ISRm13

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRm220-13-5
Accession numberTranspositionOriginHost
AF087642 ND Sinorhizobium meliloti
Sinorhizobium medicae WSM419 plasmid pSMED02
Sinorhizobium medicae WSM419
Sinorhizobium meliloti 220-13
Sinorhizobium medicae WSM419 plasmid pSMED01
DNA section
IS Length : 1550 bp

Ends


IR Length : 16

IRL : GTCGTCCGTGAACTATCCGTACTCTGTTGACAACACTATGTAATCTGCGC
IRR : GTCGACCGTGAACAATGATCGGCGCTAAGCAGCGTTCGGATTGGCTGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
CCGTCCGCCGTTCTTAAGGATAAACG6
ACCTCGCGGCCACAGCGGCCGGTAAA6
GTTCCCCCTCGAACATCCGGGGGAGTG7

DNA sequence

GTCGTCCGTGAACTATCCGTACTCTGTTGACAACACTATGTAATCTGCGCTTTCCGGCGGCGCAGTGTTGCAAGAAAAGCTCTGGTTAAGAATGGTTTTC
CTGCAATTTGATTTTGCGGTTTTCTGGTCCGGCGCGGCGTGATTCACTTGTTTTAGCGGCGGTGAATCGAGGAGCGGCGATGTCGAGACCACGCGAGCGG
CGCGAGACGGGGGAGCAGGATCTGTTCCGCTCCCGGCTGGATCAGATCATCAACATGAGGCACGAACTGGTGCGGCTGGCGCAGGCGATCGACTGGCCGC
TGTTGGAGGGCCGCTTCGGCGAGGTCTATTGCGATGGCCCCGGCATGCCGCCGCTGCCGACGCGGCTGATGGCGGGGCTGGCGATCCTTAAGCACACGTT
CGACCTGTCGGACGAGGAGGTTGTGTGCCGCTGGGTGGAGAACCCCTATTTCCAGTATCTCTGCGGCGAGGAATTCTTCCGCCACGACCTGCCCTTCGAC
CGCTCGTCGATGACGCGCTGGCGGGCGCGCATGGGCGAGGAGCGACTGACGGCGCTGTTGCAGGAAAGCCTGGCGGTGGCGGTCAAGACCGGGGCGATGC
AGCCGCAGGATACGCGCCGGGTAATCGTCGACACCACCGTGCAGCCGAAGAACGTGATGTTTCCGACCGACGCGAAACTCCTCCATCGGGCGGCCGCGAG
GCTCGTCCGCCTAGCCAAAAAGGCAGGGTTGACCTTGCGGCAATCCTACATACGGGTCGGCAAGCTGGCGCTGATCAAGCACCAGCGCTACGCCCACGCC
AAACAGTTCAAACGGGCCAACAAGGCGTTGCGGACGCTCAGGACCTATCTCGGCCGCACCATTCGCGACATTCGCCGCCAGATCGGCGATGATGAGAAGC
TGCGGTCGATCTTCCTGTGGCCGCTGCACCAGGCCTCGACGGTTCTGGAGCAGAGGCAACGCCAGCGCGGCCGCAAGATCTACAGCCTGCATGCGCCGGA
GGTCGAATGCATCGGCAAGGGCAAGGCGCACCGGCCGTACGAGTTCGGCGTCAAGGTCTCGGTCGCCACCACGCTGAAACGTTCGAAGGGTGGCCAGTTC
GCCCTGCATGCGAAAGCCATGCCCGGCAATCCCTATGACGGCCATACGCTGGCAACGGTGATCCCGGAGATGGAGAAAACCGTCGGCAATGAGATCGCCC
GCATCCTCGCCGACGCCGGCTACCGCGGCCACAATGCCCCCGCCAGCCACCGGTTCCGGATCTTCACCAGCGGTCAGAAACGCCGCGTCACGCTAGCGAT
CAAGCGCGAGATGCGGCGGCGTTCGGCCATCGAGCCGGTCATCGGTCATCTCAAGGCAGAGCACCGCATGGGCCGCAACTACCTCGCAGGCCAACACGGT
GACGCCATCAACGCTGTGTTGGCAGCAGCCGGCTACAACTTCTCGCTCCTCCTCAACTGGTTGAGGCAATTTTTTTGGCTGCTCTTCGCCTGGGTGCACG
CCGCAGCCAATCCGAACGCTGCTTAGCGCCGATCATTGTTCACGGTCGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa1801526+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPRERRETGEQDLFRSRLDQIINMRHELVRLAQAIDWPLLEGRFGEVYCDGPGMPPLPTRLMAGLAILKHTFDLSDEEVVCRWVENPYFQYLCGEEFF
RHDLPFDRSSMTRWRARMGEERLTALLQESLAVAVKTGAMQPQDTRRVIVDTTVQPKNVMFPTDAKLLHRAAARLVRLAKKAGLTLRQSYIRVGKLALIK
HQRYAHAKQFKRANKALRTLRTYLGRTIRDIRRQIGDDEKLRSIFLWPLHQASTVLEQRQRQRGRKIYSLHAPEVECIGKGKAHRPYEFGVKVSVATTLK
RSKGGQFALHAKAMPGNPYDGHTLATVIPEMEKTVGNEIARILADAGYRGHNAPASHRFRIFTSGQKRRVTLAIKREMRRRSAIEPVIGHLKAEHRMGRN
YLAGQHGDAINAVLAAAGYNFSLLLNWLRQFFWLLFAWVHAAANPNAA

 

Blast result :
Comments
The authors have proposed that the sequence forms part of a new family of IS, closely IS52 (42% identical + similar) and IS1478 ( 57% identical + similar).
References
1] Selbitschka, W., Zekri, S., Schoeder, G., Puehler, A. and Toro, N. (1999) FEMS Microbiol. Lett. 172, 1-7.
2] Selbitschka, W., Zekri, S., Schoeder, G., Puehler, A. and Toro, N. Direct submission.