ISPal1

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s) ISp25x1
Accession numberTranspositionOriginHost
AF173167 ND Pseudomonas alcaligenes
Pseudomonas alcaligenes NCIB 9867
DNA section
IS Length : 924 bp

Ends


IR Length : 15

IRL : GGCTCTGTACGTAAACCCAAGAAATACGATTTTCTGTAAAATACACCGCC
IRR : GGCTCTGTACGTAAAGTATTGTCGCAAGCACCGCATAGCGCAGGCCAATG

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTANNNNNNNNNN2

DNA sequence

GGCTCTGTACGTAAACCCAAGAAATACGATTTTCTGTAAAATACACCGCCATTAAAGCCAGGAGGCCAAGATGGCAAAGCGGTATGAACTCCCCGACGCA
GCCTGGGATCTGGTTGCAGATATCTTCACCAAAAATCAGCGCACCGGGCGCCCTCGGGCCGATGATCGCCTGATGCTAAACGGTATTCTCTGGGTGCTTT
GCTCTGGCGCAGCCTGGCGAGACATGCCCGAACGATTCGGGCCCTTGGTCAACGATCTATCAACGGTTCCGGGGATGGCGTGATTGCGGAGCTTTTGATC
AGATGCTCAAGCGTCTTCATATCCGATTGAATGAGCAGGGTTTGATTGACTTGGAAACATGGATGATCGACTCCACTGCCGTACGAGCAACCCGGGCCTC
ATCAGGTGCCGGGAAAAAAGGGGATTTGAAGAACCGCAAGACCACGCGCTCGGGCGCAGCCGGGGTGGCCTGACGACCAAGATTCACATGCTGTGCGACG
CCAATGGTGTGCCTCTGCGTTTCCTGTTGTCAGGCGGACAAGCCAGCGATATAGCCTATGCCCAACCGCTACTCGATCAGGCTTGCATACCCAGCCTGCG
AGGTCGCCCACGCAAGCGTTGCCGCTGGTTGCTGGCTGACAAGGGTTACGACGCTGAAGCGCTGCGCCAGTACTGTGATCGTTATCGCATGCAGCCAGTC
ATTCCGTTGCGAAGCATGAAGCGCAAAACCAAGCCAGGATTGCCTCGACTTTTTGATCGCCCCAAATATCGGCAGCGCAACATCATCGAACGGCATGTTT
GGCTTGGCTGAAGGAGAACCGTCGCATCGTGACGCGCTTCGACAAGCTCGCAACAAGTTTTGCGGCGATGGTCTCATTGGCCTGCGCTATGCGGTGCTTG
CGACAATACTTTACGTACAGAGCC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
213 bp70 aa71283+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MAKRYELPDAAWDLVADIFTKNQRTGRPRADDRLMLNGILWVLCSGAAWRDMPERFGPLVNDLSTVPGMA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
451 bp150 aa359809+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

MDDRLHCRTSNPGLIRCREKRGFEEPQDHALGRSRGGLTTKIHMLCDANGVPLRFLLSGGQASDIAYAQPLLDQACIPSLRGRPRKRCRWLLADKGYDAE
ALRQYCDRYRMQPVIPLRSMKRKTKPGLPRLFDRPKYRQRNIIERHVWLG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
739 bp0 aa71809+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
ISPal1 is 67% aa similar to ISSfl7 for ORF1 and 56% for ORF2.
References
1] Feng,Y.M., Yeo,C.C. and Poh,C.L. (2000) Direct submission GenBank