ISPsy1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF169828 | ND | Pseudomonas syringae | Pseudomonas syringae pv. glycinea |
DNA section
IS Length : 2009 bp
Ends
IR Length : 8/10
IRL : GGCCCAATGGACACACAATCAGTGATGAGCAAGTGCAGAAGGTGGTTGAT
IRR : CTTGCCCAATGCTTTTGCTGCGCGAGCAACGGAACCCAGAATCTCGTCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGGTGCATAT | TA | GNNNNNNNNN | 2 |
DNA sequence
GGCCCAATGGACACACAATCAGTGATGAGCAAGTGCAGAAGGTGGTTGATCAGGTTCTGAAGAGCAAACCTGAGAATGCCAGTCATAGGAGTACCCGGCA
AATGAGTCGGGAAACAGGGATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACC
GATCCGCTTTTCGTCGACAAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCC
AGGCGCTGAACCGTACGCAACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGC
TGCTCTGGATGTAGCAACAGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAAGTTGATGCCTCACTA
CCGGCTGATTTGCCGATTCATCTGATTATGGATAACTACGCAACGCACAAGACCGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCCGGTCAGCATCC
ATTTCACTCCCACGTCCCGCTCATGGATGAATCTGGTAGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAA
GGATCTGGAGGCCTCAATCGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTT
GCTCGCGCAGCAAAAGCATTGGGCAAGTAGTTTTATGTATTTCTTGTGAAACACCACACTAGTGTGGTGTTTCACAAGTACCAATGAAAATATAGTCTAT
GCTCATTTGAAACCAACTCGTGAGAGCTGAGCCTTTATATGGGCCGACCAGCGACTGTCATTGTCTTGTCCGAAGCAGAAAAAGCAGAGCTTATACGCGG
GTTAAGCAGCGTAAGGGCGCGCAGGATGCCTGTGTTTCGTGCCCAAATCATCCTGGCGTGCGCAGAGGGAGAATCTGGAAATTTCATTGCCCATCGCCTC
AACGTCAGCAAGGACGTGGTCTCGCGGTGGCGCACGCGCTTTTCAAAATGGGGATTGGTTGGTCTGAACGATGAACATCGTTCGGGTCGCCCGCGCACGA
TCAGCGATGAACAAGTACAGAAGGTGGTTGATCAGGTTCTGAAGGGCAAACCCGAAGACGCCAGCCATTGGAGTACCCGGCAAATGAGTCGGGAAACAGG
AATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACCGATCCGCTTTTCGTCGAC
AAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCCAGGCGCTGAACCGTACGC
AACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGCTGCTCTGGATGTAGCAAC
AGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAGGTTGATGCCTCACTACCGGCTGATGTGCCGATT
CATCTGATTATGGATAACTACGCAACGCACAAGAACGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCGTTACAGCATCCATTTCACTCCCACGTCCG
CCTCATGGATGAATCTGGTGGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAAGGATCTGGAGGCCTCAAT
CGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTTGCTCGCGCAGCAAAAGCA
TTGGGCAAG
AATGAGTCGGGAAACAGGGATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACC
GATCCGCTTTTCGTCGACAAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCC
AGGCGCTGAACCGTACGCAACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGC
TGCTCTGGATGTAGCAACAGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAAGTTGATGCCTCACTA
CCGGCTGATTTGCCGATTCATCTGATTATGGATAACTACGCAACGCACAAGACCGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCCGGTCAGCATCC
ATTTCACTCCCACGTCCCGCTCATGGATGAATCTGGTAGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAA
GGATCTGGAGGCCTCAATCGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTT
GCTCGCGCAGCAAAAGCATTGGGCAAGTAGTTTTATGTATTTCTTGTGAAACACCACACTAGTGTGGTGTTTCACAAGTACCAATGAAAATATAGTCTAT
GCTCATTTGAAACCAACTCGTGAGAGCTGAGCCTTTATATGGGCCGACCAGCGACTGTCATTGTCTTGTCCGAAGCAGAAAAAGCAGAGCTTATACGCGG
GTTAAGCAGCGTAAGGGCGCGCAGGATGCCTGTGTTTCGTGCCCAAATCATCCTGGCGTGCGCAGAGGGAGAATCTGGAAATTTCATTGCCCATCGCCTC
AACGTCAGCAAGGACGTGGTCTCGCGGTGGCGCACGCGCTTTTCAAAATGGGGATTGGTTGGTCTGAACGATGAACATCGTTCGGGTCGCCCGCGCACGA
TCAGCGATGAACAAGTACAGAAGGTGGTTGATCAGGTTCTGAAGGGCAAACCCGAAGACGCCAGCCATTGGAGTACCCGGCAAATGAGTCGGGAAACAGG
AATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACCGATCCGCTTTTCGTCGAC
AAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCCAGGCGCTGAACCGTACGC
AACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGCTGCTCTGGATGTAGCAAC
AGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAGGTTGATGCCTCACTACCGGCTGATGTGCCGATT
CATCTGATTATGGATAACTACGCAACGCACAAGAACGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCGTTACAGCATCCATTTCACTCCCACGTCCG
CCTCATGGATGAATCTGGTGGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAAGGATCTGGAGGCCTCAAT
CGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTTGCTCGCGCAGCAAAAGCA
TTGGGCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1071 bp | 357 aa | 939 | 2009 | + | No |
Chemistry : DDE
ORF sequence :
MGRPATVIVLSEAEKAELIRGLSSVRARRMPVFRAQIILACAEGESGNFIAHRLNVSKDVVSRWRTRFSKWGLVGLNDEHRSGRPRTISDEQVQKVVDQV
LKGKPEDASHWSTRQMSRETGISPASVMRIWHAFGIKPHLEKTFKLSTDPLFVDKVQDIVGLYLNPPDRALVLCVDEKSQIQALNRTQPGLPLAPGNPAT
RTHDYKRHGTTSLFAALDVATGEVIGRLKRQHRSVEFLSFLKEVDASLPADVPIHLIMDNYATHKNDKVKAWLAAHPRYSIHFTPTSASWMNLVERFFST
LSEKWIKRQAHVSVKDLEASIEYYLETYNQNPKPFRWHKKADEILGSVARAAKALGK
LKGKPEDASHWSTRQMSRETGISPASVMRIWHAFGIKPHLEKTFKLSTDPLFVDKVQDIVGLYLNPPDRALVLCVDEKSQIQALNRTQPGLPLAPGNPAT
RTHDYKRHGTTSLFAALDVATGEVIGRLKRQHRSVEFLSFLKEVDASLPADVPIHLIMDNYATHKNDKVKAWLAAHPRYSIHFTPTSASWMNLVERFFST
LSEKWIKRQAHVSVKDLEASIEYYLETYNQNPKPFRWHKKADEILGSVARAAKALGK
Blast result :
Comments
Like others members of this group (IS870, ISRf1, ISAR1) ISPsy1 does not carry a translation termination codon. Insertion into an appropriate target sequence may generate this.
References
1] Alarcon-Chaidez,F.J., Penaloza-Vazquez,A., Ullrich,M. and Bender,C.L.(1999) Plasmid 42 (3), 210-220.
2] Alarcon-Chaidez,F.J. (1999) Direct Submission GenBank
2] Alarcon-Chaidez,F.J. (1999) Direct Submission GenBank