ISRm13
- Family IS5
- Group IS5
Isoform Synonym(s) ISRm220-13-5
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF087642 | ND | Sinorhizobium meliloti | Sinorhizobium medicae WSM419 plasmid pSMED02 Sinorhizobium medicae WSM419 Sinorhizobium meliloti 220-13 Sinorhizobium medicae WSM419 plasmid pSMED01 |
DNA section
IS Length : 1550 bp
Ends
IR Length : 16
IRL : GTCGTCCGTGAACTATCCGTACTCTGTTGACAACACTATGTAATCTGCGC
IRR : GTCGACCGTGAACAATGATCGGCGCTAAGCAGCGTTCGGATTGGCTGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGTCCGCCG | TTCTTA | AGGATAAACG | 6 |
ACCTCGCGGC | CACAGC | GGCCGGTAAA | 6 |
GTTCCCCCTC | GAACATC | CGGGGGAGTG | 7 |
DNA sequence
GTCGTCCGTGAACTATCCGTACTCTGTTGACAACACTATGTAATCTGCGCTTTCCGGCGGCGCAGTGTTGCAAGAAAAGCTCTGGTTAAGAATGGTTTTC
CTGCAATTTGATTTTGCGGTTTTCTGGTCCGGCGCGGCGTGATTCACTTGTTTTAGCGGCGGTGAATCGAGGAGCGGCGATGTCGAGACCACGCGAGCGG
CGCGAGACGGGGGAGCAGGATCTGTTCCGCTCCCGGCTGGATCAGATCATCAACATGAGGCACGAACTGGTGCGGCTGGCGCAGGCGATCGACTGGCCGC
TGTTGGAGGGCCGCTTCGGCGAGGTCTATTGCGATGGCCCCGGCATGCCGCCGCTGCCGACGCGGCTGATGGCGGGGCTGGCGATCCTTAAGCACACGTT
CGACCTGTCGGACGAGGAGGTTGTGTGCCGCTGGGTGGAGAACCCCTATTTCCAGTATCTCTGCGGCGAGGAATTCTTCCGCCACGACCTGCCCTTCGAC
CGCTCGTCGATGACGCGCTGGCGGGCGCGCATGGGCGAGGAGCGACTGACGGCGCTGTTGCAGGAAAGCCTGGCGGTGGCGGTCAAGACCGGGGCGATGC
AGCCGCAGGATACGCGCCGGGTAATCGTCGACACCACCGTGCAGCCGAAGAACGTGATGTTTCCGACCGACGCGAAACTCCTCCATCGGGCGGCCGCGAG
GCTCGTCCGCCTAGCCAAAAAGGCAGGGTTGACCTTGCGGCAATCCTACATACGGGTCGGCAAGCTGGCGCTGATCAAGCACCAGCGCTACGCCCACGCC
AAACAGTTCAAACGGGCCAACAAGGCGTTGCGGACGCTCAGGACCTATCTCGGCCGCACCATTCGCGACATTCGCCGCCAGATCGGCGATGATGAGAAGC
TGCGGTCGATCTTCCTGTGGCCGCTGCACCAGGCCTCGACGGTTCTGGAGCAGAGGCAACGCCAGCGCGGCCGCAAGATCTACAGCCTGCATGCGCCGGA
GGTCGAATGCATCGGCAAGGGCAAGGCGCACCGGCCGTACGAGTTCGGCGTCAAGGTCTCGGTCGCCACCACGCTGAAACGTTCGAAGGGTGGCCAGTTC
GCCCTGCATGCGAAAGCCATGCCCGGCAATCCCTATGACGGCCATACGCTGGCAACGGTGATCCCGGAGATGGAGAAAACCGTCGGCAATGAGATCGCCC
GCATCCTCGCCGACGCCGGCTACCGCGGCCACAATGCCCCCGCCAGCCACCGGTTCCGGATCTTCACCAGCGGTCAGAAACGCCGCGTCACGCTAGCGAT
CAAGCGCGAGATGCGGCGGCGTTCGGCCATCGAGCCGGTCATCGGTCATCTCAAGGCAGAGCACCGCATGGGCCGCAACTACCTCGCAGGCCAACACGGT
GACGCCATCAACGCTGTGTTGGCAGCAGCCGGCTACAACTTCTCGCTCCTCCTCAACTGGTTGAGGCAATTTTTTTGGCTGCTCTTCGCCTGGGTGCACG
CCGCAGCCAATCCGAACGCTGCTTAGCGCCGATCATTGTTCACGGTCGAC
CTGCAATTTGATTTTGCGGTTTTCTGGTCCGGCGCGGCGTGATTCACTTGTTTTAGCGGCGGTGAATCGAGGAGCGGCGATGTCGAGACCACGCGAGCGG
CGCGAGACGGGGGAGCAGGATCTGTTCCGCTCCCGGCTGGATCAGATCATCAACATGAGGCACGAACTGGTGCGGCTGGCGCAGGCGATCGACTGGCCGC
TGTTGGAGGGCCGCTTCGGCGAGGTCTATTGCGATGGCCCCGGCATGCCGCCGCTGCCGACGCGGCTGATGGCGGGGCTGGCGATCCTTAAGCACACGTT
CGACCTGTCGGACGAGGAGGTTGTGTGCCGCTGGGTGGAGAACCCCTATTTCCAGTATCTCTGCGGCGAGGAATTCTTCCGCCACGACCTGCCCTTCGAC
CGCTCGTCGATGACGCGCTGGCGGGCGCGCATGGGCGAGGAGCGACTGACGGCGCTGTTGCAGGAAAGCCTGGCGGTGGCGGTCAAGACCGGGGCGATGC
AGCCGCAGGATACGCGCCGGGTAATCGTCGACACCACCGTGCAGCCGAAGAACGTGATGTTTCCGACCGACGCGAAACTCCTCCATCGGGCGGCCGCGAG
GCTCGTCCGCCTAGCCAAAAAGGCAGGGTTGACCTTGCGGCAATCCTACATACGGGTCGGCAAGCTGGCGCTGATCAAGCACCAGCGCTACGCCCACGCC
AAACAGTTCAAACGGGCCAACAAGGCGTTGCGGACGCTCAGGACCTATCTCGGCCGCACCATTCGCGACATTCGCCGCCAGATCGGCGATGATGAGAAGC
TGCGGTCGATCTTCCTGTGGCCGCTGCACCAGGCCTCGACGGTTCTGGAGCAGAGGCAACGCCAGCGCGGCCGCAAGATCTACAGCCTGCATGCGCCGGA
GGTCGAATGCATCGGCAAGGGCAAGGCGCACCGGCCGTACGAGTTCGGCGTCAAGGTCTCGGTCGCCACCACGCTGAAACGTTCGAAGGGTGGCCAGTTC
GCCCTGCATGCGAAAGCCATGCCCGGCAATCCCTATGACGGCCATACGCTGGCAACGGTGATCCCGGAGATGGAGAAAACCGTCGGCAATGAGATCGCCC
GCATCCTCGCCGACGCCGGCTACCGCGGCCACAATGCCCCCGCCAGCCACCGGTTCCGGATCTTCACCAGCGGTCAGAAACGCCGCGTCACGCTAGCGAT
CAAGCGCGAGATGCGGCGGCGTTCGGCCATCGAGCCGGTCATCGGTCATCTCAAGGCAGAGCACCGCATGGGCCGCAACTACCTCGCAGGCCAACACGGT
GACGCCATCAACGCTGTGTTGGCAGCAGCCGGCTACAACTTCTCGCTCCTCCTCAACTGGTTGAGGCAATTTTTTTGGCTGCTCTTCGCCTGGGTGCACG
CCGCAGCCAATCCGAACGCTGCTTAGCGCCGATCATTGTTCACGGTCGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 180 | 1526 | + | No |
Chemistry : DDE
ORF sequence :
MSRPRERRETGEQDLFRSRLDQIINMRHELVRLAQAIDWPLLEGRFGEVYCDGPGMPPLPTRLMAGLAILKHTFDLSDEEVVCRWVENPYFQYLCGEEFF
RHDLPFDRSSMTRWRARMGEERLTALLQESLAVAVKTGAMQPQDTRRVIVDTTVQPKNVMFPTDAKLLHRAAARLVRLAKKAGLTLRQSYIRVGKLALIK
HQRYAHAKQFKRANKALRTLRTYLGRTIRDIRRQIGDDEKLRSIFLWPLHQASTVLEQRQRQRGRKIYSLHAPEVECIGKGKAHRPYEFGVKVSVATTLK
RSKGGQFALHAKAMPGNPYDGHTLATVIPEMEKTVGNEIARILADAGYRGHNAPASHRFRIFTSGQKRRVTLAIKREMRRRSAIEPVIGHLKAEHRMGRN
YLAGQHGDAINAVLAAAGYNFSLLLNWLRQFFWLLFAWVHAAANPNAA
RHDLPFDRSSMTRWRARMGEERLTALLQESLAVAVKTGAMQPQDTRRVIVDTTVQPKNVMFPTDAKLLHRAAARLVRLAKKAGLTLRQSYIRVGKLALIK
HQRYAHAKQFKRANKALRTLRTYLGRTIRDIRRQIGDDEKLRSIFLWPLHQASTVLEQRQRQRGRKIYSLHAPEVECIGKGKAHRPYEFGVKVSVATTLK
RSKGGQFALHAKAMPGNPYDGHTLATVIPEMEKTVGNEIARILADAGYRGHNAPASHRFRIFTSGQKRRVTLAIKREMRRRSAIEPVIGHLKAEHRMGRN
YLAGQHGDAINAVLAAAGYNFSLLLNWLRQFFWLLFAWVHAAANPNAA
Blast result :
Comments
The authors have proposed that the sequence forms part of a new family of IS, closely IS52 (42% identical + similar) and IS1478 ( 57% identical + similar).
References
1] Selbitschka, W., Zekri, S., Schoeder, G., Puehler, A. and Toro, N. (1999) FEMS Microbiol. Lett. 172, 1-7.
2] Selbitschka, W., Zekri, S., Schoeder, G., Puehler, A. and Toro, N. Direct submission.
2] Selbitschka, W., Zekri, S., Schoeder, G., Puehler, A. and Toro, N. Direct submission.