ISPp1
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Z32771 | ND | Pediococcus pentosaceus | Pediococcus pentosaceus PPE1.0 |
DNA section
IS Length : 1039 bp
Ends
IR Length : 21/23
IRL : GGTAGATTGTAAAATTAATCCGACGCTGTTCGGACAAAAAGATCAGCTTC
IRR : GGTAGATTGCAAATTTAATCCGAATTTTTGGACAAATTTGTCAGCATAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGTAGATTGTAAAATTAATCCGACGCTGTTCGGACAAAAAGATCAGCTTCCTTAAAATGGTGTTTACCACAAACCCATCTTTTAGGAGCTGATCTTTTGT
CTAGTATAACCTATTCCGAACGAATTAAAATCGAAACCTTTTGTGAACTAGGGCTGTCCAATATCCAAATGGGCGTTCGGCTGAACCGATCACCGTCAAC
AATTTCTTATGAATTATCTCGATGTCAACCTTATCAGGCTGAATTAGCACAAACAGATGCCGAATACAAGCGATCACAATGTGGTCGGAAAACTAAGCTG
AGCGATGAGTTAAAGCAAAAAATTCTCAACCATTTACGTCTAAGCTGGTCACCAGGAATGATTGCTCACGAATTTAAACTAGCTACTAAATCTATTTATA
ATTGGCTAAATCAGGGGAGAATTGGTTTCTCCTTGAATGATCTACCTGAACATGGCGTACGCCAACGGCGTAACGTTGACCAACGATCCAAATATAATCA
ATCTTTGGGGCGATCAATTGAACAGCGTCCCATGATGTTTAATCAACGTAATCGCATCGGCGATTTTGAACTAGATACAGTCGTTGGTCCTCGTGGGCAT
AGTAAGGCAGTTTTATTAACTTTAATCGATCGCAAATCACGGTTCCTTTGGGCCTACCGGTTAAAAGATCGGACGACAGCGACTGTTAATGAAGCCCTAA
CTAAGTTCCTAACCACTTTTAATGGTCCGGTGCACAGCTTCACGGTGGACCGTGGCACTGAGTTTAGCGGTCTAGTATCACTTGAATCACAATATGGTAT
TAAGACCTATTACTGCCATGCTTATACTCCAGCTGACGTGGTAGTAATGAACGCTTTAATCGGAATTTACGTTGTTTTTATCCTAAAGGGACTCGTTTTG
AGCACATTAGTACTCAAGATTTAACGACGACGTTACTCCAAATTAACCAGCGACCGCTTAAAATACTCGACTAGCAAACACCGTATCAGGTTATGCTGAC
AAATTTGTCCAAAAATTCGGATTAAATTTGCAATCTACC
CTAGTATAACCTATTCCGAACGAATTAAAATCGAAACCTTTTGTGAACTAGGGCTGTCCAATATCCAAATGGGCGTTCGGCTGAACCGATCACCGTCAAC
AATTTCTTATGAATTATCTCGATGTCAACCTTATCAGGCTGAATTAGCACAAACAGATGCCGAATACAAGCGATCACAATGTGGTCGGAAAACTAAGCTG
AGCGATGAGTTAAAGCAAAAAATTCTCAACCATTTACGTCTAAGCTGGTCACCAGGAATGATTGCTCACGAATTTAAACTAGCTACTAAATCTATTTATA
ATTGGCTAAATCAGGGGAGAATTGGTTTCTCCTTGAATGATCTACCTGAACATGGCGTACGCCAACGGCGTAACGTTGACCAACGATCCAAATATAATCA
ATCTTTGGGGCGATCAATTGAACAGCGTCCCATGATGTTTAATCAACGTAATCGCATCGGCGATTTTGAACTAGATACAGTCGTTGGTCCTCGTGGGCAT
AGTAAGGCAGTTTTATTAACTTTAATCGATCGCAAATCACGGTTCCTTTGGGCCTACCGGTTAAAAGATCGGACGACAGCGACTGTTAATGAAGCCCTAA
CTAAGTTCCTAACCACTTTTAATGGTCCGGTGCACAGCTTCACGGTGGACCGTGGCACTGAGTTTAGCGGTCTAGTATCACTTGAATCACAATATGGTAT
TAAGACCTATTACTGCCATGCTTATACTCCAGCTGACGTGGTAGTAATGAACGCTTTAATCGGAATTTACGTTGTTTTTATCCTAAAGGGACTCGTTTTG
AGCACATTAGTACTCAAGATTTAACGACGACGTTACTCCAAATTAACCAGCGACCGCTTAAAATACTCGACTAGCAAACACCGTATCAGGTTATGCTGAC
AAATTTGTCCAAAAATTCGGATTAAATTTGCAATCTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
883 bp | 293 aa | 94 | 976 | + | No |
Chemistry : DDE
ORF sequence :
LLSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSQCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKS
IYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMFNQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNE
ALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPADRGSNERFNRNLRCFYPKGTRFEHISTQDLTTTLLQINQRPLKILD
IYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMFNQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNE
ALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPADRGSNERFNRNLRCFYPKGTRFEHISTQDLTTTLLQINQRPLKILD
Blast result :
Comments
This element has been found by Vaughan and de Vos (1995) through its similarities to IS1070. However, contrary to these authors' suggestion, the element is apparently complete: its coordinates are (9404-10442) CS. ISPp1 is associated with the sucrose and raffinose operons and is located between the alpha-galactosidase and fructose 6-phospohotransferase genes. (Note that on the same 22-kb fragment is another short sequence (30-bp) nearly identical to the 5' end of IS1070). Finally, the ISPp1 ORF considered here is a fusion between two overlapping ORFs: (94-837) and (837-974). The last 45 aa contain a highly conserved domain. The reason for this frameshift remains to be determined.
References
1] Leenhouts, K.K.J., Bolhuis, A.A., Kok, J.J., and Venema, G. (1994) EMBL Data Library, Rel. 39.
2] Vaughan, E.E., and de Vos, W.M. (1995) Gene 155, 95-100.
2] Vaughan, E.E., and de Vos, W.M. (1995) Gene 155, 95-100.