ISPfl2
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY048765 | ND | Pseudomonas fluorescens | Pseudomonas fluorescens |
DNA section
IS Length : 1081 bp
Ends
IR Length :
IRL : CCTTTCCGGTACGGTGTTGCCCCATGTCCTATTCCGAACTCAGCGTCGAA
IRR : GGCGGTTTCAGGAGCTGAGTGCAACACGGTTATTGAATTGAAGCTGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CCTTTCCGGTACGGTGTTGCCCCATGTCCTATTCCGAACTCAGCGTCGAAGAGCGCGCCGCCATTCAACTCGGTCAAGCCCAAGGTTTCAGCCTGCGCGG
GATTGCTCGCCTGATCAACCGATCGCCCTCGACCATCAGCCGCGAGCTGAGACGCAATCAAGACGGCATTGGTGCTTACGCGGGCCCCGTAGCGCAACAA
CAGATGAGGATTCGGCGCCAAGCCTGCCGGCCCAAGCGCAAGCTGCTGCCGGGGAGTGAGCGCTTCGAGTTGGTGGTCCACATGCTGCGTGAGCGTTTGT
CTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCAAGCCTTAGAGATGCCTACGTCTGTCGCGAGACGATCTACAACGCGATCTATGCCCT
GCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAGGCAAGACGGCCCGCCGGCCGCGCTCTGGCGGTGTAGATCGGCGCGGCCAGATC
CCCGAGATGGTCAGTATCCACGTGCGCCCGCCGGAGATCGAAGACCGACTGATGCCGGGCCATTGGGAAGGCGACCTGATCAAGGGCAAGGCCAACGCCT
CGTCCGTAGGCACCTTGGTAGAGCGCACCAGTGGCTACCTGATCCTGGTGAAGATGAACGACGCGACGGCGACCTCGGCGATGGAAGGTTTCAGCGCGGC
GCTCAATCGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGGCGGGAGATGGCGCGGCACGCCGAGATCACCCAGAAGACCGGGGTGGCG
ATCTACTTCTGCGACCCGCACAGTCCTTGGCAGCGCGGCAGCAACGAAAACATCAATGGCTTGATCCGCCAGTACCTGCCCAAGGGCACAGACCTGTCGG
TACACAGCCAGGAAGAGCTGGATGCCATTGCACTGCAATTGAATATGCGCCCGCGCAAGCGCTTCGACTTCAAATGCCCGATTGAAGTCATGAGCGAGGT
GATGCAAGAAGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATAACCGTGTTGCACTCAGCTCCTGAAACCGCC
GATTGCTCGCCTGATCAACCGATCGCCCTCGACCATCAGCCGCGAGCTGAGACGCAATCAAGACGGCATTGGTGCTTACGCGGGCCCCGTAGCGCAACAA
CAGATGAGGATTCGGCGCCAAGCCTGCCGGCCCAAGCGCAAGCTGCTGCCGGGGAGTGAGCGCTTCGAGTTGGTGGTCCACATGCTGCGTGAGCGTTTGT
CTCCCGAGCAGATTGCCGGCAAGCTGCGCAGCATGAACATTCCAAGCCTTAGAGATGCCTACGTCTGTCGCGAGACGATCTACAACGCGATCTATGCCCT
GCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAGGCAAGACGGCCCGCCGGCCGCGCTCTGGCGGTGTAGATCGGCGCGGCCAGATC
CCCGAGATGGTCAGTATCCACGTGCGCCCGCCGGAGATCGAAGACCGACTGATGCCGGGCCATTGGGAAGGCGACCTGATCAAGGGCAAGGCCAACGCCT
CGTCCGTAGGCACCTTGGTAGAGCGCACCAGTGGCTACCTGATCCTGGTGAAGATGAACGACGCGACGGCGACCTCGGCGATGGAAGGTTTCAGCGCGGC
GCTCAATCGCATGCCGCTGGCGATGCGCAAGAGCATGACCTACGACCAGGGGCGGGAGATGGCGCGGCACGCCGAGATCACCCAGAAGACCGGGGTGGCG
ATCTACTTCTGCGACCCGCACAGTCCTTGGCAGCGCGGCAGCAACGAAAACATCAATGGCTTGATCCGCCAGTACCTGCCCAAGGGCACAGACCTGTCGG
TACACAGCCAGGAAGAGCTGGATGCCATTGCACTGCAATTGAATATGCGCCCGCGCAAGCGCTTCGACTTCAAATGCCCGATTGAAGTCATGAGCGAGGT
GATGCAAGAAGCCATGGCTATGCGGCATGATGCTCCAGCTTCAATTCAATAACCGTGTTGCACTCAGCTCCTGAAACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 24 | 1052 | + | No |
Chemistry : DDE
ORF sequence :
MSYSELSVEERAAIQLGQAQGFSLRGIARLINRSPSTISRELRRNQDGIGAYAGPVAQQQMRIRRQACRPKRKLLPGSERFELVVHMLRERLSPEQIAGK
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQGKTARRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLILVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQKTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMSEVMQEAMAMRHDAPASIQ
LRSMNIPSLRDAYVCRETIYNAIYALPVGELRKELIICLRQGKTARRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLILVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQKTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELD
AIALQLNMRPRKRFDFKCPIEVMSEVMQEAMAMRHDAPASIQ
Blast result :
Comments
The first 31 bp are deleted in this sequence.ISPfl2 is 94% aa similar to ISPst1.
References
1] Min,K.-H. and Seol,J.-Y. (2001) Direct submission GenBank