ISPg5
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF224744 | ND | Porphyromonas gingivalis | Porphyromonas gingivalis |
DNA section
IS Length : 1512 bp
Ends
IR Length : 36/37
IRL : TGACGTGTACTGAAAAAAGTTGACAGTTGGCGGGATGCAACCAGTATCCA
IRR : TGACGTGTACTGAAAAAAGTTGACAGTTGGGCGGGATAGTTCTACAATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNTTCAGAA | AAA | TCTACTANNN | 3 |
DNA sequence
TGACGTGTACTGAAAAAAGTTGACAGTTGGCGGGATGCAACCAGTATCCATTATGGGCAAACATTTAAACAACTTTGAACGCCTTAGCATCCTTGAGGAT
TACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTCGTAAATTTGGACTCGAAGATA
AAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGT
CCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAAC
TCCGAAGCCAAGTAGTTCACCGTTTATCAGAGCCAGAGCCTAGGTATCCTATTGCTCGACTCTGCGAACTGCTTGGCTTTAGCCGTCAGGCCTTTTATAA
ACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAA
GCTGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTA
TGATGCTGCGCAAACGGTCTGTGCGCCCTCAGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCC
TCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGT
ATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGA
GCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCAGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGAC
GGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTC
CTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAA
ATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCG
AAATTAGACTTAAGGGTAAGGGGTGTCAACCTAAAGTAGAATTATAGAAAGAACCAGTAAACCAATTGTAGAACTATCCCGCCCAACTGTCAACTTTTTT
CAGTACACGTCA
TACCTCTCGGGGTCAGATAGCAAAGTAGCCATTGAGCAGAAATATGGTCTAAGTCATGGTCTCATTCGCTCTTGGCTTCGTAAATTTGGACTCGAAGATA
AAGTTCATCCAGTCCCAATGAAAGTGTCCCAATCCCCCCAGAGTGAGCTACCCCTGAACGAAAAAGAAGAATTAGAGCAGCTACGTAAAGAAAATCGTGT
CCTCAAGAGTCGTCTCAAGCGAGAAGAACTAGGGCATCAAGCCTACAAGCTACTTGTAGAGTTGGCAGAAGAAACCTACGGCATTCAGATACGAAAAAAC
TCCGAAGCCAAGTAGTTCACCGTTTATCAGAGCCAGAGCCTAGGTATCCTATTGCTCGACTCTGCGAACTGCTTGGCTTTAGCCGTCAGGCCTTTTATAA
ACGTCATCTCAACGATTTAGCTAGGCACGAGGAGGATGTCCTATGCAGTAGTATCATCCAATATTGTTGGCACTTAAGACAAGCAGAGCACCTACCTCAA
GCTGGCTTCCGAGAGCTCATGGTGCTTTGTCAGCAATACTTCGGCCCCAAGTTCACGCTTGGGCGCGATCGCTTTTGCGCCCTACTCAGACGCCATGGTA
TGATGCTGCGCAAACGGTCTGTGCGCCCTCAGACAACCAACTCTCGGCATAGGCTCTACAAGTATGAAGACCTGCTCAATACAGAGCCTAAGTTTGTGCC
TCAAAGACCTGGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTCTCCCTACTGACCGATGCCTATAGTCGCTGT
ATCGTAGGGTATTGCTTACATCCTACCCTAGAGGTTGAAGGCTGTTTGAATGCTCTACATCAAGCCTTTGCTTTCTACGATCAGCATCAAATTGATACGA
GCAATATGATTCATCATAGCGACCGAGGCATTCAGTATGCCAGTAAGAGCTACACCGATCTGTTGCATGGGCGAGGCTGTCGCATCAGCATGACTCAGAC
GGGAGATCCTCTGCATAATGCATTGGCTGAGCGGATGAACAATACGCTCAAGAACTCGTGGCACATCTCCTCTTCGAAGCAGTCTTTTGATCAAGCACTC
CTTTCTGTAGACCGAGCCGTGCGCATGTACAACGAGGCGCGTCCACATCAAGCTCTAGGGGCGAAAACGCCTATGCAAGTCATTGCGCCAGAGTCTAAAA
ATCCGTTACTAACGAGGAGGGAGCATGGGCCAGAGATTGCCCCCGAGCTATACCGAAGGATGAATGTCAGACAAAGAGCTAACTTTGCTCGTGTCAACCG
AAATTAGACTTAAGGGTAAGGGGTGTCAACCTAAAGTAGAATTATAGAAAGAACCAGTAAACCAATTGTAGAACTATCCCGCCCAACTGTCAACTTTTTT
CAGTACACGTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
381 bp | 126 aa | 35 | 415 | + | No |
Description : First part of the transposase
ORF sequence :
MQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLRKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELG
HQAYKLLVELAEETYGIQIRKNSEAK
HQAYKLLVELAEETYGIQIRKNSEAK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 289 | 1407 | + | No |
Description : Second part of the transposase
ORF sequence :
RKSCPQESSQARRTRASSLQATCRVGRRNLRHSDTKKLRSQVVHRLSEPEPRYPIARLCELLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAE
HLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDA
YSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSF
DQALLSVDRAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN
HLPQAGFRELMVLCQQYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDA
YSRCIVGYCLHPTLEVEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSF
DQALLSVDRAVRMYNEARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1373 bp | 457 aa | 35 | 1407 | + | Yes |
Chemistry : DDE
ORF sequence :
MQPVSIMGKHLNNFERLSILEDYLSGSDSKVAIEQKYGLSHGLIRSWLRKFGLEDKVHPVPMKVSQSPQSELPLNEKEELEQLRKENRVLKSRLKREELG
HQAYKLLVELAEETYGIQIRKKLRSQVVHRLSEPEPRYPIARLCELLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQ
QYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLE
VEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYN
EARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN
HQAYKLLVELAEETYGIQIRKKLRSQVVHRLSEPEPRYPIARLCELLGFSRQAFYKRHLNDLARHEEDVLCSSIIQYCWHLRQAEHLPQAGFRELMVLCQ
QYFGPKFTLGRDRFCALLRRHGMMLRKRSVRPQTTNSRHRLYKYEDLLNTEPKFVPQRPGELLVADITYVAYQDGFAYLSLLTDAYSRCIVGYCLHPTLE
VEGCLNALHQAFAFYDQHQIDTSNMIHHSDRGIQYASKSYTDLLHGRGCRISMTQTGDPLHNALAERMNNTLKNSWHISSSKQSFDQALLSVDRAVRMYN
EARPHQALGAKTPMQVIAPESKNPLLTRREHGPEIAPELYRRMNVRQRANFARVNRN
Blast result :
Comments
ORF1 is 52%aa similar to IS1501 and ORF2 48% to ISSd1.
Six of the 11 ISPg5 elements have perfects three-base duplicated target sites flanking the element.
Six of the 11 ISPg5 elements have perfects three-base duplicated target sites flanking the element.
References
1] Califano,J.V., Kitten,T., Lewis,J.P., Macrina,F.L., Fleischmann,R.D., Fraser,C.M., Duncan,M.J. and Dewhirst,F.E. (2000) Infect. Immun. 68 (9), 5247-5253