ISPa42

  • Family Tn3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) TnPa42
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa DK2
DNA section
IS Length : 16941 bp

Ends


IR Length : 35

IRL : GGGGTCATGCCGAGATAAAGGAAAATTAGGACATAGTGGTTCTATCCTAT
IRR : GGGGTCATGCCGAGATAAAGGAAAATTAGGACATACGCGCTGCAACTGAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGGTCATGCCGAGATAAAGGAAAATTAGGACATAGTGGTTCTATCCTATTGATATAAATAGAATTTCACTTGGCCTGTTTGTCCCGCCTGCCTCATGCC
CGGAAGCGTCTATGCTGATCTATTTGCATGCATAGGGGCTGAGCGATGGCGGCTTTGGAGAGAACGGCATATCCACGACTAGCAACTACCCTCAGTGCGA
AGGACTTACACCGCAACTATTCGCTTTCCTCAGGAGAGCTTGACTGGATTTCCAGGACAGCTCGTAGCCCAGCCCTTTCCCTTGGGCTGGCAGTCCAGCT
CAAGGTATTCCAAGAGCTCCATTACTTTCCTCCCCTAGACGAGATACCTCCAGAAATCACTGACCACATCAGGAATACACTCGGTTTTGGCCCTCGTATC
ACTTCCCGCTATACCAACTCGCGTACTTTTTATAGGCATCAGGCGGCCATTCGTGAGTACCTCCAGATCAAGGCTTTCTATGGTAGTGAAGCGCTCACCA
TAGCTCTCCACCTTGCGCACGAATCTGCCGAGGTACTCGACCAGCGGGCGGATATCATCAATGTGCTGATCGGCGAGTTGCTGCAGCGCAGCTACGAACT
CCCAGCCTATTCCACCCTCAATGACGCTGCTGAGGATGCCTTAGTTGCAATGCAGGAGCGGCTATTCAATCTCGTTGTGACCAGGGCGCCAATTGAGGTG
GTCTACAAACTGAAAGAACTGCTCGAAACGGATTTCGGGCGACGCCAAAGTGACTTCAACGCCCTCAAGCAGGCACCCAAGAAGCCATCCCGCAAACACT
TGGAAGTGCTGATAGATCACATGGCTTGGCTCGAGAGCTTTGGGAATCTAGATGCCATTTTTGATGGAATCGTCGATACCAAAATCCGCCACTTCGCTGC
CCAAGCTGCGGCGTCGGACGTCGCCGAGCTTAAGGACTGTTCGCTGCCGAAGCGTTACACGCTGATGCTTGCCTTGATCTATCGGATGCGCGTGCGGACT
CGGGATCACCTAGCCGAGATGTTCATCCGGCGAATCTCTACGATTCACAAACGTGCCAAGGAAGAACTAGAGCAAATCCAAGCACGGCAACGTCAGAAGC
TGGAGCAGCTGGCGGCCACCCTGGACGGTGTGGTGCAGATTTTGGTTCAGGAACCGGATGACCAAGAGGCAGGTAGCCTGATTCGGGAATACCTCTCCCC
CGACGGCAACCTGGAACGGTTACGCGAAACCTGTGCCGAAGTCCAGGCTACCGGCGGTAATAACTACCTGCCGTTGATCTGGAAGCATTTCAGGTCCCAT
CGCTCGCTGTTGTTCCGTCTCAGCCACCTTCTCCAACTGGAGCCCACGACTCAGGATCGGTCGCTGGTTCAGGCACTTCAACTGATACAGGACAGCGAGA
ATTTGCACCGCGTGTGGATCGACGAGCACGTCGACTTGTCGTTTGCGTCGGAGCGCTGGGTCAAGGTCGTTCGTCGTCCTGCCAGTGAGGGGCCACCGAC
CAACCGGCGCTATCTGGAAGTTTGCGTATTCTCCTACCTGGCCAACGAACTGCGATCCGGTGACATGTGCGTACAAGGGTCGGAATCCTTCGCCGACTAT
CGCAAGCAGTTGCTACCCTGGGACGAATGTCTCCAGCGACTACCAGCCTACTGCGAAAAGATGGAACTGCCTGGCACGGCGAAGGAATTTGTTACCTCCC
TCAAGACCCAGTTGGAGGAAACCGCGCAGCAACTGGATGACAAATTCCCCTCTTGCCGAGGGGACGTATCGATCAACGAAGCCGGCGAACCGGTATTGCG
CCGAGTGACGGCGCGCGACATCCCGCCATCGGCCATCTCGCTACAGACGGCCCTCATGCAACGCATGCCGGCCAGGCACGTACTCGACATCATGGCCAAC
ATCGAGCACTGGATTCAGTTCACTCGACATTTCGGGCCGATGTCCGGCAACGAGCCAAAGCTCAAAGAACCTGCCGAGCGCTACCTGATGACGATCTTCG
CCATGGGTTGCAACCTCGGCCCCAGCCAGGCCGCGCGGCATCTGGCCGGTAATGTCACCCCCCACATGCTTTCCTATACCAATCGCCGTCACCTCTCGCT
GGAGAAACTGGACAAGGCTAACCGCGAGCTGGTGGAGCTCTACCTGCAGCTCGATCTGCCCAAACTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGC
ACCCAGTTCGACTTCTATGACGACAACCTGCTGGCCGGCTACCACTTCCGCTACCGCAAGATGGGAGCCGTTGCCTATCGGCATGTGGCCAACAACTACA
TCGCTGTATTCCAGCACTTCATCCCCCCGGGCATCTGGGAGGCAATTTATGTAATCGAGGGGCTGCTCAAGGCCGATCTCAGCGTCGAAGCTGATACGGT
GTATTCCGATACCCAGGGCCAGTCGGCCACGGTGTTCGCCTTCACTCATCTGCTTGGTATCAACCTGATGCCACGCATCCGCAATTGGCGCGACCTGGTG
ATGTGCCGGCCGGATCGCGGCGCTGCGTATAAGCATATCAACCGCCTGTTCACCGACACCGCCGACTGGCACCTGATTGAAACCCATTGGCAGGATTTGA
TGCAGGTCGCGCTATCGATCCAGGCGGGCAAAATCTCCTCGCCTATGTTGCTGCGAAAACTCGGTTCCTACAGCCGGCGTAACAAGCTCTACCACGCGGC
ACAGGCACTGGGCAGCGTGATCCGTACGATCTTCCTGCTCACCTGGATCGGCAGTCGCGAGTTGCGCCAGGAGGTTACCGCGAACACCAACAAGATCGAG
TCCTACAACGGATTCTCCAAGTGGTTGTCCTTCGGTGGCGACGTGATCGCCGAGAACGATCCGGACGAGCAACAGAAGCGACTGCGCTACAACGACATGG
TGGCCTCGTCGGTGATCCTGCAGAACACTGTGGACATGATGCGGATCCTGCAGAAATTGGCCCGCGAGGGCTGGCAGTTCACCGATGAAGATGTGTCCTT
CCTCAGCCCCTACTTGACCAGCAACGTCAAGCGTTTCGGCGAGTTCAACCTCAAGCTCAACCGGCCGCCGGAGCCCTGGATCAAAGACTCGGTGTTCCAG
CAGGCAGCCGGGTCCATCCGCACTGGCAAGCTCGGTACTGCGGAAACCGAGGAGATGACCTGATGAATATTCCTCCTGCGTCATTTCGCGTCACGCCCTA
CGGCGAGGTAGATGCCGAGGCGCTGGAGCGTTTGCATGACGACTACGACACCATCCAGTTGCTGCGTCTAGTCGATGGGCTGGATCTGCTGCTGAAGGAA
ATGAACAACATCGGCGGCCTCAGGGATGGCCTCCTGCGGGTACATGCCATGGCGAAAACGGTGCTCGATGGTGCGGCACTATCGGTGTCTGTGACGGAAG
GCGGCAGTATCTGGGAGGAAGCCGAGTCGCTTGATGAGGATCTGGTGGAACTGGGCAATTGGCTGGCCAGTGTCAGAGTTCAACTGAAACCCTTGATCGA
ACTCATGCCGGTCGATCCTCATTAACCAGCTAGTCGCCAGCGACACCGAGCAAGCTACTGACTTCTGAACGGCTCGACAATCTGACCCACATAGCCTGTC
GGATAGTCCCGGTCACGCAGTCCTACTTCGGCGCTGCTGGGCTTGCTTGCGCTGTCATAGAAGGTTCCAAGCAGTTGATCCCACACCAGCAAGAACTCAC
CAAAATTGACCTGCGCATCCTCGAAGTCGCGTTTGTGATGCCAGCGGTGTGTTTCTGCAACGCCGATGACGCGCCGTAGCCAGCCCAACGAGTAGTCCAG
ATTTGAGTGCTGGAAGGCCAAATGTACCGTCAGGATGCCGAACCAGGTGGCCACGAGTGCAGAAGGAGTGCCCATCGCAAAGAGCACGAGCAGCCCAGGC
CCTGCCATGATGGCGGCATGCAACGGGTGCCGGCGCTCGCCGTTCATCCAGTAGAGCCGCTCAGCGCTATGATGTGGCTCATGCAAGCGCCACAGCCATG
GAACCTGATGGCTGAAGCGGTGCATGGCGTACAAGCTAAGGTCCAGCACGGCGGCGACAATGACTAGCTGAGCTCACAGCGGTAACTCTGTTGGGAAGAC
ACGGAACTCTGCGGGCACCCAATCGCCCAGCCGGGCCAGCACGGTCGCCGTAATCTGGATCACGGACAGGTTCACGACCATATGGATGATATCAGTAAGG
GTATCCTGGTGGTCCTCCAACCAGTCGTCACGGAACGGCTGCACGCGTTCCAGCAGCGCCACCAGCAGAATCCCTAGGGCGGCAATGATCGGCGTGCTGG
GCCAATACGGAATACCCGTGTAGAGCAACCAGATCATCCAAGCTGCGGCCCCGCCAAAGATTGTTGGGTAGCTGAGCCAGCGGATCATGAACCTGAGTGA
ATTGCCCATCGTGAAGCCCTCCCTGAGATGACTCCACTTTGTGCCAATCACCTGTGATGGCGCTTGAACAGAAAAGCTGAATTCAGCCTTTCAGACTGAC
ATGACCCAAGGCAGATGAGGGGTCGAGGCCAAACAGGTCGCGGAAGGTGCGGGAAAAGTGGGCAGCGTCAGCGAAGCCGGCAGCGTGGGCGGCCGCAGTC
AGGTTGGCGCCGCTGGCGATATGCTGGAGCGCTATGACCAGGCGATTCCATTTCCGGTAGCTGCGCAGCGGCAGACCGGTCTGTTCGACGAACCAATGTG
AGAATCGGGTAGGCGACAGATGAACGCGCTTGGCCAACGCCTGCCTGCCATTAATCGGCTCTTTTAACGCAGCGAGGACCGACTGCAGTCGCGGATCGGA
GGCCGGCGGAGTCGTAAGGTTGAGAACAAGGCGCACCATTTCCCGAATTTGCTGGGCTGACGGATCGGAGCTGCTCAGCAATTTTCGCAGCGATGCTGTA
TCGCCCATCTGAATCGGAGTGATGCCCTCCCCGATGTTATCGGGAAGTGCTCGCGCCTCATCGGACAGCGCGTCGAGGTAGATCGACAACACTTCGTCAG
CTTCGATCTGATGGGCCACCCCTGCCCTGATGCAGATGGCCCTTGCCGTCACCGACGAGGATGTACACTTCACAGTCAAGCTGCCGTTCAAGCTGACGGT
AATTTGATGCGCCATGTGGCTATGCCAATCTTGGCTACCCGCCTGCCCCAGAAAAATGCCCAGCCCGGGTGAAATCCAGGCTCTGCCATGCCAGCCGATA
CCCTGCGTTGCGTTCATTCAGCGGCACCTCAGGGTTCCACATCCCGCTGCATTTTGTGCACTAATGAGCTTTATAGCTAATTGTGGAGTGATTATAGAAT
CCTCTTTGGCCTGAACTCTATCGCTTGCTCGATTGAAATCTCACCCGCTACAAAATCAGCTCGCCCTGTGAGACTAGACACTCTATTTGATCCAAATCAA
CGAAGTGCTGTTATCGTCAAAAGGAGCATTCATGGCTCGGGGGCAATCTGCTATCGTCGGCCTATTGCCCCGACTGGTGAATTGCTGTGCGTCGGATTGG
ATTGATCCTGCTAATGATTGCTAGCCTCGTGCTGCCGACCTTCGGCGGTGTGGCTTTCAGCATGCCGGCACAACCTTGCCCGATGCAGAGCGCCGATCAT
CAGGGCCATGCAATGGCCGATGCTCCGTGCTGCGAGCAAATGGACACGTCTGATGGGGTGGCCAATAAGTCCCCCTGCAAATCCGGCCAGGAATGCAAGA
CCGGAGGACTTCTCCAGACCACCGTGATCAAGAGCATATCCCCTCTCCCCTCACGCCCCGAGATATTGCTGACCCAGTCGGTGATTAAGCGAGAGCCCGC
AGGACTCTGGCGCCCTCCTCGTTTCGTCTAATGCCGTGATCATTCCGCGCCTTACAGTCAGGCGCATCGTCGCGACCACGTTTCGTAGCTGCGACCTCGA
TCAATCGCATTGGAGGCGAAAGCATGTCCGCTTTCCTTTTTCCACGCCGTGGCTATCTCGGCGTGTTGGCTGCCGCATTCTGGGCAGCTCCCTGGCTTGC
CGCGCAGGCACAGCCCCTAACCTTCGAACGAGCCCAAGCTCTGGCCGAACAGAGTGCCCCTGAGAACCTCGCGCGCCAGGCGCAGGTGGCATCGGCACAG
CAGGCTGTAGGGCCCGCAGACGCCTTGCCCGATCCCAAGCTGATTATAGGCATCGACAACCTGCCGATCGAAGGCCCTGACCGTTACACACTTAATCGTG
ACTCCATGACCATGCGCCGCATTGGACTCATGCAGGAGGTACCAAACGGCGACAAGCGTCTGGCCCGTCGCCAACTGGCCGAAGCCTCCATGACGCGGGC
CGAGGCCGAGCAGCGTGCCATGCAGTTGGAAATCAAGCGCCAGACGGCAGTGAGCTGGCTGGACGTATACTACGCCGAACGCAGTGTTGGCCTCTTCGAT
CAACTGGACCGTCAGATCGAGATGCTCCGCTCGACCGTGCAATCGCTGATTGCCGGCGGTAGTGCTCAGCCTGGCGAGCTGTTGCAGGCCGACCAGGAAG
CTTTGGCGTTACAAGATCGGCGAGATGAACTGAATCGCGATGTGGCAGTAGCTCGTGCCAAGCTGCGCCGCTGGATAGGCAACGAGGCTGACCAGCCTTT
GCAAGGAGATGTTCCCAATCTGAACCTGGTGGCACCGCACCTGCAGCAACGCATTGCCTCACACCCTGAGTTGCGCGCTGCCTCCGCCCGAGTCGGCGAG
GCTAGCGCCGAGCTGAACGAGGCCATCGCCGAGAAGACCCCCGACTGGGGTGTTGAGTTTGCCTACAACAATCGCGACAACCAGTTCGGCGATATGGTGA
TGGTGCAATTCACGTTCGACCTGCCGTTGTTCGTAGGCACACGTCAGGGGCCCAAGATCAACGCCAGACAACAAAGCGTGTCGCAGATGGAAGCCGAGCA
GGAAGCATTACTGCGCGCCCATCAGGCTGAGCTGGAAGGCGGTATTGCCGAGCTTGAGCAACTGCGCAGGACCTTGTCACGCACCGAAAAAACCTTGATC
CCGCTTGCAAGCAAACGTGCCGATCTCGAACTGGCCGCCTACCAAGCCGGTAACAGCCAGCTCACATCCGTTATTACTGCCCAGCGCGACCTGATTGATG
CGCAACTGCGGCAGATTGAACAGCAGCGCAAGTTGAGCCAGCTCTCCGCAAGCCTGTACTACGCCTATGTGGAGGGCCTGAAATGAAGATATCGACATTT
GGTTTTGCGGTCGCCGTGCTGACCGTGGGCATTGGCGCGGCGGGCGGTGGCTACTGGCTGGCCCAGCGGCAAGCCAAACACGAGCTACTGCCTAGCTCCG
CACCGACGGACGAGCGCAAGGTGCTCTATTGGTACGACCCGATGCAGCCTGAGCAGCGCTTCGATAAACCGGGCAAGTCACCTTTCATGGATATGGAGCT
TGTCCCTAAATACGCAGGATCCGAGCAAGATCCGTCTGTCCTGAGCGTCCCCGCTCAAGCCGTGCAGAACCTCGGAATGCGAACCTCGACGGTGATCCGC
GGTGTACTGCCCTCGGATATCGAGGTGGTCGGCTCCCTGGCCTATAACCAGCGAGAGGTAGCGAACCTCCAGGCCCGCGCTGGCGGATTCGTCGAGCGGG
TTTACGGGCGTGCCCCTGGCGATGTACTGCCAGCTGGAACACCCCTGGTCGACCTGCTGATTCCCGAGTGGTCCGCCGCGCAGTTGGAGTTCCTCGCGGT
ACTGCGTACCGGTGACGCCCGCTTGATCACTGCGGCCCAAGAGCGCCTCCGCCTGCTCGGCATGCCACAAGCGTTGATAGAGCAGGTTCGCCGCAGCGGC
AAACCGCGGGCAGTGCAAACCCTCACCACACCTATCAGCGGCGAGCTCCAAGCCTTGCAGGTACGCGCCGGGATGACCGTTGAAGCCGGGCAGGATCTGG
CGTTGATCAACGGGCTGTCCAGTGTCTGGCTCGATGCGGCGATACCCGAGGCCATGGCCGGAAGTATCCAGGTCGGGGACGAGATCCGCGCCAACCTGAC
GGCCTTTCCTGATCGACCGCTGCTGGGCCGCGTCATAGCCTTGCTGCCGAGTGCCGATCCGCAAACGCGCACGCTCACGGTACGCAGCGAGCTACCCAAC
CCTGCCGGTAAGTTGCGCCCCGGCATGTTCGCCGCCGTACGCCTGAACAGTGCCGTCGAACAATCCACGCTTCTTGTGCCGAGTGAAGCCGTGATTCGCA
CCGGCAAGCGTGCATTGGTGATGCTGGCCGAAGGCGACGGACGCTACCGCCCCCAGGAAATCACCTTGGGCCGCGAGGCCGATGGGCGTCTGGAGGTGTT
GTCCGGTCTCGAGGAAGGTCAGGCGGTCGTTACCTCCGGCCAGTTCCTCATCGATTCGGAAGCCAGCCTGCAGGGCATCCTGGCCGGCAATGCAGAACAG
GACAGCACGGAGGGGCTGCATGTGTCTCACGGTGTGATTCGTGCTCTGGACGCGGAGTCAGTCACCCTGGAGCACGGGCCCTTCGAGAGCCTGAATATGC
CAGGTATGACCATGGCTTTTCCATTGGTCAGCTCAGAAGTAGCTGTGGGACTTAAGCCAGGAGATCACGTACGTATCGGCGCCCGCCAGAAAAACTCCGG
CCTGATGATCGAGCAGCTCAGCAAGGAAGGAGACCAGCCATGATCGCACGCCTGATCCACTGGTCTATCGGCAATCGCTTTCTGGTGCTGCTGGCGACCC
TGTTCATCACCGCCCTGGGCATCTGGTCGCTGCGCAACACGCCGTTGGATGCACTGCCGGACCTATCTGACACCCAGGTCATCATCAGAACCAGCTTTCC
CGGACAGGCACCGCAGATCGTCGAGAACCAGGTGACCTACCCACTGGCCACAACCATGCTCTCGGTACCGGGGGCGAAGACGGTGCGCGGCTACTCGTTC
TTCGGCGACTCCTTCGTCTACGTGCTGTTCGAGGACGACACCGACCTCTACTGGGCGCGCTCGCGGGTGCTGGAGTACCTCAACCAGGCGCAGGAACGCC
TGCCCGAGGGTGTTACCACCACCCTTGGGCCGGATGCCACCGGCGTGGGCTGGATCTACCAGTACGCCTTGGTCGACCGCAGCGGCCAGCATGATCTTGC
CCAGCTGCGGGCACTGCAGGACTGGTTCCTCAAGTACGAACTCAAGAGCCTGCCCAACGTAGCCGAAGTGGCCACCCTCGGCGGCATGGTCAAGCAATAC
CAAGTGCTGCTCGATCCGCAGAAGCTGGTGGCTTATGGGGTAACTCAGCAGGAGGTCGAAGCGGCGCTGAAGAGCGCCAATCAGGAAACCGGCGGCGCCA
TCCTGGAGCTGGCAGAGCGCGAGTACATGGTGCGGGCTTCAGGCTATCTAGAGAGCCTGGCGGATTTCCGCAATGTGCCGCTGCGGGCTTCGGCCAGCGG
AGTTCCGGTGCTGCTGGGTCAGGTGGCCACCATTCAGCTGGGGCCAGAGATGCGTCGTGGCATTGCCGAGCTGGATGGCCAGGGTGAAGTGGTAGGCGGC
GTGGTCATCTTGCGCTCCGGAAAGAATGCCCGCGATGCCATCGCCGCGGTGAAGACCAAGCTGGACAGCCTGAAGGGCAGCTTGCCGGCCGGCGTCGAGG
TGGTCACCACCTATGACCGTTCGCAATTGATCGACCGCGCCATCGATAACCTCAGCTACAAGCTGCTGGAAGAGTTCGCGGTGGTTGCCCTGGTTTGCCT
GATCTTCCTCTGGCACCTGCGCTCGTCGCTGGTCGCGATCATCACCCTGCCCCTGGGCATCCTGATGGCCTTCATCGTCATGCGCTACCAGGGCGTCAAT
GCCAACATCATGTCGCTGGGCGGGATCGCAATCGCCATCGGCGCCATGGTCGATGCCGCCGTGGTGATGATCGAGAACGCGCACAAGCACATCGAGGCCT
GGAAGGCTCGACACCCCGGTGAACCGCTTCAGGGCGAGGCGCACTGGCGGGTGATCGGCGAAGCTGCGGCCGAGGTCGGGCCGGCGCTGTTCTTCAGCCT
TTTGATCATCACCCTGTCTTTCCTCCCGGTCTTCACCCTGGAGGCCCAGGAGGGTCGCCTGTTTGGCCCGCTGGCATTCACCAAGACCTATGCCATGGCT
GCCGCTGCTGGCCTCTCGATCACCTTGGTACCGGTGCTGATGGGCTACTGGATTCGTGGGCATATCCCCAGCGAACAACAGAACCCCTTGAATCGTTGGC
TGATCGGTGCATACCGGCCGGTGCTGGAGTGGGTGCTGGCTTGGCCTAAGGTGACCCTAGCGCTGGCCTTGCTAGTGTTTTTGTCCAGTCTCTGGCCCCT
CAGCAGACTCGGAGGAGAGTTTCTGCCGCCGATGGACGAGGGCGACTTGTTGTACATGCCATCAGCCCTGCCCGGCTTGCCGGCCAGCAAGGCCACCCAG
CTGCTGCAGCAAACCAACCGGATGATCCTCACGGTGCCCGAAGTGGCACGGGTATTCGGCAAGGCCGGGCGAGCAGAGACCGCCACCGATCCAGCACCGC
TGGAAATGTTCGAGACCACGGTGCAGTTCAAACCACGCGATCAATGGCGCGCGGGGATGACACCCGAAAAGCTGATCGAGGAACTGGATCGCGCGGTAAA
AGTTCCGGGGCTGTCCAATATCTGGGTGCCGCCCATCCGCAACCGCATCGACATGCTGGCGACGGGGATCAAGAGCCCCATTGGGGTGAAAGTGTCCGGA
ACCTCCTTGGTCGACATCGAGCGCATAACGCGCGATATCGAGGCCGTGGCCAAAGAGGTGCCTGGGGTGAGTTCGGCCTTGGCAGAACGCCTTACTGGCG
GCCGTTACGTGGACATCCAGATCGATCGACTGGCCGCGGCGCGCTATGGCCTGAGCATCGCCGATGTGCAGGCGGTGGTATCGGGCGCCATCGGCGGCAG
CAATATTGGTGAGACGGTTGAAGGACTGGCCCGCTTCCCGATCAACCTGCGCTATCCCAAGGAGTGGCGAGATAGTCCGCAGGCACTACGGCGTATGCCG
ATCCTCACGCAAGCCGGCCAGCAGATCACCTTGGGCACCGTCGCCCAGGTTAGTCTGACCGAAGGGCCACCAATGCTGCGCAGCGAGAACGGGCGTCTGT
CCGGTTGGGTGTATGTCGATGTACGTGGGCGCGACCTGGCATCGACCGTGCGCGAGTTGCAGCAACGCGTCGCCGAGCGGGTACAACTCGACGCCGGCAT
GACCGTCTCCTACTCCGGTCAGTTCGAATTCCTCGAGCGCGCCAATGCGCGGCTGGCCTGGGTGGTGCCGGCGACTCTGTTGATTATCTTCGTGCTGCTC
TACCTGACTTTCAGCCGCTTCGGCGAGGCCCTGCTGATCATGGCCACCCTGCCCTTTGCCCTGTCGGGCGGCATCTGGCTGCTCTACTGGTTCGGCTTCA
ACCTGTCGGTGGCCACCGGCGTGGGCTTCATCGCCCTGGCCGGCGTCTCGGCCGAGTTCGGGGTGATCATGCTGCTGTACCTGAAGAACGCCTGGCATGC
GCGTGTGGATACCGGGCGCAGCGGTGATCCGGCCCTACTGGAGGCAATTCGTGAAGGCGCGGTGCTGCGTGTGCGGCCCAAGGTGATGACGGTGGCCGTG
ATCATCGCCGGCCTGTTGCCAATCCTCTGGGGCGGAGGTGCCGGATCTGAGGTGATGAAGCGCATCGCCGCGCCCATGGTCGGCGGCATGATTACCGCGC
CGCTGATGTCCATGTTGGTTTTGCCGGCCGCGTACTGGCTGATGCGAAGGCAGCGTACACAGAAGGTTCGCGCACCGCAGGAGCTATAGCTTTACAAACC
CGGGCAAGCCACGCGCCAAGCTGACTCGCCCGGGTAACGCGGCAGGAAGCATTACGGCGATGTAACTTTGACTTCATTTTTATGACAGGTTGAGCGGATA
TATTTTAATCACCACCTTGAAGGAGTGATTAAACATGAAAAGCCTCAAAGTTATTGCAGCCCTTGCCGCTATGGTTGTTTCCTCTGCCACTCTGGCAGAA
GGCGGCGCTGATCGTGTTTATGGTCGGATGATTCAGGCCAATGAGCAGGCCATGCAAGAGTATGCTGCCGCTAACGGAAAGAATCCGCCTGAAGTTATTC
ATTACCGCTACGGCATGAAACTCGATATCGCCAGGGTCGTGGCCACTACCCCGACGGACTCTAGCTGCGGTGTGATAAAGACATAGCGAACTGGAACCTG
TGTGCTCAGCCCTAATTTATTCGCGGCACGAGCCCCGTGGTCGACCAGCACTTCACCCAGCGCATTAGCCAGCGAGTGGACAACCTTCTCCGGTGCCGGC
GGGCGCACGCCGAACCGAGTTTCGACTGCGGCAACATAAATGCCCCGAGCAACGCGAAACAGCTTTCCACCTTCGACCAGGCGAGAGAGTCCTCGCTGCA
CAGCATGGCGAGAACCATGATGCAGGAATCTGCTAGGTGTCAGAACCCCACCTTCTGGAAGCTGTTGAATGATGTCCAGGATTTTCTCGGGAAGAGCCTT
CATTGTCCTGTCAAACCTCGTGAGTGGCCCTGCCAAGAACCACCAGAGGTGGCGACCATCTCATGCGGGACACATCATCGAACAATAGACCTGGTGCTTG
GCTCCGTCCTGTGAGTACAGGCAATCTCTGTGCGAGTAGGTCTGGCCTGATGCCGTTTTGAAGTCGTAGCCCAAGACTCGTTCGTCCCGGTCATAGACCC
TTATCAGCTCGGTCAGCTTCTCCATCGTCCAGTCATTGGATCCATTCAGCCTCGCAGGCAGTACAACCTGGACTGCCTCGACCAGCGTTCCCTCAGCGCG
TCTTTGTAGCATGAACACTTGACCATTTCACTCAACGCGGGCGAATGGGAAGAGAAAAAACTAACGCCTTACCAGGTGGTCGTCCTTTGGAGCGAGTGGT
CAGCAGCTGCCCGCGGGCGACTGAAAAATGAGCTGGAAATAGCCCGGCAAGAGAACATAAAAGCCAAAAAAGACAAGCAGGCATCCCGCAGTTACCTCTT
CTTTGTGGGTGCCCAGGATGCCAAGAACCCTGCGATTTTCCATGTGCTGGATCATCGACTCATTTGCACCGCACATGACGAGCTGGTGTTCCCAGTGCGC
AGCTAGGTGCAGATCGGGGCCGCGGAAGGCGGTCTTATGGCAGTCCCCTCGGGCCAGTTTGAGATGTGTTGTAGCGCACTCAACTGCCCAGGGAACACTC
CTGTGCTCTCCACATAGCGCAATGCGGATTGGCCATCGCTCCAACCTACGTACTGCATCAGCGCTTTGAGATCCCAGCCGCTGCGGGTGGCCCAGGTGGC
AAACCCGCGGCGTAGCGAGTGGCTACTGTACAGCTCCGAAGGCAGTCCTGCCGCCTGCAGTACGGCGCGCATGAGTGGGACAATGCTATTTGGGTGCAAA
CCCTGCTCACTTAAATGCCCCCAGCGATCAATTCCACGGAATACCGGCCCACGCGCGATGCCCGCCACGCTGATCCAGTCGACGTAGGCTTGTACTGGAC
ATAACCTGGCCAACGCCGGCGCGCTGAAGGTCTGGCCTTGGTTGTCGCGGTCACCTTTGCTCCAGGGCAGAAACAGCTGCATGCCCTCCCCCGGCCTTAC
CTGGATGTGCTCGACCTGCAGACGGCACAGCTCATCGCTGCGGAACGCCCGCCAGAAGCCAATCAGCATCAACGCACGGTCGCGGCAACAGCGCAGCAAC
CGCGGCCAGTCGTCCTCCGCTCGTGCTCTCCCCTCGGCCTGTTCCAACCACAGCACGCACTGTTCGAGTTGGCGCAATTGCAACGGCTCGGCCTGCTTCT
CCTGGCGCGGGTGCAGAGTACGGATTCCCTTGAGGATCTGGCGAACCAGTGGGGTCTTGGTCGGATCGGGGAAGCCTTGGCTGACGTGCCACTGCGCCAG
TGCCGCCAGGCGCAGCTTGAGAGTGTTACTGGACAGCATGGCGGCGTGATCGACCAGGTAGCGCACGATGGCATCGCTGGTTGCCGGCAGAAAGCCGCCC
CAGGTCACTTCGAAGTGCTCGAGCGCCTGTTGGTAGCTGCGCCGCGTGCTAGCGCGGGTGCCGGCCTGCAGGTACCGCTCGATCTCCTGGCTCATCTGGG
CGTATCCCCTTGGTGTACCGGTGAGCGACGACTAAACGACAAAAATGCCGCCTCACCTTGGATAATTCATGATTACCCAATTCTAGATTATTGGTAGAAA
ATAAGGGAAATTCTTGATAAAGTGCTATGTATCTACATGGTATGTACCACAGAACGAAATCGTTAGGAGGCTCCGTCATGGCCCGTGGTGGAATCAACAA
AGCTGTCGTGCAGAAAGCCAGGCATGCCCTCCTCGCCCGCGGCGCCCACCCCAGTATTGATGCGGTGCGCATCGAGCTGGGCAACACCGGTTCAAAGACC
ACCATTCACCGCTACCTGAAAGAGCTCGAAGACGCCGAGCGCGGCCGGGATGCGGCTTCGATCCCGCTCAGCGAACAGCTGGCCAATCTGGTCAGCCAAC
TGGCAGATCAGCTAGAGGAGGAGGCGCAGGCCGCGGTGGCCCTGGAGCGCGAACAACTGACCCGCGAACGGCTCGATTACCAGCATCGGTTTCGACAGGC
CGAAAGCCGCATCCAACAACTGGAAGGCCAGACCGCGCTCGACGCGGAACGGCTTCAGACCACTCATCACGAGTTGCAGCAGGCACGCGAGCAACGGCAA
CAGGCCGAGATCGAGAACGCCCGCCTACAGCAGGCTAATCGTGACCTCGAGGAGCGGCACAAGGATCGCGACGCACAGATCCACTCGCTGGAGGAAAAAC
ACCGACATGCGCGCGACACCCTGGAGCACTACCGACAGGCCAGCAAGGAACAGCGTGAGCAGGAACAACGCCGACACGAGTCGCAGGTACAACAACTGCA
ACTAGAACTGCGGCAACTGCAGCAGACCTTGATAATCAAGCAGGACGAGCTGACGCAACTGAACCGCGACAATGCACGCTTGCTCACCGAGGCGCGGCAG
TTGCAAAAAGAGCGACATGCACAGCAACAGCTAGTGGCGCAGAAAACTCAGGCCCTGGAGGCTCTGCAGAGCACGCTGGCCGGCTCCGAACGCACGAATG
AAGCCCTTGATCAGCGTTGTCGCACATTGCAGGAGGAGGTGTCCCGGCTGAGCGAAGCCTCCGCGCTTCAGGCGCAGCAGACGCAGGGCCTGCAGAAGCG
CTTGGTCGAAGCCACTACACAGCTGAAGCTACTCGGGGCACCGCTTGCGAACAGCGATGGCGCATGTAGCACATGAACCGGCACACTGAGCCTATGCGCT
GAGCGGAGGTGAAGATGACACTACTTGAGACTACCAATGAGGGGGCTGCGGAACCTGTCCGTTTGACTACGCCACTGGGCCAGGCCATTGGTAATCTGTT
CGCCCGGGCCTTGCCGCTACTGGATGGCAATCCGCCAGGCTCGCTCAAAGTCTTCGTCTTCGGCGGCTGCGCGGTGCACCTGCTCACCCATGCGCGTGGT
AGTGCGGACATCGATGCGGAGATCGAGGCGGCCCGCGTGCTGCGTAAGGACGAGATCATGGCCGTCTACACACCGCCAGAGGGTTATGAGGACGGCGACG
GCCGCGACTTGCAGGTGTACCTGGACCAGAACTACACCAATGCCCTCGGGCCACTGCACGAGGACTACCGCGAGCGCGCCATCCCGATGGAGGGTTTCGA
GGGTGAGCAGCCGCTGCATATCTTCGTTGCCGCCGGCGTGGATCTGGCCATCTCCAAGCTCGGCCGCTTTACGGAAAACGATCAATATGATATCGAACAG
CTCATCGAATGTGGCCGTGTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGCGCAATGCTAGGCTGCC
TGAAACTGGTCATAGCGAAGTACCTGGAGGATGGGCGAGATGCCACGTCTGGATCGTAAACAAAGCTTTGGCACGCTCCTGGAGACTGTCACCCAGCAGC
GTCTTAGCCAAGTTGCGTCCGATGCTCTTGTGGAGCTTGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCAGTACTGCAGCGTGAAGTGGCAAG
CAAGCTGCGCGAGCCTGAACAGAAGCTGCGTGCCCTCTATCTCGTCGACCTGCTGCGTCGCTTTCCCTGTGTATCAACGGACAAAGCCGCGCGCCTAAAA
GGCTTTGTCAGCAGTTGGTCGAACCTGAAACCAGCAGAACGCTCACCTCGTGCGACCCAGCTTGTCTCTCGCTACCAACTCGACAAGCTGGCCTATGAAT
GGGGGCTTGAAGAGGACGTCAGCAAGCAGATGCAGGATGTCCTGGCTTTCCAAACCCGCCATTACGCCGCCACCCAGGGCGTGAAGACGGGCTATTCAGA
GCCAACGCCCGTAAGCTAGCAGCAGGGCACGGCAAAATGGACGCGGAATGGCCAACTCAACAAATGACGACCAACGACTCGCTGATCTAACACGCGAGGC
ATTAGCCGACGTGAGCGAGGGTTTGGTGATCGATCACGCATTGGTCGAGACCTGGGCTCAGAGCCTTGATACCGACACCCCGGTGCCTTTGCCAACTCCA
GATCGGCCTACTTAATTCGCAGCAGGCCGAACTGATCCTCAGCGGTATCAGGCTGAAGCCATTGCGCTAAGCGCGCCTTCGCTTGAGCAGGACTTCCATT
CTGTTCGTTTAAATACAGCAAGTTACAGAACGAATGCACTAATTTTTGCCTCATCTCGGCATACCCCTGATTCCCCCCTTACCTCGGCATAACTTCAATC
AGGCGTTCAGAGCCGATTCTATAATTGACTATAAAATCCTATAAAGCCCATCCTGAGTAACTTAGCGACGCTAGAAAGATATTTAAATACAATCAGTTGC
AGCGCGTATGTCCTAATTTTCCTTTATCTCGGCATGACCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
3018 bp1005 aa1463163+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAALERTAYPRLATTLSAKDLHRNYSLSSGELDWISRTARSPALSLGLAVQLKVFQELHYFPPLDEIPPEITDHIRNTLGFGPRITSRYTNSRTFYRHQA
AIREYLQIKAFYGSEALTIALHLAHESAEVLDQRADIINVLIGELLQRSYELPAYSTLNDAAEDALVAMQERLFNLVVTRAPIEVVYKLKELLETDFGRR
QSDFNALKQAPKKPSRKHLEVLIDHMAWLESFGNLDAIFDGIVDTKIRHFAAQAAASDVAELKDCSLPKRYTLMLALIYRMRVRTRDHLAEMFIRRISTI
HKRAKEELEQIQARQRQKLEQLAATLDGVVQILVQEPDDQEAGSLIREYLSPDGNLERLRETCAEVQATGGNNYLPLIWKHFRSHRSLLFRLSHLLQLEP
TTQDRSLVQALQLIQDSENLHRVWIDEHVDLSFASERWVKVVRRPASEGPPTNRRYLEVCVFSYLANELRSGDMCVQGSESFADYRKQLLPWDECLQRLP
AYCEKMELPGTAKEFVTSLKTQLEETAQQLDDKFPSCRGDVSINEAGEPVLRRVTARDIPPSAISLQTALMQRMPARHVLDIMANIEHWIQFTRHFGPMS
GNEPKLKEPAERYLMTIFAMGCNLGPSQAARHLAGNVTPHMLSYTNRRHLSLEKLDKANRELVELYLQLDLPKLWGDGKAVAADGTQFDFYDDNLLAGYH
FRYRKMGAVAYRHVANNYIAVFQHFIPPGIWEAIYVIEGLLKADLSVEADTVYSDTQGQSATVFAFTHLLGINLMPRIRNWRDLVMCRPDRGAAYKHINR
LFTDTADWHLIETHWQDLMQVALSIQAGKISSPMLLRKLGSYSRRNKLYHAAQALGSVIRTIFLLTWIGSRELRQEVTANTNKIESYNGFSKWLSFGGDV
IAENDPDEQQKRLRYNDMVASSVILQNTVDMMRILQKLAREGWQFTDEDVSFLSPYLTSNVKRFGEFNLKLNRPPEPWIKDSVFQQAAGSIRTGKLGTAE
TEEMT

 

Blast result :
Comments
The transposase of ISPa42 (ORF1) is 45% aa similar to ISPa38.
The others orf:
Orf2: tnpA repressor protein,
Orf3: sterol desaturase-like protein,
Orf5: arac family transcriptional regulator,
Orf7: outer membrane efflux protein,
Orf8: RND family efflux transporter MFP subunit,
Orf9: CzcA family heavy metal efflux protein,
Orf13: phage integrase family protein,
Orf14: cointegrate resolution protein T,
orfs 4/6/10/11/12/15/16: hypothetical protein
References
1] ISfinder annotation (2011)