ISPal1
- Family IS5
- Group IS427
Isoform Synonym(s) ISp25x1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF173167 | ND | Pseudomonas alcaligenes | Pseudomonas alcaligenes NCIB 9867 |
DNA section
IS Length : 924 bp
Ends
IR Length : 15
IRL : GGCTCTGTACGTAAACCCAAGAAATACGATTTTCTGTAAAATACACCGCC
IRR : GGCTCTGTACGTAAAGTATTGTCGCAAGCACCGCATAGCGCAGGCCAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TA | NNNNNNNNNN | 2 |
DNA sequence
GGCTCTGTACGTAAACCCAAGAAATACGATTTTCTGTAAAATACACCGCCATTAAAGCCAGGAGGCCAAGATGGCAAAGCGGTATGAACTCCCCGACGCA
GCCTGGGATCTGGTTGCAGATATCTTCACCAAAAATCAGCGCACCGGGCGCCCTCGGGCCGATGATCGCCTGATGCTAAACGGTATTCTCTGGGTGCTTT
GCTCTGGCGCAGCCTGGCGAGACATGCCCGAACGATTCGGGCCCTTGGTCAACGATCTATCAACGGTTCCGGGGATGGCGTGATTGCGGAGCTTTTGATC
AGATGCTCAAGCGTCTTCATATCCGATTGAATGAGCAGGGTTTGATTGACTTGGAAACATGGATGATCGACTCCACTGCCGTACGAGCAACCCGGGCCTC
ATCAGGTGCCGGGAAAAAAGGGGATTTGAAGAACCGCAAGACCACGCGCTCGGGCGCAGCCGGGGTGGCCTGACGACCAAGATTCACATGCTGTGCGACG
CCAATGGTGTGCCTCTGCGTTTCCTGTTGTCAGGCGGACAAGCCAGCGATATAGCCTATGCCCAACCGCTACTCGATCAGGCTTGCATACCCAGCCTGCG
AGGTCGCCCACGCAAGCGTTGCCGCTGGTTGCTGGCTGACAAGGGTTACGACGCTGAAGCGCTGCGCCAGTACTGTGATCGTTATCGCATGCAGCCAGTC
ATTCCGTTGCGAAGCATGAAGCGCAAAACCAAGCCAGGATTGCCTCGACTTTTTGATCGCCCCAAATATCGGCAGCGCAACATCATCGAACGGCATGTTT
GGCTTGGCTGAAGGAGAACCGTCGCATCGTGACGCGCTTCGACAAGCTCGCAACAAGTTTTGCGGCGATGGTCTCATTGGCCTGCGCTATGCGGTGCTTG
CGACAATACTTTACGTACAGAGCC
GCCTGGGATCTGGTTGCAGATATCTTCACCAAAAATCAGCGCACCGGGCGCCCTCGGGCCGATGATCGCCTGATGCTAAACGGTATTCTCTGGGTGCTTT
GCTCTGGCGCAGCCTGGCGAGACATGCCCGAACGATTCGGGCCCTTGGTCAACGATCTATCAACGGTTCCGGGGATGGCGTGATTGCGGAGCTTTTGATC
AGATGCTCAAGCGTCTTCATATCCGATTGAATGAGCAGGGTTTGATTGACTTGGAAACATGGATGATCGACTCCACTGCCGTACGAGCAACCCGGGCCTC
ATCAGGTGCCGGGAAAAAAGGGGATTTGAAGAACCGCAAGACCACGCGCTCGGGCGCAGCCGGGGTGGCCTGACGACCAAGATTCACATGCTGTGCGACG
CCAATGGTGTGCCTCTGCGTTTCCTGTTGTCAGGCGGACAAGCCAGCGATATAGCCTATGCCCAACCGCTACTCGATCAGGCTTGCATACCCAGCCTGCG
AGGTCGCCCACGCAAGCGTTGCCGCTGGTTGCTGGCTGACAAGGGTTACGACGCTGAAGCGCTGCGCCAGTACTGTGATCGTTATCGCATGCAGCCAGTC
ATTCCGTTGCGAAGCATGAAGCGCAAAACCAAGCCAGGATTGCCTCGACTTTTTGATCGCCCCAAATATCGGCAGCGCAACATCATCGAACGGCATGTTT
GGCTTGGCTGAAGGAGAACCGTCGCATCGTGACGCGCTTCGACAAGCTCGCAACAAGTTTTGCGGCGATGGTCTCATTGGCCTGCGCTATGCGGTGCTTG
CGACAATACTTTACGTACAGAGCC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
213 bp | 70 aa | 71 | 283 | + | No |
Description : First part of the transposase
ORF sequence :
MAKRYELPDAAWDLVADIFTKNQRTGRPRADDRLMLNGILWVLCSGAAWRDMPERFGPLVNDLSTVPGMA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
451 bp | 150 aa | 359 | 809 | + | No |
Description : Second part of the transposase
ORF sequence :
MDDRLHCRTSNPGLIRCREKRGFEEPQDHALGRSRGGLTTKIHMLCDANGVPLRFLLSGGQASDIAYAQPLLDQACIPSLRGRPRKRCRWLLADKGYDAE
ALRQYCDRYRMQPVIPLRSMKRKTKPGLPRLFDRPKYRQRNIIERHVWLG
ALRQYCDRYRMQPVIPLRSMKRKTKPGLPRLFDRPKYRQRNIIERHVWLG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
739 bp | 0 aa | 71 | 809 | + | Yes |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
ISPal1 is 67% aa similar to ISSfl7 for ORF1 and 56% for ORF2.
References
1] Feng,Y.M., Yeo,C.C. and Poh,C.L. (2000) Direct submission GenBank