ISPsy3
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB063176 | ND | Pseudomonas syringae | Pseudomonas syringae pv. eriobotryae |
DNA section
IS Length : 1507 bp
Ends
oriIS : GAACAGGGCAGCCTGCGGCTGCAAATCGCCCGTTCTTGCGATCGCGTAGCAGCAGAAACATGGATTTGAGCTTTGTCATGAGGCCCATTATTGATCATCA II struct. : No
terIS : AAAAAGCTTTTTGCCGACATCGACGCCACGTTGGCATCACGCCGAGGGGACCTTTTTCGGCGGATTACCTTGTATAGGAATTATTGAAATTCCTATACAT II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|
DNA sequence
GAACAGGGCAGCCTGCGGCTGCAAATCGCCCGTTCTTGCGATCGCGTAGCAGCAGAAACATGGATTTGAGCTTTGTCATGAGGCCCATTATTGATCATCA
TGAAGCCTGCTTACCCACCGCTGCTTCAGATGAGTCCAGCCTACACACCTCGACCGCTCAAAAACCTCTTCACCGCCAATCAATGCTGGGCACACCTCCT
CGAGGAGGGCGGCTTGCGCGACATCGAAGTCGAGTCCGTCAGCAAAATGCTGGCCTGCGGCACCTCGATCCTGGGCGTCAAACACTACACCTGCGGAAAC
CACAGCTGCCCGCACGTCAAATACCTGTGCAACACCTGCAGTTGCCGCGCCTGTCCATCCTGCGGCAAAAAAGCTACCGATCAGTGGATCGCCAATCAAC
AGCACCGCTTACCCGAGTGTACCTGGCAACACCTGGTGTTCACATTGCCTGACACCCTGTGGCCGCTGTTCTTTCATAACCGTCACGGGCTCGATGCCTT
GTGTCGCCTGGCCGTCGACAACCTGCTCTATGCGGGCCGACGCCGGGGCGTGGAGGTGGGTGTTTTCTGCGCCATCCACACCTACGGCCGGCGACTTAAC
TGGCACCCACACATCCATGTCTCGGTCACCTTGGGTGGGATCGATGACGCAGGTGTCTGGAAAGATCTGTCGGTTCATCCATCAGCCTTGCGTCGGCGCT
GGATGTGGAATGTACGCCAGTACCTGCTCAGTCAGTGGGAGCACACCACCGTCCCACCTGAAAACGCTCATCTGCAGAGCGAAAATGACTGGCGTCACCT
TGTGCTCAACGCCGGTGGTCAGCACTGGCACATCCACTTGTCGAAGAAGACGAAAAACGGCAAAAAGACCGTCAATTACCTGGGCCGCTACCTGAAAAAA
CCGCCCATCTCGGGCAGCCGATTGGCCCATTACACCAACAGCGCAACCTTGAGTTTTACCTACCTGGATCACCGCACCAAGACCTATCAGCAGGAAACGC
TGAGCCAGACCGACATGCTGCGCCGGGTGGTGCAGCACATCCCGGAGAAGCACTTTCGGATGATCCGGTATTTTGGATTTCTGGCCAACCGCGTCTGTGG
CAGACAGCTACCCCGGGTGTATGAGGCGCTACGCATGGAAAGGCGTGGCAAAGCGCAAAAACTGTATTTTGCGCAGATGAGCAAAGCGTTCTTGCATCGG
GATCCGTTCAGCTGCGTGCTGTGCGGAGCACGGATGGTTTATACCGCAGCCATCGCCGGCCTGACCGTGCAGGGCTTGATCAACAACGCTCAAAGCATCG
CGCAATTGAGGTACGTGCCGGCCTGATACGGGAGAGGTGCGTCCAAAATCTGGAAAAGGTACAGAAAAGTCGCTTTCAATCCATTTTTCGGCGTGGGTGA
TGGGTGAAAAAAGCTTTTTGCCGACATCGACGCCACGTTGGCATCACGCCGAGGGGACCTTTTTCGGCGGATTACCTTGTATAGGAATTATTGAAATTCC
TATACAT
TGAAGCCTGCTTACCCACCGCTGCTTCAGATGAGTCCAGCCTACACACCTCGACCGCTCAAAAACCTCTTCACCGCCAATCAATGCTGGGCACACCTCCT
CGAGGAGGGCGGCTTGCGCGACATCGAAGTCGAGTCCGTCAGCAAAATGCTGGCCTGCGGCACCTCGATCCTGGGCGTCAAACACTACACCTGCGGAAAC
CACAGCTGCCCGCACGTCAAATACCTGTGCAACACCTGCAGTTGCCGCGCCTGTCCATCCTGCGGCAAAAAAGCTACCGATCAGTGGATCGCCAATCAAC
AGCACCGCTTACCCGAGTGTACCTGGCAACACCTGGTGTTCACATTGCCTGACACCCTGTGGCCGCTGTTCTTTCATAACCGTCACGGGCTCGATGCCTT
GTGTCGCCTGGCCGTCGACAACCTGCTCTATGCGGGCCGACGCCGGGGCGTGGAGGTGGGTGTTTTCTGCGCCATCCACACCTACGGCCGGCGACTTAAC
TGGCACCCACACATCCATGTCTCGGTCACCTTGGGTGGGATCGATGACGCAGGTGTCTGGAAAGATCTGTCGGTTCATCCATCAGCCTTGCGTCGGCGCT
GGATGTGGAATGTACGCCAGTACCTGCTCAGTCAGTGGGAGCACACCACCGTCCCACCTGAAAACGCTCATCTGCAGAGCGAAAATGACTGGCGTCACCT
TGTGCTCAACGCCGGTGGTCAGCACTGGCACATCCACTTGTCGAAGAAGACGAAAAACGGCAAAAAGACCGTCAATTACCTGGGCCGCTACCTGAAAAAA
CCGCCCATCTCGGGCAGCCGATTGGCCCATTACACCAACAGCGCAACCTTGAGTTTTACCTACCTGGATCACCGCACCAAGACCTATCAGCAGGAAACGC
TGAGCCAGACCGACATGCTGCGCCGGGTGGTGCAGCACATCCCGGAGAAGCACTTTCGGATGATCCGGTATTTTGGATTTCTGGCCAACCGCGTCTGTGG
CAGACAGCTACCCCGGGTGTATGAGGCGCTACGCATGGAAAGGCGTGGCAAAGCGCAAAAACTGTATTTTGCGCAGATGAGCAAAGCGTTCTTGCATCGG
GATCCGTTCAGCTGCGTGCTGTGCGGAGCACGGATGGTTTATACCGCAGCCATCGCCGGCCTGACCGTGCAGGGCTTGATCAACAACGCTCAAAGCATCG
CGCAATTGAGGTACGTGCCGGCCTGATACGGGAGAGGTGCGTCCAAAATCTGGAAAAGGTACAGAAAAGTCGCTTTCAATCCATTTTTCGGCGTGGGTGA
TGGGTGAAAAAAGCTTTTTGCCGACATCGACGCCACGTTGGCATCACGCCGAGGGGACCTTTTTCGGCGGATTACCTTGTATAGGAATTATTGAAATTCC
TATACAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 100 | 1326 | + | No |
Chemistry : Y2
ORF sequence :
MKPAYPPLLQMSPAYTPRPLKNLFTANQCWAHLLEEGGLRDIEVESVSKMLACGTSILGVKHYTCGNHSCPHVKYLCNTCSCRACPSCGKKATDQWIANQ
QHRLPECTWQHLVFTLPDTLWPLFFHNRHGLDALCRLAVDNLLYAGRRRGVEVGVFCAIHTYGRRLNWHPHIHVSVTLGGIDDAGVWKDLSVHPSALRRR
WMWNVRQYLLSQWEHTTVPPENAHLQSENDWRHLVLNAGGQHWHIHLSKKTKNGKKTVNYLGRYLKKPPISGSRLAHYTNSATLSFTYLDHRTKTYQQET
LSQTDMLRRVVQHIPEKHFRMIRYFGFLANRVCGRQLPRVYEALRMERRGKAQKLYFAQMSKAFLHRDPFSCVLCGARMVYTAAIAGLTVQGLINNAQSI
AQLRYVPA
QHRLPECTWQHLVFTLPDTLWPLFFHNRHGLDALCRLAVDNLLYAGRRRGVEVGVFCAIHTYGRRLNWHPHIHVSVTLGGIDDAGVWKDLSVHPSALRRR
WMWNVRQYLLSQWEHTTVPPENAHLQSENDWRHLVLNAGGQHWHIHLSKKTKNGKKTVNYLGRYLKKPPISGSRLAHYTNSATLSFTYLDHRTKTYQQET
LSQTDMLRRVVQHIPEKHFRMIRYFGFLANRVCGRQLPRVYEALRMERRGKAQKLYFAQMSKAFLHRDPFSCVLCGARMVYTAAIAGLTVQGLINNAQSI
AQLRYVPA
Blast result :
Comments
ISPsy3 is 87% aa similar to IS801.
References
1] Kamiunten,H. (2001) Direct submission GenBank