ISRl2
- Family IS5
- Group IS1031
Isoform Synonym(s) ISRlF7-2
Accession number | Transposition | Origin | Host |
---|---|---|---|
Z37965 | Y | Rhizobium leguminosarum | Sinorhizobium meliloti Rhizobium tropici Rhizobium leguminosarum biovar viciae MSDJ4184 Rhizobium etli Rhizobium galegae Sinorhizobium fredii |
DNA section
IS Length : 932 bp
Ends
IR Length : 14/17
IRL : GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCTGTT
IRR : GAGCCTGACTCGAAAAGGTTTCAACGATATCCGTACCTTGCCAAGCGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TTA | NNNNNNNNNN | 3 |
DNA sequence
GAGCCTGACCGAAAAAGAGTTGAGTGAAATCAGCCAGTTGTGATTCTGTTTGTTTGCTTAGGACGAACGGAGACCACAATGGGCTGGACTGATTTCACCC
GTCGGCAATATGCCCGACGCACAGTGCGGTATGCAAGCGATCTGACGGACCGGGAGTGGGGATTGATCTCGCCTTGCCTGCCTGGACCGAGGCGGTTGGG
CAGGCCGCGCAGTACCGATCTTCGCGAGGTGGTGAATGCGTTGCTTTACATCGCCACGACGGGGTGCCAGTGGCGGATGATGCCCAGAGATTTCCCACCT
TTTACAACTGTGCAGTCCTATTTCTATGAATGGCGAGCGACAGGGTTATGGGGTCGGATCAACCATCATCTTGTGATGGAGGCGCGTGACTTGGAAGGTC
GGGAAGCCTCGCCGTCTGCGGGCGTGATCGACAGTCAAAGCGTGAAAACCACGGAAAGCGGCGGAATTTCGGGCTATGACGCGGGCAAGAAGATAAAGGG
ACGCAAGCGTCATATCGTCGTCGACACGCTCGGACTGATGGTCGGCCTCATGGTTCACAGCGCCGATATTCAGGATCGCGACGGCGCGCCTGCCGTTCTC
AAAACCATTCTCAAGCGCTGGCCGTGGCTGAGACATATCTTCGCCGATGGTGGTTATGCCGGATCGAAGCTGAGGGGCGCACTGCAAAAGATCGCTGCGT
TCACTCTCCAGATCGTCAAGCGGACCGACAAGGCCAAGGGCTTCGAGGTTCTGCCGCGTCGCTGGGTAGTGGAGCGCACCTTCGCATGGCTTGGCAGATG
CCGACGATTGGCGAAGGATTGGGAAAAGTCCGTCGCCTCAGCCGAGGCCTGGGTCACTATCGCCCACATCCGGGTCCTGACACGACGCTTGGCAAGGTAC
GGATATCGTTGAAACCTTTTCGAGTCAGGCTC
GTCGGCAATATGCCCGACGCACAGTGCGGTATGCAAGCGATCTGACGGACCGGGAGTGGGGATTGATCTCGCCTTGCCTGCCTGGACCGAGGCGGTTGGG
CAGGCCGCGCAGTACCGATCTTCGCGAGGTGGTGAATGCGTTGCTTTACATCGCCACGACGGGGTGCCAGTGGCGGATGATGCCCAGAGATTTCCCACCT
TTTACAACTGTGCAGTCCTATTTCTATGAATGGCGAGCGACAGGGTTATGGGGTCGGATCAACCATCATCTTGTGATGGAGGCGCGTGACTTGGAAGGTC
GGGAAGCCTCGCCGTCTGCGGGCGTGATCGACAGTCAAAGCGTGAAAACCACGGAAAGCGGCGGAATTTCGGGCTATGACGCGGGCAAGAAGATAAAGGG
ACGCAAGCGTCATATCGTCGTCGACACGCTCGGACTGATGGTCGGCCTCATGGTTCACAGCGCCGATATTCAGGATCGCGACGGCGCGCCTGCCGTTCTC
AAAACCATTCTCAAGCGCTGGCCGTGGCTGAGACATATCTTCGCCGATGGTGGTTATGCCGGATCGAAGCTGAGGGGCGCACTGCAAAAGATCGCTGCGT
TCACTCTCCAGATCGTCAAGCGGACCGACAAGGCCAAGGGCTTCGAGGTTCTGCCGCGTCGCTGGGTAGTGGAGCGCACCTTCGCATGGCTTGGCAGATG
CCGACGATTGGCGAAGGATTGGGAAAAGTCCGTCGCCTCAGCCGAGGCCTGGGTCACTATCGCCCACATCCGGGTCCTGACACGACGCTTGGCAAGGTAC
GGATATCGTTGAAACCTTTTCGAGTCAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
873 bp | 290 aa | 40 | 912 | + | No |
Chemistry : DDE
ORF sequence :
MILFVCLGRTETTMGWTDFTRRQYARRTVRYASDLTDREWGLISPCLPGPRRLGRPRSTDLREVVNALLYIATTGCQWRMMPRDFPPFTTVQSYFYEWRA
TGLWGRINHHLVMEARDLEGREASPSAGVIDSQSVKTTESGGISGYDAGKKIKGRKRHIVVDTLGLMVGLMVHSADIQDRDGAPAVLKTILKRWPWLRHI
FADGGYAGSKLRGALQKIAAFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSVASAEAWVTIAHIRVLTRRLARYGYR
TGLWGRINHHLVMEARDLEGREASPSAGVIDSQSVKTTESGGISGYDAGKKIKGRKRHIVVDTLGLMVGLMVHSADIQDRDGAPAVLKTILKRWPWLRHI
FADGGYAGSKLRGALQKIAAFTLQIVKRTDKAKGFEVLPRRWVVERTFAWLGRCRRLAKDWEKSVASAEAWVTIAHIRVLTRRLARYGYR
Blast result :
Comments
ISRl2 putative transposase is 80 % identical to that of ISRm4. ISRl2 is nearly identical to ISRlF7-2 described in Simon et al. (1991).
References