ISPsy3

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB063176 ND Pseudomonas syringae
Pseudomonas syringae pv. eriobotryae
DNA section
IS Length : 1507 bp

Ends


oriIS : GAACAGGGCAGCCTGCGGCTGCAAATCGCCCGTTCTTGCGATCGCGTAGCAGCAGAAACATGGATTTGAGCTTTGTCATGAGGCCCATTATTGATCATCA II struct. : No
terIS : AAAAAGCTTTTTGCCGACATCGACGCCACGTTGGCATCACGCCGAGGGGACCTTTTTCGGCGGATTACCTTGTATAGGAATTATTGAAATTCCTATACAT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

GAACAGGGCAGCCTGCGGCTGCAAATCGCCCGTTCTTGCGATCGCGTAGCAGCAGAAACATGGATTTGAGCTTTGTCATGAGGCCCATTATTGATCATCA
TGAAGCCTGCTTACCCACCGCTGCTTCAGATGAGTCCAGCCTACACACCTCGACCGCTCAAAAACCTCTTCACCGCCAATCAATGCTGGGCACACCTCCT
CGAGGAGGGCGGCTTGCGCGACATCGAAGTCGAGTCCGTCAGCAAAATGCTGGCCTGCGGCACCTCGATCCTGGGCGTCAAACACTACACCTGCGGAAAC
CACAGCTGCCCGCACGTCAAATACCTGTGCAACACCTGCAGTTGCCGCGCCTGTCCATCCTGCGGCAAAAAAGCTACCGATCAGTGGATCGCCAATCAAC
AGCACCGCTTACCCGAGTGTACCTGGCAACACCTGGTGTTCACATTGCCTGACACCCTGTGGCCGCTGTTCTTTCATAACCGTCACGGGCTCGATGCCTT
GTGTCGCCTGGCCGTCGACAACCTGCTCTATGCGGGCCGACGCCGGGGCGTGGAGGTGGGTGTTTTCTGCGCCATCCACACCTACGGCCGGCGACTTAAC
TGGCACCCACACATCCATGTCTCGGTCACCTTGGGTGGGATCGATGACGCAGGTGTCTGGAAAGATCTGTCGGTTCATCCATCAGCCTTGCGTCGGCGCT
GGATGTGGAATGTACGCCAGTACCTGCTCAGTCAGTGGGAGCACACCACCGTCCCACCTGAAAACGCTCATCTGCAGAGCGAAAATGACTGGCGTCACCT
TGTGCTCAACGCCGGTGGTCAGCACTGGCACATCCACTTGTCGAAGAAGACGAAAAACGGCAAAAAGACCGTCAATTACCTGGGCCGCTACCTGAAAAAA
CCGCCCATCTCGGGCAGCCGATTGGCCCATTACACCAACAGCGCAACCTTGAGTTTTACCTACCTGGATCACCGCACCAAGACCTATCAGCAGGAAACGC
TGAGCCAGACCGACATGCTGCGCCGGGTGGTGCAGCACATCCCGGAGAAGCACTTTCGGATGATCCGGTATTTTGGATTTCTGGCCAACCGCGTCTGTGG
CAGACAGCTACCCCGGGTGTATGAGGCGCTACGCATGGAAAGGCGTGGCAAAGCGCAAAAACTGTATTTTGCGCAGATGAGCAAAGCGTTCTTGCATCGG
GATCCGTTCAGCTGCGTGCTGTGCGGAGCACGGATGGTTTATACCGCAGCCATCGCCGGCCTGACCGTGCAGGGCTTGATCAACAACGCTCAAAGCATCG
CGCAATTGAGGTACGTGCCGGCCTGATACGGGAGAGGTGCGTCCAAAATCTGGAAAAGGTACAGAAAAGTCGCTTTCAATCCATTTTTCGGCGTGGGTGA
TGGGTGAAAAAAGCTTTTTGCCGACATCGACGCCACGTTGGCATCACGCCGAGGGGACCTTTTTCGGCGGATTACCTTGTATAGGAATTATTGAAATTCC
TATACAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa1001326+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MKPAYPPLLQMSPAYTPRPLKNLFTANQCWAHLLEEGGLRDIEVESVSKMLACGTSILGVKHYTCGNHSCPHVKYLCNTCSCRACPSCGKKATDQWIANQ
QHRLPECTWQHLVFTLPDTLWPLFFHNRHGLDALCRLAVDNLLYAGRRRGVEVGVFCAIHTYGRRLNWHPHIHVSVTLGGIDDAGVWKDLSVHPSALRRR
WMWNVRQYLLSQWEHTTVPPENAHLQSENDWRHLVLNAGGQHWHIHLSKKTKNGKKTVNYLGRYLKKPPISGSRLAHYTNSATLSFTYLDHRTKTYQQET
LSQTDMLRRVVQHIPEKHFRMIRYFGFLANRVCGRQLPRVYEALRMERRGKAQKLYFAQMSKAFLHRDPFSCVLCGARMVYTAAIAGLTVQGLINNAQSI
AQLRYVPA

 

Blast result :
Comments
ISPsy3 is 87% aa similar to IS801.
References
1] Kamiunten,H. (2001) Direct submission GenBank