ISRm10
- Family IS630
- Group
Isoform Synonym(s) ISRm10-2
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF143444 | ND | Sinorhizobium meliloti | Sinorhizobium meliloti BE31CC plasmid pSym |
DNA section
IS Length : 1047 bp
Ends
IR Length : 13/14
IRL : AGCGGAACCCGATCTGATTGAATCGTTTTGGCTATGCAAATCAGTTTTGG
IRR : AGCGGAATCCGATCACGCTGCATCATAGCCTGCGGCTGCGAAATAGTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CTAG | NNNNNNNNNN | 4 |
DNA sequence
AGCGGAACCCGATCTGATTGAATCGTTTTGGCTATGCAAATCAGTTTTGGTCTGATTCATAGACGTCCGCCGTGTGGAGGCGGCGGACATGTCGAAGGCT
TTATCGATGGATTTGCGGGTCCGGGTTCTGGCGGCGGTCGGCCAGGGCCTGTCGCACCGAGCTGCAGCGGAACGTTTTGGTGTGAGCGCTGCCAGTATCA
GCCGCTGGCGCAGTCGTGAGCGTGAACAGGGCGACGCCCGGCCCAAGGCGCTTGGCGGCGATCGTCGCTCGGGTCGGATCGATGCACATATGAGTGTTAT
CGTCGAAGCCTTGGGCCCGGAGAAGGACGCTACCTTGGAAGAGGTACGCCGCAGTCTGGCGGATCGGGGTCTCTTCTTCGGCTTCGGGACGATCCAGCGT
TTCTTCAAGCGGCACAACATCACGCGCAAAAAAAGAGTGCGCATGCCTCGGAGCAAAACCGGCCTGACATCCTGAAGCGGCGGCAAGACTGGTTCGACGG
CCAACTTGACCTTGATCCGGAACGTCTCGTTTTTATCGATGAGACCTGGGCTTCCACCAACATGGCGCGCCGCTACGGTCGATGCCGCATAGGCGAACGC
TTGCGGATCAGAGTCCCTCATGGTCACTGGAAAACGACAACCTTCATCGGCGCTCTGACGGTGCGCGGCTTTATCGCCCCCTTTGTCATCGACAGGCCCA
TTAACCGCCTTTCGTTCGAGACTTACGTCGAGAAGGTGCTGCTGCCCGAGCTGCGCCCCGATGACGTGGTCGTTATGGACAATCTCTCCAGCCACAAAGG
GCCAAGGGTTCGCGAAATGATCGAAAGCGTTGGTGCGAAGCTAGAGTACCTCCCACCGTACAGCCCCGATTTCAACCCGATCGAAAACGCATTCTCAAAG
CTCAAAGCCCTGTTGAGAAAAGCCGCCGAACGGTCCATCGAGAGCCTCTGGACAACAATCGGGCGACTACTCCAACTCTTCACCCCAGACGAATGCCGCA
ACTATTTCGCAGCCGCAGGCTATGATGCAGCGTGATCGGATTCCGCT
TTATCGATGGATTTGCGGGTCCGGGTTCTGGCGGCGGTCGGCCAGGGCCTGTCGCACCGAGCTGCAGCGGAACGTTTTGGTGTGAGCGCTGCCAGTATCA
GCCGCTGGCGCAGTCGTGAGCGTGAACAGGGCGACGCCCGGCCCAAGGCGCTTGGCGGCGATCGTCGCTCGGGTCGGATCGATGCACATATGAGTGTTAT
CGTCGAAGCCTTGGGCCCGGAGAAGGACGCTACCTTGGAAGAGGTACGCCGCAGTCTGGCGGATCGGGGTCTCTTCTTCGGCTTCGGGACGATCCAGCGT
TTCTTCAAGCGGCACAACATCACGCGCAAAAAAAGAGTGCGCATGCCTCGGAGCAAAACCGGCCTGACATCCTGAAGCGGCGGCAAGACTGGTTCGACGG
CCAACTTGACCTTGATCCGGAACGTCTCGTTTTTATCGATGAGACCTGGGCTTCCACCAACATGGCGCGCCGCTACGGTCGATGCCGCATAGGCGAACGC
TTGCGGATCAGAGTCCCTCATGGTCACTGGAAAACGACAACCTTCATCGGCGCTCTGACGGTGCGCGGCTTTATCGCCCCCTTTGTCATCGACAGGCCCA
TTAACCGCCTTTCGTTCGAGACTTACGTCGAGAAGGTGCTGCTGCCCGAGCTGCGCCCCGATGACGTGGTCGTTATGGACAATCTCTCCAGCCACAAAGG
GCCAAGGGTTCGCGAAATGATCGAAAGCGTTGGTGCGAAGCTAGAGTACCTCCCACCGTACAGCCCCGATTTCAACCCGATCGAAAACGCATTCTCAAAG
CTCAAAGCCCTGTTGAGAAAAGCCGCCGAACGGTCCATCGAGAGCCTCTGGACAACAATCGGGCGACTACTCCAACTCTTCACCCCAGACGAATGCCGCA
ACTATTTCGCAGCCGCAGGCTATGATGCAGCGTGATCGGATTCCGCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
947 bp | 315 aa | 89 | 1035 | + | No |
Chemistry : DDE
ORF sequence :
MSKALSMDLRVRVLAAVGQGLSHRAAAERFGVSAASISRWRSREREQGDARPKALGGDRRSGRIDAHMSVIVEALGPEKDATLEEVRRSLADRGLFFGFG
TIQRFFKRHNITRKKKSAHASEQNRPDILKRRQDWFDGQLDLDPERLVFIDETWASTNMARRYGRCRIGERLRIRVPHGHWKTTTFIGALTVRGFIAPFV
IDRPINRLSFETYVEKVLLPELRPDDVVVMDNLSSHKGPRVREMIESVGAKLEYLPPYSPDFNPIENAFSKLKALLRKAAERSIESLWTTIGRLLQLFTP
DECRNYFAAAGYDAA
TIQRFFKRHNITRKKKSAHASEQNRPDILKRRQDWFDGQLDLDPERLVFIDETWASTNMARRYGRCRIGERLRIRVPHGHWKTTTFIGALTVRGFIAPFV
IDRPINRLSFETYVEKVLLPELRPDDVVVMDNLSSHKGPRVREMIESVGAKLEYLPPYSPDFNPIENAFSKLKALLRKAAERSIESLWTTIGRLLQLFTP
DECRNYFAAAGYDAA
Blast result :
Comments
ISRm10 is an iso(99% similar) with ISRml0-2 (accession number : AJ242574). ISRm10 is 66% aa similar with ISRm10-1 and 58% with ISRm2011-2.
The protein is a fusion protein : join (89-434;434-1035), there is a ribosomal slippage.
The protein is a fusion protein : join (89-434;434-1035), there is a ribosomal slippage.
References
1] Biondi,E., Fancelli,S. and Bazzicalupo,M.(1999) Direct Submission GenBank.