ISR1

  • Family IS3
  • Group IS407
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
X06616 Y Rhizobium lupini
Rhizobium lupini class IV plasmid pRP4
DNA section
IS Length : 1259 bp

Ends


IR Length : 12/13

IRL : TGACGTGACCCCCTGAAACTCCTCCAGGAATAGCTAGAGTCCGCCCAACG
IRR : TGACGTGACCCCCGTTTCTCATCCAGCCATAACGAGAGTCCTAGGTTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AGCTCAGTATTGCCCGCTCCACGG4

DNA sequence

TGACGTGACCCCCTGAAACTCCTCCAGGAATAGCTAGAGTCCGCCCAACGAAGGACGGACAGAATGAAGCGATCGAGGTTCACGGAAGAGCAGATCATCG
GGATCCTGCGGGAGCAGGAGGCCGGTGTAGCGACGGCGGAGGTGTGCCGACGCCACGGGGTCAGCTCGGCGACCTTTTACAAATGGAAGGCCAAGTTTGG
CGGGCTCGACGTGTCGGAGGCTCGGCGGCTCAAGGCGCTCGAGGATGAGAACGCCCGGCTGAAGCGGATGCTGGCGGACGCGATGCTGGACAACGTGGCC
CTGAAGGACCTGCTGGGAAAAAAGTGGTGACGCCCGCCGGCTATCGCGAGGCGGCTGGCCATCTGCAGGCCGCCTACGAGATGAGCGAAAGGCGGGCGTG
CCGTGTTCTGGGCGTCGATCGGACGAGCGTGCGCTATCAGGCGACGCGCCCGGACGACGCCTCTGCGCGACCGGCTGAAGGCCCTGGCCAGGAACGTCGA
CGGTTCGGCTATCGTCGCCTGCACGTGCTGCTGCGGCGCGAGGGCCATGCGGTCAACAGGAAACGGGTCCAGCGGATCTATCGCGACGAGCAACTGACGG
TGCGCCGGCGCGCGCCGCAAGCGAGCGATGGGCACGCGGCGACCGTGACCTGCCGCTGGCGCCAACCAGCGCTGGTCGCTGACTTCGTCGCAGACCAGCT
GACGGACGGGCGGCGCTTCCGCATCCTGACGGTGATCGATAACTGTACGCGCGAGTGCTTGGCGCTGGTGGCCGACACCTCGCTGTCGGGCGCGCGGGTC
GTGCGGGAGTTGGACGCCGTCATCCGGCAGCGAGGGCGGCCCGACACCATCGTCAGCGACAACGGCACGGAGTACACCTCGAACGCGGTCCTGGCCTGGG
CGACGACACCGGCGTTCGGCTGGCACTACATCGCGCCGGGCAAGCCCCAGCAGAACGGCTTCAACGAAAGCTTCAACGGGCGGCTGCGTGACGAGCTGCT
GAACGAGACGCTGTTCCGCTCGCTGCCGCCGCTCGCGCCGTGCGGAGGCGTGGCGACGCGATTACAACGAGCAGCGTCCGCACTCGAAGCTCGGGTGGCT
GACGCCGCAGGCTTATGCAGAAGCGCTCACCGCACACAACGGCCGGCCTGCTGCGTGGTTGATGGCTGCGCAGACCGGCCTCTTGCCAACCCAGCCGATC
ACAGCTCAGATCAACCTAGGACTCTCGTTATGGCTGGATGAGAAACGGGGGTCACGTCA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
267 bp88 aa64330+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MKRSRFTEEQIIGILREQEAGVATAEVCRRHGVSSATFYKWKAKFGGLDVSEARRLKALEDENARLKRMLADAMLDNVALKDLLGKKW

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
993 bp330 aa2491241+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

ERPAEADAGGRDAGQRGPEGPAGKKVVTPAGYREAAGHLQAAYEMSERRACRVLGVDRTSVRYQATRPDDASARPAEGPGQERRRFGYRRLHVLLRREGH
AVNRKRVQRIYRDEQLTVRRRAPQASDGHAATVTCRWRQPALVADFVADQLTDGRRFRILTVIDNCTRECLALVADTSLSGARVVRELDAVIRQRGRPDT
IVSDNGTEYTSNAVLAWATTPAFGWHYIAPGKPQQNGFNESFNGRLRDELLNETLFRSLPPLAPCGGVATRLQRAASALEARVADAAGLCRSAHRTQRPA
CCVVDGCADRPLANPADHSSDQPRTLVMAG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1178 bp392 aa641241+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRSRFTEEQIIGILREQEAGVATAEVCRRHGVSSATFYKWKAKFGGLDVSEARRLKALEDENARLKRMLADAMLDNVALKDLLGKKVVTPAGYREAAGH
LQAAYEMSERRACRVLGVDRTSVRYQATRPDDASARPAEGPGQERRRFGYRRLHVLLRREGHAVNRKRVQRIYRDEQLTVRRRAPQASDGHAATVTCRWR
QPALVADFVADQLTDGRRFRILTVIDNCTRECLALVADTSLSGARVVRELDAVIRQRGRPDTIVSDNGTEYTSNAVLAWATTPAFGWHYIAPGKPQQNGF
NESFNGRLRDELLNETLFRSLPPLAPCGGVATRLQRAASALEARVADAAGLCRSAHRTQRPACCVVDGCADRPLANPADHSSDQPRTLVMAG

 

Blast result :
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References