ISPsy1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF169828 ND Pseudomonas syringae
Pseudomonas syringae pv. glycinea
DNA section
IS Length : 2009 bp

Ends


IR Length : 8/10

IRL : GGCCCAATGGACACACAATCAGTGATGAGCAAGTGCAGAAGGTGGTTGAT
IRR : CTTGCCCAATGCTTTTGCTGCGCGAGCAACGGAACCCAGAATCTCGTCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TAGGTGCATATTAGNNNNNNNNN2

DNA sequence

GGCCCAATGGACACACAATCAGTGATGAGCAAGTGCAGAAGGTGGTTGATCAGGTTCTGAAGAGCAAACCTGAGAATGCCAGTCATAGGAGTACCCGGCA
AATGAGTCGGGAAACAGGGATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACC
GATCCGCTTTTCGTCGACAAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCC
AGGCGCTGAACCGTACGCAACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGC
TGCTCTGGATGTAGCAACAGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAAGTTGATGCCTCACTA
CCGGCTGATTTGCCGATTCATCTGATTATGGATAACTACGCAACGCACAAGACCGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCCGGTCAGCATCC
ATTTCACTCCCACGTCCCGCTCATGGATGAATCTGGTAGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAA
GGATCTGGAGGCCTCAATCGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTT
GCTCGCGCAGCAAAAGCATTGGGCAAGTAGTTTTATGTATTTCTTGTGAAACACCACACTAGTGTGGTGTTTCACAAGTACCAATGAAAATATAGTCTAT
GCTCATTTGAAACCAACTCGTGAGAGCTGAGCCTTTATATGGGCCGACCAGCGACTGTCATTGTCTTGTCCGAAGCAGAAAAAGCAGAGCTTATACGCGG
GTTAAGCAGCGTAAGGGCGCGCAGGATGCCTGTGTTTCGTGCCCAAATCATCCTGGCGTGCGCAGAGGGAGAATCTGGAAATTTCATTGCCCATCGCCTC
AACGTCAGCAAGGACGTGGTCTCGCGGTGGCGCACGCGCTTTTCAAAATGGGGATTGGTTGGTCTGAACGATGAACATCGTTCGGGTCGCCCGCGCACGA
TCAGCGATGAACAAGTACAGAAGGTGGTTGATCAGGTTCTGAAGGGCAAACCCGAAGACGCCAGCCATTGGAGTACCCGGCAAATGAGTCGGGAAACAGG
AATATCCCCGGCCAGCGTGATGCGTATCTGGCATGCCTTCGGGATCAAGCCTCACCTGGAAAAAACGTTCAAACTTTCTACCGATCCGCTTTTCGTCGAC
AAAGTGCAGGATATCGTGGGTCTTTATTTGAACCCGCCTGATAGAGCACTGGTGTTATGTGTTGATGAGAAAAGCCAGATCCAGGCGCTGAACCGTACGC
AACCTGGACTGCCTTTAGCGCCCGGAAATCCTGCGACACGTACGCACGATTACAAGCGTCACGGGACGACTTCGCTGTTTGCTGCTCTGGATGTAGCAAC
AGGCGAAGTCATTGGCCGGTTAAAGCGTCAGCATCGCAGTGTTGAGTTTCTGTCGTTTCTCAAAGAGGTTGATGCCTCACTACCGGCTGATGTGCCGATT
CATCTGATTATGGATAACTACGCAACGCACAAGAACGACAAGGTCAAGGCATGGCTGGCTGCACATCCGCGTTACAGCATCCATTTCACTCCCACGTCCG
CCTCATGGATGAATCTGGTGGAGCGGTTTTTCTCAACCCTGAGCGAGAAATGGATCAAACGCCAGGCGCATGTCAGCGTGAAGGATCTGGAGGCCTCAAT
CGAGTACTACCTTGAAACCTATAACCAGAATCCGAAGCCATTTCGCTGGCACAAAAAAGCGGACGAGATTCTGGGTTCCGTTGCTCGCGCAGCAAAAGCA
TTGGGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1071 bp357 aa9392009+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRPATVIVLSEAEKAELIRGLSSVRARRMPVFRAQIILACAEGESGNFIAHRLNVSKDVVSRWRTRFSKWGLVGLNDEHRSGRPRTISDEQVQKVVDQV
LKGKPEDASHWSTRQMSRETGISPASVMRIWHAFGIKPHLEKTFKLSTDPLFVDKVQDIVGLYLNPPDRALVLCVDEKSQIQALNRTQPGLPLAPGNPAT
RTHDYKRHGTTSLFAALDVATGEVIGRLKRQHRSVEFLSFLKEVDASLPADVPIHLIMDNYATHKNDKVKAWLAAHPRYSIHFTPTSASWMNLVERFFST
LSEKWIKRQAHVSVKDLEASIEYYLETYNQNPKPFRWHKKADEILGSVARAAKALGK

 

Blast result :
Comments
Like others members of this group (IS870, ISRf1, ISAR1) ISPsy1 does not carry a translation termination codon. Insertion into an appropriate target sequence may generate this.
References
1] Alarcon-Chaidez,F.J., Penaloza-Vazquez,A., Ullrich,M. and Bender,C.L.(1999) Plasmid 42 (3), 210-220.
2] Alarcon-Chaidez,F.J. (1999) Direct Submission GenBank