ISRm3G
- Family IS256
- Group
Isoform Synonym(s) ISRm3
Accession number | Transposition | Origin | Host |
---|---|---|---|
X63715 | ND | Rhizobium meliloti | Rhizobium meliloti GR4 Rhizobium meliloti GR4 plasmid pRmeGR4b |
DNA section
IS Length : 1298 bp
Ends
IR Length : 30
IRL : GGGACTGTCAGGAATTCTGTGCGGTGGGCCATGATGATGAAAAGGAGAGA
IRR : GGGACTGTCAGGAATTCTGTGCGGTGGGCCGGTTTCATCAGTTGAAGAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAG | GCGATGCTC | CGC | 9 |
DNA sequence
GGGACTGTCAGGAATTCTGTGCGGTGGGCCATGATGATGAAAAGGAGAGAATCATCACATGGCTATCGAGAAAGAACTTCTGGACCAGCTCCTGGTTGGA
CGTGATCCGTCCGAGGTTTTCGGCAAGGACGGTTTGCTGGACGATCTGAAGAAGGCGCTTTCAGAGCGCATCCTCAATGCGGAACTTGACGACCATCTCG
ACGTCGAGCGCCTGGAGGGCGGCCCCGCCAACAGGCGCAACGGTTCCTCCAAGAAGACGGTTTTGACTGGCACATCGAAGATGACGCTGACCATCCCGCG
CGATCGGGCGGGTACCTTCGACCCAAAGCTGATCGCCAGGTATCAGCGCCGGTTTCCCGATTTCGACGATAAGATCATTTCGATGTACGCCCGTGGTATG
ACAGTGCGCGAGATTCAGGGGCATCTTGAAGAGCTCTACGGCATCGATGTGTCGCCGGATCTGATCTCGGCGGTGACCGATACGGTTCTGGAGGCCGTCG
GAGAGTGGCAAAACCGGCCGCTCGAGCTTTGCTACCCCCTCGTGTTTTTCGACGCCATCCGGGTCAAGATCAGAGACGAGGGCTTCGTACGCAACAAAGC
CGTCTATGTCGCCCTGGCCGTGCTCGCTGACGGCAGCAAGGAGATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTGCGGGTCATG
AACGAGCTGAAGAACCGCGGTTGCCAGGATATCCTAATCGCCGTGGTCGACGGCTTGAAGGGCTTCCCCGAGGCTATCACCGCCGTCTTTCCCCAAACAA
TCGTCCAGACCTGCATCGTCCACCTGATCCGGCACTCGTTGGAGTTCGTATCCTACAAGGATAGAAGGACCGTTGTGCCGGCGTTGAGAGCCATCTACCG
CGCCCGAGATGCCGAGGCGGGCCTGAAGGCGCTGGAGGCCTTCGAGGAAGGGTACTGGGGCCAGAAATATCCCGCTATCGCTCAAAGCTGGCGGCGCAAC
TGGGAACACGTCGTTCCCTTCTTCGCCTTCCCCGAAGGGGTCCGCCGCATCATCTACACGACGAACGCAATAGAGGCCCTCAACTCGAAGCTTCGGCGAG
CTGTGCGTTCCCGCGGGCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTCGTTCTTAACAACGCGGCCGAGCAATGGAAACGGGCGCCGCG
GGAATGGGTCGAGGCAAAGACACAGTTCGCCGTCATCTTTGGCGAGCGGTTCTTCAACTGATGAAACCGGCCCACCGCACAGAATTCCTGACAGTCCC
CGTGATCCGTCCGAGGTTTTCGGCAAGGACGGTTTGCTGGACGATCTGAAGAAGGCGCTTTCAGAGCGCATCCTCAATGCGGAACTTGACGACCATCTCG
ACGTCGAGCGCCTGGAGGGCGGCCCCGCCAACAGGCGCAACGGTTCCTCCAAGAAGACGGTTTTGACTGGCACATCGAAGATGACGCTGACCATCCCGCG
CGATCGGGCGGGTACCTTCGACCCAAAGCTGATCGCCAGGTATCAGCGCCGGTTTCCCGATTTCGACGATAAGATCATTTCGATGTACGCCCGTGGTATG
ACAGTGCGCGAGATTCAGGGGCATCTTGAAGAGCTCTACGGCATCGATGTGTCGCCGGATCTGATCTCGGCGGTGACCGATACGGTTCTGGAGGCCGTCG
GAGAGTGGCAAAACCGGCCGCTCGAGCTTTGCTACCCCCTCGTGTTTTTCGACGCCATCCGGGTCAAGATCAGAGACGAGGGCTTCGTACGCAACAAAGC
CGTCTATGTCGCCCTGGCCGTGCTCGCTGACGGCAGCAAGGAGATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTGCGGGTCATG
AACGAGCTGAAGAACCGCGGTTGCCAGGATATCCTAATCGCCGTGGTCGACGGCTTGAAGGGCTTCCCCGAGGCTATCACCGCCGTCTTTCCCCAAACAA
TCGTCCAGACCTGCATCGTCCACCTGATCCGGCACTCGTTGGAGTTCGTATCCTACAAGGATAGAAGGACCGTTGTGCCGGCGTTGAGAGCCATCTACCG
CGCCCGAGATGCCGAGGCGGGCCTGAAGGCGCTGGAGGCCTTCGAGGAAGGGTACTGGGGCCAGAAATATCCCGCTATCGCTCAAAGCTGGCGGCGCAAC
TGGGAACACGTCGTTCCCTTCTTCGCCTTCCCCGAAGGGGTCCGCCGCATCATCTACACGACGAACGCAATAGAGGCCCTCAACTCGAAGCTTCGGCGAG
CTGTGCGTTCCCGCGGGCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTCGTTCTTAACAACGCGGCCGAGCAATGGAAACGGGCGCCGCG
GGAATGGGTCGAGGCAAAGACACAGTTCGCCGTCATCTTTGGCGAGCGGTTCTTCAACTGATGAAACCGGCCCACCGCACAGAATTCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 59 | 1261 | + | No |
Chemistry : DDE
ORF sequence :
MAIEKELLDQLLVGRDPSEVFGKDGLLDDLKKALSERILNAELDDHLDVERLEGGPANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFP
DFDDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLW
IEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
DFDDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLW
IEQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
Blast result :
Comments
ISRm3G has 7 nt (1 aa) differences with ISRm3.
References
1] Soto, M.J., Zorzano, A., Olivares, J., and Toro, N. (1992) Plant Mol. Biol. 20, 307- 309.