ISRle39d
- Family IS6
- Group
Isoform ISRle39ASynonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AJ005069 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum VF39SM |
DNA section
IS Length : 890 bp
Ends
IR Length : 19/23
IRL : CGGGCGTGTCGCAAAGTTTTCTGTTAACGCGGATTTGAGATTTGGATGTG
IRR : CGGGGCTGTCGCAAACATTTCTGCGGCTCGCAATTATCCCATGAACGGCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
CGGGCGTGTCGCAAAGTTTTCTGTTAACGCGGATTTGAGATTTGGATGTGAAACGGCGCTCCGATTTGTTGGACGCGGTTTCATGATTCTGAATGCGATT
GCCGAAAAACTTAAACGCCAGTCGAATGACGATTTCAAAGGCCGGCAATTTGAAGCGTGGCTGATCATTCAGGCGGTTTCCTGGTATTTGCGCTATCCGT
TGAGCTATCGCGATCTCGAGGAAATGTTCAAGGAACGCGGCTTCGAGGTGGATCACAGCAGCGTCAATCGTTGGGTGTTGGCCTATGCGCCGATGATTGA
GAAGCGGTTGCGCCAGTTCCGGAGACCGCATTGTGGTCGATCCGGGTCGATGAAACATACGTGAAAATTCGGGGTCAATGGCGCTATCTGTACCGGGCTA
TCGATAAACACGGCAATCCGGTGGATTTCCTGCTCACCGCAAAGCGTGACCTCGACGCTGCCAAGCGTTTCTTTCGCAAGATGCTGAAGGATGAGCCTTT
GCTTTCACCCGGCAAAATCGGCACAGATGGTGCCAATACCTTTCCTTCAACGATCAAAACCTCGGTCGAAGAGGGGCTGCTCCATCCTGATCCCGTGCAT
TATGTCACCAAGCACCTGCAGCAAGGCATTGAAAGCGACCATTTTCGGGTGAAAAAGAACATGCCGAAAATCGGTGGGTTTCGATCATTCAATTCAGCCC
GGCGAACGATCGCAGGTTTCGAGGCGATACTGTGGTTGAGGAAGGGCTTAGGCTTTTCTGGCGGCTGGACCGTCAACGATCAGAATGATCTGCTTGCGCG
CCTCTTCGGACTTCAAAAAGTTAACAAAGCATGAAAATGACGCCGTTCATGGGATAATTGCGAGCCGCAGAAATGTTTGCGACAGCCCCG
GCCGAAAAACTTAAACGCCAGTCGAATGACGATTTCAAAGGCCGGCAATTTGAAGCGTGGCTGATCATTCAGGCGGTTTCCTGGTATTTGCGCTATCCGT
TGAGCTATCGCGATCTCGAGGAAATGTTCAAGGAACGCGGCTTCGAGGTGGATCACAGCAGCGTCAATCGTTGGGTGTTGGCCTATGCGCCGATGATTGA
GAAGCGGTTGCGCCAGTTCCGGAGACCGCATTGTGGTCGATCCGGGTCGATGAAACATACGTGAAAATTCGGGGTCAATGGCGCTATCTGTACCGGGCTA
TCGATAAACACGGCAATCCGGTGGATTTCCTGCTCACCGCAAAGCGTGACCTCGACGCTGCCAAGCGTTTCTTTCGCAAGATGCTGAAGGATGAGCCTTT
GCTTTCACCCGGCAAAATCGGCACAGATGGTGCCAATACCTTTCCTTCAACGATCAAAACCTCGGTCGAAGAGGGGCTGCTCCATCCTGATCCCGTGCAT
TATGTCACCAAGCACCTGCAGCAAGGCATTGAAAGCGACCATTTTCGGGTGAAAAAGAACATGCCGAAAATCGGTGGGTTTCGATCATTCAATTCAGCCC
GGCGAACGATCGCAGGTTTCGAGGCGATACTGTGGTTGAGGAAGGGCTTAGGCTTTTCTGGCGGCTGGACCGTCAACGATCAGAATGATCTGCTTGCGCG
CCTCTTCGGACTTCAAAAAGTTAACAAAGCATGAAAATGACGCCGTTCATGGGATAATTGCGAGCCGCAGAAATGTTTGCGACAGCCCCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 752 bp | 250 aa | 83 | 834 | + | No |
Chemistry : DDE
ORF sequence :
MILNAIAEKLKRQSNDDFKGRQFEAWLIIQAVSWYLRYPLSYRDLEEMFKERGFEVDHSSVNRWVLAYAPMIEKRLRQFRRPHCGSIRVDETYVKIRGQW
RYLYRAIDKHGNPVDFLLTAKRDLDAAKRFFRKMLKDEPLLSPGKIGTDGANTFPSTIKTSVEEGLLHPDPVHYVTKHLQQGIESDHFRVKKNMPKIGGF
RSFNSARRTIAGFEAILWLRKGLGFSGGWTVNDQNDLLARLFGLQKVNKA
RYLYRAIDKHGNPVDFLLTAKRDLDAAKRFFRKMLKDEPLLSPGKIGTDGANTFPSTIKTSVEEGLLHPDPVHYVTKHLQQGIESDHFRVKKNMPKIGGF
RSFNSARRTIAGFEAILWLRKGLGFSGGWTVNDQNDLLARLFGLQKVNKA
Blast result :
Comments
ISRle39d is an isoform of ISRle39a, it is 98% aa similar to ISRle39a and b. There is a frameshift at position 337. This is not the same position as in ISRle39a (sequencing error, inactive element ?).
References
1] Rochepeau,P., Selinger,B.L. and Hynes,M.F. (1998) Direct submission