ISPfl2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY048765 ND Pseudomonas fluorescens
Pseudomonas fluorescens
DNA section
IS Length : 1081 bp

Ends


IR Length :

IRL : CCTTTCCGGTACGGTGTTGCCCCATGTCCTATTCCGAACTCAGCGTCGAA
IRR : GGCGGTTTCAGGAGCTGAGTGCAACACGGTTATTGAATTGAAGCTGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CCTTTCCGGTACGGTGTTGCCCCATGTCCTATTCCGAACTCAGCGTCGAAGAGCGCGCCGCCATTCAACTCGGTCAAGCCCAAGGTTTCAGCCTGCGCGG
GATTGCTCGCCTGATCAACCGATCGCCCTCGACCATCAGCCGCGAGCTGAGACGCAATCAAGACGGCATTGGTGCTTACGCGGGCCCCGTAGCGCAACAA
CAGATGAGGATTCGGCGCCAAGCCTGCCGGCCCAAGCGCAAGCTGCTGCCGGGGAGTGAGCGCTTCGAGTTGGTGGTCCACATGCTGCGTGAGCGTTTGT
CTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCAAGCCTTAGAGATGCCTACGTCTGTCGCGAGACGATCTACAACGCGATCTATGCCCT
GCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAGGCAAGACGGCCCGCCGGCCGCGCTCTGGCGGTGTAGATCGGCGCGGCCAGATC
CCCGAGATGGTCAGTATCCACGTGCGCCCGCCGGAGATCGAAGACCGACTGATGCCGGGCCATTGGGAAGGCGACCTGATCAAGGGCAAGGCCAACGCCT
CGTCCGTAGGCACCTTGGTAGAGCGCACCAGTGGCTACCTGATCCTGGTGAAGATGAACGACGCGACGGCGACCTCGGCGATGGAAGGTTTCAGCGCGGC
GCTCAATCGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGGCGGGAGATGGCGCGGCACGCCGAGATCACCCAGAAGACCGGGGTGGCG
ATCTACTTCTGCGACCCGCACAGTCCTTGGCAGCGCGGCAGCAACGAAAACATCAATGGCTTGATCCGCCAGTACCTGCCCAAGGGCACAGACCTGTCGG
TACACAGCCAGGAAGAGCTGGATGCCATTGCACTGCAATTGAATATGCGCCCGCGCAAGCGCTTCGACTTCAAATGCCCGATTGAAGTCATGAGCGAGGT
GATGCAAGAAGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATAACCGTGTTGCACTCAGCTCCTGAAACCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa241052+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYSELSVEERAAIQLGQAQGFSLRGIARLINRSPSTISRELRRNQDGIGAYAGPVAQQQMRIRRQACRPKRKLLPGSERFELVVHMLRERLSPEQIAGK
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQGKTARRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLILVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQKTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMSEVMQEAMAMRHDAPASIQ

 

Blast result :
Comments
The first 31 bp are deleted in this sequence.ISPfl2 is 94% aa similar to ISPst1.
References
1] Min,K.-H. and Seol,J.-Y. (2001) Direct submission GenBank