ISPssy
- Family IS5
- Group IS5
Isoform Synonym(s) ISPSMC
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB023075 | ND | Pseudomonas syringae | Pseudomonas syringae PMC8301 |
DNA section
IS Length : 1188 bp
Ends
IR Length : 13/17
IRL : GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTT
IRR : GGAAGGTCTGAAGTAGGCATCGATTTTTGACGCTCTCATGGCCTGAGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGAAACTCTGAAAAAGGTTTCCTGATTTGGCAAAATACCCCAACACCTTTCACCGAGCTTCCCTGATGAAACAGATGACCTTCGCCGATGCCGAGTACGC
GGGTAAACGTAAGCATACCCGCCGCGAGCGCTTTCTCATCGAGATGGATCAGGTTGTGCCCTGGAAAGGCTTGATTGCCCTTATCGAACCACATTATCCA
AAGGGCGAAGGTGGCCGTCCGGCTTATCCGCTGATGGCGATGCTGCGTATTCACCTGATGCAGAACTGGTTTGGTTACAGCGATCCGGCGATGGAGGAAG
CACTTTACGAGACAACGATCCTGCGCCAGTTCGCAGGGTTGAGTCTGGATCGAATCGCCGATGAAACCACGATTCTCAACTTCCGGCGTCTGTTGGAAAA
GCATGAGTTGGCAGGCGGGATTTTGCAGGTCATCAATGGCTATCTGGGTGATCGAGGTTTGATTCGGCGCCAAGGTACGGTGGTCGATGCGACGATCATT
CATGCGCCGAGCTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACGAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTTGATCAATTGCTACATGGTGAGGA
AACCTATGTCAGCGGTGATGCGGGCTACACCGGCGTGGACAAGCGTGCGGAGCTACAGGATCGTCAGATGATCTGGTCAATTGCGGCCCGCCCAAGCCGT
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTACGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTTTGGAT
GGTGCGAAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAAGGTGCTGTTTGAAGGAAAATCGATGAGTTAAGAGCG
GAAAACGTCTAATTATCTGATCGGGCGAGCTTTTTTTGAACCTCAGGCCATGAGAGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
GGGTAAACGTAAGCATACCCGCCGCGAGCGCTTTCTCATCGAGATGGATCAGGTTGTGCCCTGGAAAGGCTTGATTGCCCTTATCGAACCACATTATCCA
AAGGGCGAAGGTGGCCGTCCGGCTTATCCGCTGATGGCGATGCTGCGTATTCACCTGATGCAGAACTGGTTTGGTTACAGCGATCCGGCGATGGAGGAAG
CACTTTACGAGACAACGATCCTGCGCCAGTTCGCAGGGTTGAGTCTGGATCGAATCGCCGATGAAACCACGATTCTCAACTTCCGGCGTCTGTTGGAAAA
GCATGAGTTGGCAGGCGGGATTTTGCAGGTCATCAATGGCTATCTGGGTGATCGAGGTTTGATTCGGCGCCAAGGTACGGTGGTCGATGCGACGATCATT
CATGCGCCGAGCTCGACCAAGAACAAGGACGGCAAACGCGATCCCGAAATGCATCAGACGAAGAAAGGAAACCAGTATTTCTTCGGCATGAAAGCGCATA
TCGGCGTCGATGCCGAGTCGGGTTTAGTCCATAGCCTGGTGGGTACTGCGGCGAATGTGGCGGACGTGACTCAGGTTGATCAATTGCTACATGGTGAGGA
AACCTATGTCAGCGGTGATGCGGGCTACACCGGCGTGGACAAGCGTGCGGAGCTACAGGATCGTCAGATGATCTGGTCAATTGCGGCCCGCCCAAGCCGT
TATAAAAAGCATGGCGAGAAAAGTTTGATCGCACGGGTCTATCGCAAAATCGAGTTCACGAAAGCCCAGTTACGGGCGAAGGTTGAACATCCGTTTCGCG
TGATCAAGCGCCAGTTTGGTTATACGAAAGTCCGGTTTCGCGGGCTGGCTAAAAACACCGCGCAACAGGCTACTCTGTTTGCCTTGTCGAACCTTTGGAT
GGTGCGAAAACGGCTGCTGGCGATGGGAGAGGTGCGCCTGTAATGCGGAAAAACGCCTTGGAAAGGTGCTGTTTGAAGGAAAATCGATGAGTTAAGAGCG
GAAAACGTCTAATTATCTGATCGGGCGAGCTTTTTTTGAACCTCAGGCCATGAGAGCGTCAAAAATCGATGCCTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 66 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKHTRRERFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLDRIADE
TTILNFRRLLEKHELAGGILQVINGYLGDRGLIRRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVDAESGLVHSLVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVDKRAELQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
QATLFALSNLWMVRKRLLAMGEVRL
TTILNFRRLLEKHELAGGILQVINGYLGDRGLIRRQGTVVDATIIHAPSSTKNKDGKRDPEMHQTKKGNQYFFGMKAHIGVDAESGLVHSLVGTAANVAD
VTQVDQLLHGEETYVSGDAGYTGVDKRAELQDRQMIWSIAARPSRYKKHGEKSLIARVYRKIEFTKAQLRAKVEHPFRVIKRQFGYTKVRFRGLAKNTAQ
QATLFALSNLWMVRKRLLAMGEVRL
Blast result :
Comments
-
References
1] Inoue, Y., and Takikawa, Y. (1999) Direct submission Genbank.