ISRH1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF023675 | ND | Rhizobium hedysari | Rhizobium hedysari IS123 |
DNA section
IS Length : 811 bp
Ends
IR Length : 16/17
IRL : CGGTGATGTCACGTTGTCAGCGGCTTAACGGTTGTCGGATAATGGGTTGG
IRR : CGGCGATGTCACGTTGTTTGATCAAGGTCGGAACAAGGCGCTTATGTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CGGTGATGTCACGTTGTCAGCGGCTTAACGGTTGTCGGATAATGGGTTGGGATGAACAATCCGCCCGTAACCTACCAAGAACCACCGCTTTCCCACCCAA
GATTATCGCGCGTGCGGTCTGGCTGTATTTTCGGTTCCCTTTGAGCCTGAGGATGGTCGAGGAGATGCTGCTGGAGCGCGGTATCGTCGTCTCCCATGAG
ACGATCCGGAGATGGGGTCCCAAATTCGGAGCGGCTTATGCCAGGCAGTTGTGCAGAAAGAGGCCTTCGCGAAAGGATATCTGGCATCTGGACGAGGTGG
TGATTTCCATCGGCGGCCGCAAACATTGGCTCTGGCGTGCCGTTGACCAAGACGGTTACGTTCTCGACGAGATCGTTCAAGCCCGCCGCGATACCCAAGC
CGCCAGGCGATTGCTGGTCAGGCTGCTGAAGAAGCAAGGCCTGACGCCGAAGCGGATCGTCACCGACAAATTGCGCTCATATGGTGCTGCAAGACGGGAG
GTGATGCCCGCCGTCGAACATCGATCGCACAAGGGCCTGAACAATCGAGCCGAGAATTCTCACGTGCCGCTTCGAAAACGGGAGCGGATGATGCAGAGAT
TTCGATCCGTCGGCGGCTTGCAACGGTTCATATCGATCTTTTCGGCACTCCGAAATCTCTTCGTCCCCCCGCACCAGAAAAACTCAGCCCTCGCCATCCA
CATCCATCGGATCCGCTCAATGGCGCAGTGGAAAGCCGTGACCGGCGCAACCGCCTGACGTCTCACATAAGCGCCTTGTTCCGACCTTGATCAAACAACG
TGACATCGCCG
GATTATCGCGCGTGCGGTCTGGCTGTATTTTCGGTTCCCTTTGAGCCTGAGGATGGTCGAGGAGATGCTGCTGGAGCGCGGTATCGTCGTCTCCCATGAG
ACGATCCGGAGATGGGGTCCCAAATTCGGAGCGGCTTATGCCAGGCAGTTGTGCAGAAAGAGGCCTTCGCGAAAGGATATCTGGCATCTGGACGAGGTGG
TGATTTCCATCGGCGGCCGCAAACATTGGCTCTGGCGTGCCGTTGACCAAGACGGTTACGTTCTCGACGAGATCGTTCAAGCCCGCCGCGATACCCAAGC
CGCCAGGCGATTGCTGGTCAGGCTGCTGAAGAAGCAAGGCCTGACGCCGAAGCGGATCGTCACCGACAAATTGCGCTCATATGGTGCTGCAAGACGGGAG
GTGATGCCCGCCGTCGAACATCGATCGCACAAGGGCCTGAACAATCGAGCCGAGAATTCTCACGTGCCGCTTCGAAAACGGGAGCGGATGATGCAGAGAT
TTCGATCCGTCGGCGGCTTGCAACGGTTCATATCGATCTTTTCGGCACTCCGAAATCTCTTCGTCCCCCCGCACCAGAAAAACTCAGCCCTCGCCATCCA
CATCCATCGGATCCGCTCAATGGCGCAGTGGAAAGCCGTGACCGGCGCAACCGCCTGACGTCTCACATAAGCGCCTTGTTCCGACCTTGATCAAACAACG
TGACATCGCCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 5 | 757 | + | No |
Chemistry : DDE
ORF sequence :
MSRCQRLNGCRIMGWDEQSARNLPRTTAFPPKIIARAVWLYFRFPLSLRMVEEMLLERGIVVSHETIRRWGPKFGAAYARQLCRKRPSRKDIWHLDEVVI
SIGGRKHWLWRAVDQDGYVLDEIVQARRDTQAARRLLVRLLKKQGLTPKRIVTDKLRSYGAARREVMPAVEHRSHKGLNNRAENSHVPLRKRERMMQRFR
SVGGLQRFISIFSALRNLFVPPHQKNSALAIHIHRIRSMAQWKAVTGATA
SIGGRKHWLWRAVDQDGYVLDEIVQARRDTQAARRLLVRLLKKQGLTPKRIVTDKLRSYGAARREVMPAVEHRSHKGLNNRAENSHVPLRKRERMMQRFR
SVGGLQRFISIFSALRNLFVPPHQKNSALAIHIHRIRSMAQWKAVTGATA
Blast result :
Comments
The six copies in strain IS123 appear clustered specifically within the pSym nod region.
The ends of ISRh1 were not typical of IS6 family sequences, ATG of reading frame is within IRL. An alternative initiation codon is located at coordinate 40, downstream for the IR.
ISRh1 was 55% aa similar with ISS1.
The ends of ISRh1 were not typical of IS6 family sequences, ATG of reading frame is within IRL. An alternative initiation codon is located at coordinate 40, downstream for the IR.
ISRh1 was 55% aa similar with ISS1.
References
1] Meneghetti,F., Alberghini,S., Tola,E., Giacomini,A., Ollero,F.J., Squartini,A. and Nuti,M.P.(1996) Plant Soil 186, 113-120