ISRm10

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRm10-2
Accession numberTranspositionOriginHost
AF143444 ND Sinorhizobium meliloti
Sinorhizobium meliloti BE31CC plasmid pSym
DNA section
IS Length : 1047 bp

Ends


IR Length : 13/14

IRL : AGCGGAACCCGATCTGATTGAATCGTTTTGGCTATGCAAATCAGTTTTGG
IRR : AGCGGAATCCGATCACGCTGCATCATAGCCTGCGGCTGCGAAATAGTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCTAGNNNNNNNNNN4

DNA sequence

AGCGGAACCCGATCTGATTGAATCGTTTTGGCTATGCAAATCAGTTTTGGTCTGATTCATAGACGTCCGCCGTGTGGAGGCGGCGGACATGTCGAAGGCT
TTATCGATGGATTTGCGGGTCCGGGTTCTGGCGGCGGTCGGCCAGGGCCTGTCGCACCGAGCTGCAGCGGAACGTTTTGGTGTGAGCGCTGCCAGTATCA
GCCGCTGGCGCAGTCGTGAGCGTGAACAGGGCGACGCCCGGCCCAAGGCGCTTGGCGGCGATCGTCGCTCGGGTCGGATCGATGCACATATGAGTGTTAT
CGTCGAAGCCTTGGGCCCGGAGAAGGACGCTACCTTGGAAGAGGTACGCCGCAGTCTGGCGGATCGGGGTCTCTTCTTCGGCTTCGGGACGATCCAGCGT
TTCTTCAAGCGGCACAACATCACGCGCAAAAAAAGAGTGCGCATGCCTCGGAGCAAAACCGGCCTGACATCCTGAAGCGGCGGCAAGACTGGTTCGACGG
CCAACTTGACCTTGATCCGGAACGTCTCGTTTTTATCGATGAGACCTGGGCTTCCACCAACATGGCGCGCCGCTACGGTCGATGCCGCATAGGCGAACGC
TTGCGGATCAGAGTCCCTCATGGTCACTGGAAAACGACAACCTTCATCGGCGCTCTGACGGTGCGCGGCTTTATCGCCCCCTTTGTCATCGACAGGCCCA
TTAACCGCCTTTCGTTCGAGACTTACGTCGAGAAGGTGCTGCTGCCCGAGCTGCGCCCCGATGACGTGGTCGTTATGGACAATCTCTCCAGCCACAAAGG
GCCAAGGGTTCGCGAAATGATCGAAAGCGTTGGTGCGAAGCTAGAGTACCTCCCACCGTACAGCCCCGATTTCAACCCGATCGAAAACGCATTCTCAAAG
CTCAAAGCCCTGTTGAGAAAAGCCGCCGAACGGTCCATCGAGAGCCTCTGGACAACAATCGGGCGACTACTCCAACTCTTCACCCCAGACGAATGCCGCA
ACTATTTCGCAGCCGCAGGCTATGATGCAGCGTGATCGGATTCCGCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
947 bp315 aa891035+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKALSMDLRVRVLAAVGQGLSHRAAAERFGVSAASISRWRSREREQGDARPKALGGDRRSGRIDAHMSVIVEALGPEKDATLEEVRRSLADRGLFFGFG
TIQRFFKRHNITRKKKSAHASEQNRPDILKRRQDWFDGQLDLDPERLVFIDETWASTNMARRYGRCRIGERLRIRVPHGHWKTTTFIGALTVRGFIAPFV
IDRPINRLSFETYVEKVLLPELRPDDVVVMDNLSSHKGPRVREMIESVGAKLEYLPPYSPDFNPIENAFSKLKALLRKAAERSIESLWTTIGRLLQLFTP
DECRNYFAAAGYDAA

 

Blast result :
Comments
ISRm10 is an iso(99% similar) with ISRml0-2 (accession number : AJ242574). ISRm10 is 66% aa similar with ISRm10-1 and 58% with ISRm2011-2.
The protein is a fusion protein : join (89-434;434-1035), there is a ribosomal slippage.
References
1] Biondi,E., Fancelli,S. and Bazzicalupo,M.(1999) Direct Submission GenBank.