ISPssy

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s) ISPSMC
Accession numberTranspositionOriginHost
AB023075 ND Pseudomonas syringae
Pseudomonas syringae PMC8301
DNA section
IS Length : 1188 bp

Ends


IR Length : 13/17

IRL : GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTT
IRR : GGAAGGTCTGAAGTAGGCATCGATTTTTGACGCTCTCATGGCCTGAGGTT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTTCACCGAGCTTCCCTGATGAAACAGATGACCTTCGCCGATGCCGAGTACGC
GGGTAAACGTAAGCATACCCGCCGCGAGCGCTTTCTCATCGAGATGGATCAGGTTGTGCCCTGGAAAGGCTTGATTGCCCTTATCGAACCACATTATCCA
AAGGGCGAAGGTGGCCGTCCGGCTTATCCGCTGATGGCGATGCTGCGTATTCACCTGATGCAGAACTGGTTTGGTTACAGCGATCCGGCGATGGAGGAAG
CACTTTACGAGACAACGATCCTGCGCCAGTTCGCAGGGTTGAGTCTGGATCGAATCGCCGATGAAACCACGATTCTCAACTTCCGGCGTCTGTTGGAAAA
GCATGAGTTGGCAGGCGGGATTTTGCAGGTCATCAATGGCTATCTGGGTGATCGAGGTTTGATTCGGCGCCAAGGTACGGTGGTCGATGCGACGATCATT
CATGCGCCGAGCTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACGAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTTGATCAATTGCTACATGGTGAGGA
AACCTATGTCAGCGGTGATGCGGGCTACACCGGCGTGGACAAGCGTGCGGAGCTACAGGATCGTCAGATGATCTGGTCAATTGCGGCCCGCCCAAGCCGT
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTACGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTTTGGAT
GGTGCGAAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAAGGTGCTGTTTGAAGGAAAATCGATGAGTTAAGAGCG
GAAAACGTCTAATTATCTGATCGGGCGAGCTTTTTTTGAACCTCAGGCCATGAGAGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa661043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKHTRRERFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLDRIADE
TTILNFRRLLEKHELAGGILQVINGYLGDRGLIRRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVDAESGLVHSLVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVDKRAELQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
QATLFALSNLWMVRKRLLAMGEVRL

 

Blast result :
Comments
-
References
1] Inoue, Y., and Takikawa, Y. (1999) Direct submission Genbank.