ISRf1
- Family Tn3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y08939 | ND | Sinorhizobium fredii | Sinorhizobium fredii HH103 |
DNA section
IS Length : 1002 bp
Ends
IR Length : 29/33
IRL : GGGGTCGGTTCCGGTTCGGGGCGAAATGACACCGTAAGGACAAACTGCTC
IRR : GGGGTCAGTTCAGGTAGGGGGCGAAATGACACCTTAGCATCTATAACGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGGTCGGTTCCGGTTCGGGGCGAAATGACACCGTAAGGACAAACTGCTCTGTCCCAATTGAACCATTGTAGATTTTGATGGCAGGATGCCCTGATTTGC
AGGGGCTTATTGGTGTCTAAAACAGACTACCCTTCTACTGGGACAACACAGCCGCATCCTTTTTGCGCAAGCATCTGCTTAAACAGGGCTATGGCGTGAA
AGAACTATCTTTTACCGTCCTGCTACTCACGTCTTTCCTTCCATCGGATGCGATATGTGGTTATGTCTTGGCCAAGGGCATGAGGGGTAAACGAATGTTT
GGTTTTGGAAGAAAGTTTGCTCCAGCGGATGTGGGGGCGACTGTACGCAGAAAACGCTACTTTTATATAGCGAGCCAGTGATGCTTGGTTTGATCAAACT
TGGATCGATTGACTTTTCCAACGACGATCGCGGCAGTAAGGTATTCGGATACTCACTGCTACTGAATACCGGTGCGACAACTCATTCCCTTGGTTTTGCA
TCATCTGAGGACGATCCGTTTCGATCAAGTCGATTTCCTGAAAGATCGCAAGCCTTTTTTGATAGCTTTGCTGAGGCTTATTCTAAAAAATTGGATATTC
CCATTCATTACGATTTTGACCACTGCGTTCAATTCGTCCTGAACGAAATCGCGACAAACGACAGTTATGCTGACACTAAAACATTCTACGGAAATGGGGC
TCGACAGTCACTGTATGCTGAGGTCGTTCGCTTCCTGGCATCCAAAACAGCTCCGGACCGTTTTAGCGCTTTGCAGCCATTCTCTCAGGTAGAGGAAGAA
AAATGGCATCACGTGCTTGAGGCGATAGAAGGGCTGGACCGATCATATCGGTGGTCAATCGAATGCTTCGACTTTGGTAAAATGAAACGAACATGAAGTT
TTTTCAGGGGCAGTAATCTGGGAGACATGTTTCCCACGATCGGCTTTGAGCCCCCGTTATAGATGCTAAGGTGTCATTTCGCCCCCTACCTGAACTGACC
CC
AGGGGCTTATTGGTGTCTAAAACAGACTACCCTTCTACTGGGACAACACAGCCGCATCCTTTTTGCGCAAGCATCTGCTTAAACAGGGCTATGGCGTGAA
AGAACTATCTTTTACCGTCCTGCTACTCACGTCTTTCCTTCCATCGGATGCGATATGTGGTTATGTCTTGGCCAAGGGCATGAGGGGTAAACGAATGTTT
GGTTTTGGAAGAAAGTTTGCTCCAGCGGATGTGGGGGCGACTGTACGCAGAAAACGCTACTTTTATATAGCGAGCCAGTGATGCTTGGTTTGATCAAACT
TGGATCGATTGACTTTTCCAACGACGATCGCGGCAGTAAGGTATTCGGATACTCACTGCTACTGAATACCGGTGCGACAACTCATTCCCTTGGTTTTGCA
TCATCTGAGGACGATCCGTTTCGATCAAGTCGATTTCCTGAAAGATCGCAAGCCTTTTTTGATAGCTTTGCTGAGGCTTATTCTAAAAAATTGGATATTC
CCATTCATTACGATTTTGACCACTGCGTTCAATTCGTCCTGAACGAAATCGCGACAAACGACAGTTATGCTGACACTAAAACATTCTACGGAAATGGGGC
TCGACAGTCACTGTATGCTGAGGTCGTTCGCTTCCTGGCATCCAAAACAGCTCCGGACCGTTTTAGCGCTTTGCAGCCATTCTCTCAGGTAGAGGAAGAA
AAATGGCATCACGTGCTTGAGGCGATAGAAGGGCTGGACCGATCATATCGGTGGTCAATCGAATGCTTCGACTTTGGTAAAATGAAACGAACATGAAGTT
TTTTCAGGGGCAGTAATCTGGGAGACATGTTTCCCACGATCGGCTTTGAGCCCCCGTTATAGATGCTAAGGTGTCATTTCGCCCCCTACCTGAACTGACC
CC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
516 bp | 170 aa | 381 | 896 | + | No |
Chemistry : DDE
ORF sequence :
MLGLIKLGSIDFSNDDRGSKVFGYSLLLNTGATTHSLGFASSEDDPFRSSRFPERSQAFFDSFAEAYSKKLDIPIHYDFDHCVQFVLNEIATNDSYADTK
TFYGNGARQSLYAEVVRFLASKTAPDRFSALQPFSQVEEEKWHHVLEAIEGLDRSYRWSIECFDFGKMKRT
TFYGNGARQSLYAEVVRFLASKTAPDRFSALQPFSQVEEEKWHHVLEAIEGLDRSYRWSIECFDFGKMKRT
Blast result :
Comments
Only present in Sinorhizobium fredii HH103, not in other closely related strains.
Tn3 remnant.
Tn3 remnant.
References
1] Vinardell,J.M., Ollero,F.J., Krishnan,H.B., del Rosario Espuny,M., Villalobo,E., Pueppke,S.G. and Ruiz-Sainz,J.E. (1997) Gene 204 (1-2), 63-69.