ISPsp2
- Family ISL3
- Group
Isoform Synonym(s) Tn401
Accession number | Transposition | Origin | Host |
---|---|---|---|
M57500 | ND | Pseudomonas sp. | Pseudomonas sp. EST1001 plasmid pEST1226 |
DNA section
IS Length : 1416 bp
Ends
IR Length : 23/24
IRL : GGCTCTTCGCATTTAAGGGTGTAGAAAAAATCTGACCGGCTGGAAAAGGA
IRR : GGCTCTTCGCATTTAAGGGTGTAGCTGATTTCTAAACCCTCCTGACTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCTCTTCGCATTTAAGGGTGTAGAAAAAATCTGACCGGCTGGAAAAGGAGTCGAGGATCTTAGAAAATGTAAGCTCTCACACCAACAAAAACTAAGCCC
CCGACGTGAACAATCTTACCTTTTCTAGCCCTGATCTTTCCAGCTTTTGCCAACTGAATAACCTCGGCCTGACTGCCACTGGACAACATCTTTGTGCAGA
GCGCGCCGTCATCGAATGTCGTTTAACCAAAGCACCCGAGCCATGCCCCAAGTGCGGGGCTGCTGGTGTTTCACGCGGTACTGTCGATAGGCATCTTGCT
CACACACTTACGGACAACGACCAACCAGATTGCTGCTGCGTATCCGTCGCTGGCGTTGTGCTTGCGGCTGTTTCTGGCATGAAGATACAAACAGTGCAGC
ACCTCCACGTTCAAAGCTTTCATATGGCGATACGCTGGGCATTAGCTGCCATCGTGCTGGATCATCTGTCGGTATCTCGTGTTGCGAGCCAGCTTGATGT
TGCATGGCACACCGCTAATAATGCCATTATCAACGAAGGACGGCGCCTGCTTTTTAATGACTCGACACGTTTTGACGGTGTGACCGTGCTGGGCGTGGAT
GAGCATGTTTGGCGACATACACGCTGTGGTGACAAGTACGTCACCATCGTGGTTGACCTTACGCCCGTGCGTAACAAAAACGGGCCGGCCCGCTTGCTCG
ATGTGCTGGAAGGCCGCTCCAAACAAGCCTTTAAGCAATGGCTACAGAGTCGCCCCAAATCGTGGCGTGACCAGATCGAAAGCATTGCCATGGACGGTTT
TACGGGGTTTAAATCTGCAGCGCAAGAAGCCCTGCCTCAAGCCCAAACCGTGCTGGATCCTTTCCATGTCGTGCGCTGGGCAAGCAACATGCTGGATGAA
TGCCGCCGGCGTGTGCAACACGACATCCTGGGCCGCAGAGGGCGTAAAAATGACCCGCTCTACAAAAGCCGTCGAACGCTACTGACTCGGATCAGCTACC
TGTCTGACGCCAACAAAAAGCAACTGTTCCAGCTGTTTGCAGATGAGCACCACCTCGAAGTGGATTGCACCTGGAGCATGTACCAACGGGTGGTCAGCGC
CTACAACGAGCCGGATCGAAAACGCGGTAAAAAACTCATGGAAGAGGTCATAAATATCATTACAGTTAGCGACTTGCCCAAAGCGCTCATCGAGGTGAAA
GGCTTGGGGGAAACGCTGAAAAAATACGCTGAGAGCATCCTTGCCTACTTCGACCGGCCAGGAACCAGCAACGGTCCAACAGAAGCTATCAACGGGCGAC
TTGAGCACTTACGAGGTACCGCCTTGGGCTTTAGAAATTTAACCAATTACATAGCCAGGTGCTTGCTGAAGTCAGGAGGGTTTAGAAATCAGCTACACCC
TTAAATGCGAAGAGCC
CCGACGTGAACAATCTTACCTTTTCTAGCCCTGATCTTTCCAGCTTTTGCCAACTGAATAACCTCGGCCTGACTGCCACTGGACAACATCTTTGTGCAGA
GCGCGCCGTCATCGAATGTCGTTTAACCAAAGCACCCGAGCCATGCCCCAAGTGCGGGGCTGCTGGTGTTTCACGCGGTACTGTCGATAGGCATCTTGCT
CACACACTTACGGACAACGACCAACCAGATTGCTGCTGCGTATCCGTCGCTGGCGTTGTGCTTGCGGCTGTTTCTGGCATGAAGATACAAACAGTGCAGC
ACCTCCACGTTCAAAGCTTTCATATGGCGATACGCTGGGCATTAGCTGCCATCGTGCTGGATCATCTGTCGGTATCTCGTGTTGCGAGCCAGCTTGATGT
TGCATGGCACACCGCTAATAATGCCATTATCAACGAAGGACGGCGCCTGCTTTTTAATGACTCGACACGTTTTGACGGTGTGACCGTGCTGGGCGTGGAT
GAGCATGTTTGGCGACATACACGCTGTGGTGACAAGTACGTCACCATCGTGGTTGACCTTACGCCCGTGCGTAACAAAAACGGGCCGGCCCGCTTGCTCG
ATGTGCTGGAAGGCCGCTCCAAACAAGCCTTTAAGCAATGGCTACAGAGTCGCCCCAAATCGTGGCGTGACCAGATCGAAAGCATTGCCATGGACGGTTT
TACGGGGTTTAAATCTGCAGCGCAAGAAGCCCTGCCTCAAGCCCAAACCGTGCTGGATCCTTTCCATGTCGTGCGCTGGGCAAGCAACATGCTGGATGAA
TGCCGCCGGCGTGTGCAACACGACATCCTGGGCCGCAGAGGGCGTAAAAATGACCCGCTCTACAAAAGCCGTCGAACGCTACTGACTCGGATCAGCTACC
TGTCTGACGCCAACAAAAAGCAACTGTTCCAGCTGTTTGCAGATGAGCACCACCTCGAAGTGGATTGCACCTGGAGCATGTACCAACGGGTGGTCAGCGC
CTACAACGAGCCGGATCGAAAACGCGGTAAAAAACTCATGGAAGAGGTCATAAATATCATTACAGTTAGCGACTTGCCCAAAGCGCTCATCGAGGTGAAA
GGCTTGGGGGAAACGCTGAAAAAATACGCTGAGAGCATCCTTGCCTACTTCGACCGGCCAGGAACCAGCAACGGTCCAACAGAAGCTATCAACGGGCGAC
TTGAGCACTTACGAGGTACCGCCTTGGGCTTTAGAAATTTAACCAATTACATAGCCAGGTGCTTGCTGAAGTCAGGAGGGTTTAGAAATCAGCTACACCC
TTAAATGCGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1299 bp | 432 aa | 106 | 1404 | + | No |
Chemistry : Unknow
ORF sequence :
MNNLTFSSPDLSSFCQLNNLGLTATGQHLCAERAVIECRLTKAPEPCPKCGAAGVSRGTVDRHLAHTLTDNDQPDCCCVSVAGVVLAAVSGMKIQTVQHL
HVQSFHMAIRWALAAIVLDHLSVSRVASQLDVAWHTANNAIINEGRRLLFNDSTRFDGVTVLGVDEHVWRHTRCGDKYVTIVVDLTPVRNKNGPARLLDV
LEGRSKQAFKQWLQSRPKSWRDQIESIAMDGFTGFKSAAQEALPQAQTVLDPFHVVRWASNMLDECRRRVQHDILGRRGRKNDPLYKSRRTLLTRISYLS
DANKKQLFQLFADEHHLEVDCTWSMYQRVVSAYNEPDRKRGKKLMEEVINIITVSDLPKALIEVKGLGETLKKYAESILAYFDRPGTSNGPTEAINGRLE
HLRGTALGFRNLTNYIARCLLKSGGFRNQLHP
HVQSFHMAIRWALAAIVLDHLSVSRVASQLDVAWHTANNAIINEGRRLLFNDSTRFDGVTVLGVDEHVWRHTRCGDKYVTIVVDLTPVRNKNGPARLLDV
LEGRSKQAFKQWLQSRPKSWRDQIESIAMDGFTGFKSAAQEALPQAQTVLDPFHVVRWASNMLDECRRRVQHDILGRRGRKNDPLYKSRRTLLTRISYLS
DANKKQLFQLFADEHHLEVDCTWSMYQRVVSAYNEPDRKRGKKLMEEVINIITVSDLPKALIEVKGLGETLKKYAESILAYFDRPGTSNGPTEAINGRLE
HLRGTALGFRNLTNYIARCLLKSGGFRNQLHP
Blast result :
Comments
ISPsp2 putative transposase is 58 % identical to that of IS1096. ISPsp2 has apparently transposed into the 3' end of the pheA gene (phenol 2-monooxygenase), and the last 8 codons (7 aa) of pheA correspond to the 5' end of ISPsp2.
References