAACAGGCGCAACGGTTCCTCCAAGAAGACGGTTTTGACTGGCACATCGAAGATGACGCTGACCATCCCGCG
CGATCGGGCGGGTACCTTCGACCCAAAGCTGATCGCCAGGTATCAGCGCCGGTTTCCCGATTTCGACGATAAGATCATTTCGATGTACGCCCGTGGTATG
ACAGTGCGCGAGATTCAGGGGCATCTTGAAGAGCTCTACGGCATCGATGTGTCGCCGGATCTGATCTCGGCGGTGACCGATACGGTTCTGGAGGCCGTCG
GAGAGTGGCAAAACCGGCCGCTCGAGCTTTGCTACCCCCTCGTGTTTTTCGACGCCATCCGGGTCAAGATCAGAGACGAGGGCTTCGTACGCAACAAAGC
CGTCTATGTCGCCCTGGCCGTGCTCGCTGACGGCAGCAAGGAGATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTGCGGGTCATG
AACGAGCTGAAGAACCGCGGTTGCCAGGATATCCTAATCGCCGTGGTCGACGGCTTGAAGGGCTTCCCCGAGGCTATCACCGCCGTCTTTCCCCAAACAA
TCGTCCAGACCTGCATCGTCCACCTGATCCGGCACTCGTTGGAGTTCGTATCCTACAAGGATAGAAGGACCGTTGTGCCGGCGTTGAGAGCCATCTACCG
CGCCCGAGATGCCGAGGCGGGCCTGAAGGCGCTGGAGGCCTTCGAGGAAGGGTACTGGGGCCAGAAATATCCCGCTATCGCTCAAAGCTGGCGGCGCAAC
TGGGAACACGTCGTTCCCTTCTTCGCCTTCCCCGAAGGGGTCCGCCGCATCATCTACACGACGAACGCAATAGAGGCCCTCAACTCGAAGCTTCGGCGAG
CTGTGCGTTCCCGCGGGCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTCGTTCTTAACAACGCGGCCGAGCAATGGAAACGGGCGCCGCG
GGAATGGGTCGAGGCAAAGACACAGTTCGCCGTCATCTTTGGCGAGCGGTTCTTCAACTGATGAAACCGGCCCACCGCACAGAATTCCTGACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa591261+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIEKELLDQLLVGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFP
DFDDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLW
IEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN

 

Blast result :
Comments
ISRm3G has 7 nt (1 aa) differences with ISRm3.
References
1] Soto, M.J., Zorzano, A., Olivares, J., and Toro, N. (1992) Plant Mol. Biol. 20, 307- 309.