ISPpu1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ245436 ND Pseudomonas putida
Pseudomonas oleovorans GPo1
Pseudomonas putida GPo1
DNA section
IS Length : 1164 bp

Ends


IR Length : 16/24

IRL : TGTCCTGCCTCCGAAATAAGTTTCTAGCCTGAGCTATGCTTCTGTGGTCA
IRR : TGTGCCGTCTCACAAATAATGCTCCTCATCCCTGTGAGACCATTGCCTCA

Insertion site


Left flankDirect repeatRight flankDR Length
AGCACCCTCTCTAATGGATCGAAA4

DNA sequence

TGTCCTGCCTCCGAAATAAGTTTCTAGCCTGAGCTATGCTTCTGTGGTCAGTCAGTACTTGGAGTGATCACATGAATTCTCAGGACATCGTGCTCAGTGA
AGACGAACAAATTGAACTGAGTCGACGCATCAGATCGGCCACTATCCGTCAGCGCGACGGTCGTCGGGCGCGGGTGATTTTACTGGCGGCTCAAGGTTGT
TCGCGCAACGAGATTGCCCGGTTGACCGGTCTCTCCGTTGTTTCAGTCACTCGCTGGTGCAAGCGTTTTCAAGAGCTACGTCTGCAAGGCCTGGTGGATC
TGCCCGGACGCGGTCGCAAGCCATCCTTGCCGGCCGAAGCATTGAAACGAACCCTTGAGCAAGTCACTCAACCGCGTATCGGTCAACCTCGCTGGAGCTG
CCGAAGCATGGCGCGAGTCGCCGGTATCTCGCCGGCCAGCGTCCAGCGCATATGGGCCGCCAACGATATAAAGCCGCACCTGACACGTACCTTCAAACTG
TCCAACGATCCAAACTTCGAAGAGAAATTCTGGGACGTTATTGGGCTGTATCTGGATCCGCCGGATAAGGCACTGGTGCTCTGTTGCGATGAAAAAAGCC
AGGTTCAGGCCTTGGAGCGCACTCAGCCTGGACTGCCTTTGGGGATCGGTCATATCCGCACGCAATCGCACGATTATATCCGCCATGGCACCGTCACCTT
GTTCACTGCGCTGGATTATCTTCAGGGACGCTTGATCAGTTCCATCGAGCGCCAACACCGGCATCAGGAATGGCTGGAGTTTCTCAAGAAGATCAATCGC
GAAACGCCCAAGCATCTTCAGCTGCATTTGATCGTCGACAACTACGCCACGCACAAGCATCCCAAAGTGAGGGCGTGGCTTGAGAAGCACAAACGCTTCC
ACATGCATTTCACCCCGACCTCCAGTTCGTGGATGAACATGGTTGAACGCTTCTTTCGCGATATCACGGTGTACCTGCGTGATGGCAGTTTCAGTTCGGT
TCGCGAACTGGAAAGCTCGATTACCACGTTCCTGGCACTGCGAAATGCGCAGCCGACTCGCTACGTCTGGAACGCCAAGGGGGAAGATATTTTGAACAAG
ATACAGCGAGCCCGTGAGGCAATGGTCTCACAGGGATGAGGAGCATTATTTGTGAGACGGCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1068 bp355 aa721139+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNSQDIVLSEDEQIELSRRIRSATIRQRDGRRARVILLAAQGCSRNEIARLTGLSVVSVTRWCKRFQELRLQGLVDLPGRGRKPSLPAEALKRTLEQVTQ
PRIGQPRWSCRSMARVAGISPASVQRIWAANDIKPHLTRTFKLSNDPNFEEKFWDVIGLYLDPPDKALVLCCDEKSQVQALERTQPGLPLGIGHIRTQSH
DYIRHGTVTLFTALDYLQGRLISSIERQHRHQEWLEFLKKINRETPKHLQLHLIVDNYATHKHPKVRAWLEKHKRFHMHFTPTSSSWMNMVERFFRDITV
YLRDGSFSSVRELESSITTFLALRNAQPTRYVWNAKGEDILNKIQRAREAMVSQG

 

Blast result :
Comments
ISPpu1 is located between alkL and alkN, genes involved in alkane degradation by Pseudomonas putida (oleovorans) GPo1.
ISPpu1 is 78% aa similar to IS870-like.
References