ISPps1

  • Family IS91
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF 342828 ND Pseudomonas huttiensis
Pseudomonas huttiensis NRRLB-12228
Pseudomonas pseudoalcaligenes JS45
Acidovorax avenae
DNA section
IS Length : 1863 bp

Ends


oriIS : GCCGCCTGCGCGCAAGTAAGTCCGCAGCCAAGCTACCCTGACAAGGCCCGAACTGGCGACGGTTCGGGCCTTGTGCTTTGCGTACCCAAACAATCGCCGC II struct. : No
terIS : TTGAGCGGCAAGCGAGCGCTCAACCTTCCTTGGCCGAACGTGTTTCGAGGCCCAAAACTCGTGCCATACTTGGCCTCATGCGGTTGAATTTCCTATCCGT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site

DNA sequence

GCCGCCTGCGCGCAAGTAAGTCCGCAGCCAAGCTACCCTGACAAGGCCCGAACTGGCGACGGTTCGGGCCTTGTGCTTTGCGTACCCAAACAATCGCCGC
AGAATACTGTGCATTTGTACAGCATTCATGTCAGCCACTTCCAAGCCCAAGCTCTACAACCCACGCCACCCCGAACGCACGCTGCTGTACCAAACGGTAG
CCGAGCACTACGAGACCTGGCTAGAGTTGGCCAGCGCGGGTCAGTTCGACGGCCAGGGCGACCACCACACCCCCAAGCCCTTCGTGCGCAAAGCGTTTGC
CAAGTATCTTGAGTGCGGCATCTTTGCCCATGGCTTTGCCCGCGCTCGCTGCGGCGACTGTGGGCACGACTACTTTGTAGCCTTCTCCTGCAAAGGCCGG
GGAGTCTGCCCCTCGTGCACCACCCGGCGCATGGTGGAGACAGCAGCGCACCTGAACGATCACGTATTCCCCCGCCTGCCGGTGCGCCAGTGGGTGCTCT
CCGTGCCCAAGAGGTTGCGGTACTTCATGCAACGCGACGGAGCGGTGCTGAGCATGGTGCTGCGCATCTTTCTGCGGGTGATCGCACAAACTCTGCAGAC
CCACAGCCCCGGTGCGGCCCATATGGACAAGGCAGGCCTGCACATCGGTGCCATCGCCTTCATTCACCGATTCGGCTCCAGCCTCAATGAACACGTCCAC
TTCCACGTTTGTGTGGTGGACGGGGTGTTTGAGGAAGTGGAGGGCGAGGGCGATGCTGATGCGACCCCTCGAATCTCATCGCCGGGTGTCATCTTTCACG
CGGCCACCGGCATCGATGCGGCTACCGTGGCCCCAGTGCAGACCACACTGCAAAAACGCATCCTGCGCGCCTTCGTTGCTCGGGGCCTGCTGGAGAACTG
TGACGCCAAAGACATGCTGGGCTACAAACACAGCGGCTTCTCGGTGGACGCCGGTGTCTGCATCGAAGCCCACGACCGCGCTGCGCTGGAGCGGCTGCTG
CGCTATTGCGCGCGTCCACCGTTTTCCATGGAGCGCCTACGCAAAGAGGGAAGCAAACTGGTGTACCGCTGTGCCAAACAGCGCAGCGAGCCCACCAGTG
ACAAGCGTGGTGCCAAGGCAGATGAGCTGCACCTCACACCGCTGGAACTGATCGACCGCATCGCCGCGCTGGTGCCACCGCCACGCACCCACCGGCACCG
CTACTTTGGTGTGCTGGCACCAAACTCGCCGCTGAGAGCGGCGGTAACGGCGCTGGCCCAGCCTGCTGCGTCGCAACCAGCCACGGTGGAGACTGCACAA
CCTGGCGCGGGCGTACCTGGGGTGGCGGCGCCGGGCAACGCGGCCACACCCACACCCGAACCTGAAGCACGCCCGAAGCGAGCGGCGCATTACTTGTGGG
CGGTGCTGATTGCCCGCATCTACGAGGCATTTCCGCTGCTGTGCCCCATGTGCGGTGGGCAGATGCGCATCATTGCCTTCATCACCCACAGCGCCGAAAT
CCGCCACATCCTGAACCACATCGGGGTGGAGTCTGCCCCCCCGCACATCACCCCGGCACGCGGGCCACCGCTGTGGGAGGGCTGCGACGCGCCGGTGGAT
GATGGTGCGCAAGGCGAGCCGGATTGGGATCTGGCAGCTCAACCCGACGAGGTAGACCAGCGCGTCAATTGGTGACCCAGTGAAGCGGCGGTATCCATCG
CTGCGGGGAAGCAGCTGCACGCGCGCCAGGCCCAAATGCATACTGCCTCCCAAGCTCTTGCCATTGAGCGGCAAGCGAGCGCTCAACCTTCCTTGGCCGA
ACGTGTTTCGAGGCCCAAAACTCGTGCCATACTTGGCCTCATGCGGTTGAATTTCCTATCCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1548 bp515 aa1241671+No
ORF function : Transposase
Chemistry : Y2

ORF sequence :

MSATSKPKLYNPRHPERTLLYQTVAEHYETWLELASAGQFDGQGDHHTPKPFVRKAFAKYLECGIFAHGFARARCGDCGHDYFVAFSCKGRGVCPSCTTR
RMVETAAHLNDHVFPRLPVRQWVLSVPKRLRYFMQRDGAVLSMVLRIFLRVIAQTLQTHSPGAAHMDKAGLHIGAIAFIHRFGSSLNEHVHFHVCVVDGV
FEEVEGEGDADATPRISSPGVIFHAATGIDAATVAPVQTTLQKRILRAFVARGLLENCDAKDMLGYKHSGFSVDAGVCIEAHDRAALERLLRYCARPPFS
MERLRKEGSKLVYRCAKQRSEPTSDKRGAKADELHLTPLELIDRIAALVPPPRTHRHRYFGVLAPNSPLRAAVTALAQPAASQPATVETAQPGAGVPGVA
APGNAATPTPEPEARPKRAAHYLWAVLIARIYEAFPLLCPMCGGQMRIIAFITHSAEIRHILNHIGVESAPPHITPARGPPLWEGCDAPVDDGAQGEPDW
DLAAQPDEVDQRVNW

 

Blast result :
Comments
ISPps1 is 35% aa similar to IS1294.
This IS is also present in Pseudomonas pseudoalcaligenes ( Accession number : AF028594 )JS45 and Acidovorax avenae NRRLB-12227 ( Accession number : AF086815 ).
References
1] Eaton, R.W. (2001) Direct submission GenBank