ISPa4

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS-PA-4
Accession numberTranspositionOriginHost
U16785 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa PAO-muc
DNA section
IS Length : 2564 bp

Ends


IR Length : 0

IRL : TGCGGGGCTTTCCTTTGTCAAGAAAAAATGTTCCGATAAGCTATGCTAGG
IRR : GGTAGTGGGATGAAGCGGTGTGGATGGAGATATGGGATTGGTGATAGGCA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGCGGGGCTTTCCTTTGTCAAGAAAAAATGTTCCGATAAGCTATGCTAGGTTGACGATATAACGAAACCACTGATCTAGAGCCAGTCAGTAAGGGATTAA
ATATGGCAAACAAGACTGACAATCTTCCAGACTTCCTTCAGGACTACGCATCTCTTTTTAGTCATTTCCAAGGCCAGATGGATGGTTTAACAACCGTTCA
AATTGGAGATAAATTTGCCTCTTTAGCAGAACATTTGATTCCTCATACCGAGGCAGGCTCAGACTTTGAAAGAGCAACAAAGTCAAAAAAGAGCTGGGAC
AAAGGTGTAGACCTAATATTTCAACACAAAGAAATTAACGGCGTAGAGCTAAGAGTACAGTCAAAATACACCATTTCGTCAGTAGATGATGTAGACTTAA
TTATAAGCAAATTCCAAGAGTACGACTCAAAAGATGCAACCAACAAACAACACGAACTAGACCTACTAGGATCATTAGAAGAAGATAGTCGACAGACAAG
CAAATACCTGATAATAACCTCCTCGAAAATATCAAACATAATAGCAAAGTTCTTAGAGAGCCAACGTCCATCAAGATTTTTCCTTGAGAGAATAAAAAAA
GAAAAACGCTTTCATTATATCGATGGAATAGAAATACTAACCACTATACAGAGCATATATAGAAGTACATACATTCGCCCCCAAGAAACAAAACTAATAT
TCCAAACGCCTCACATCAGGGTTAACAATGTATACATTGGAGTACTACCTTGCAACGAACTTCGACGCGTATACGAAGAAGCTGGTGACTCTATATTCTT
TGAAAACATTCGTGAATGGTTAGGATTCCAAGGAAAAAAAGTAAAATCCGGCGGGGTTCGTGAAACAGTCAATGAAGCAATAGCATCAACACTCGAAGAC
TCGCCAGAGAAAATGCTCGAAAGAAATAACGGCATAGTAATCAGAGCATCACAAGTGGAGGAAACCTCAAACTCATCCTTGAAACTAAGAGATGCTAGTA
TTGTAAACGGCTGCCAGACTACTATGAGTGTATTTTTCGTCAATCCTGCCGATGGACATGTGCTAGCAAAAATTGTAGAGACAGAAGATTCATGGGAGAT
AGCTAAGGCGGCCAATTTCCAGACAGAAATAGAACGAATAGAACTTGAACTAGCCAGATATCTAAGACCACAACTTGCCAGATCTGTTGGAGCAGAGAAT
AATTTTAAATTCGACCAAAAAGAAGTAACAAAAGGCAAATCAGCCTTTGCTCTACTCGACCAAATATATAAAGATGAAATTTGCTATGATGAACTAAAAT
CGATATTTATCGGACTATTTTCACGCTCTGCAAACAATGCGATATCGCCAAACTATACCGAGCTTAGAATTGATGTACTTCAAAACTTCGAAAGAGACTC
TGAAAAATCTAAATTCCTAGAGGCTCTTTTCGTGCTCCACAGCAAATCATCTACGGCGATGGAGTCTTTGAAAGATGGTTTGTTAAAACCTGAAATTATG
GATCTATTTAAAAGATTTTGGAAAGAAGACAAACCATCATATAGGGCATTTGTCACACTCTTAGCCATATTCAGCGCCCTTGACAAAAAAAATCGCAGGT
TTGAAGACTACAACGACATAAAGAGCGGAATAATAAAACTAGCAGGACAAATAGAAATCGACCCCAGCGAATACATAGAAACATATATAAAAGCCTTTAA
AACTATAGCGCTAGACGTCCTCAAAGGCAGCGAGGACAAGGATAAAATGCTGCAAAGCATGTATCATCACATTGGCTCAATGAATTTTGAAAATGCTTTA
CTATCCATGTCACTATTGTAAATAACTCCCTAAGGAGCTATTCCTCAAATTTTTATTTTCTGACACTCCCTTTCGCCTCCGGAGCGTCACTTTTGCCAGT
CGCGGCAAAAGTAACCAAAAACGCTTGCCCCTGCATCCGGCCCCAGTCGCTTCGCGACTGGGGTTCCCTCCATCGCCGTTCCGGGGGCACGCCGCCACGG
TCCTTCGTGGACCGAGGCGGCTTTCGCGGCATCCTGCCGCTCAACCCCCTACACGACGATTCCGCTCGGCCTCCTGATGGGGCGGACCGGAGCGTCGGAT
ATTTCTCTGGAAGAGGTAGGGCAAATCACGCACAGCGTGATTCGCAAGATGGGGCAGAGTTGCCAGCGCCGGGCGGCGCAGGTTTGGTAAAAAGCCTTGT
TTCATGTGGTTTCTTTGATAGAGAGAGTCTTTCAGCTTCGCTCATTCCGCTCGGTTGTTTCGTTCCTCTCGTCTCAATACTCTGCCACCGGCGCCTAAGA
AACGCTAAACCACGCAGCGGCCAGACCGCTCCCGACAGCCAAGCGGCTTTTTTGAGTCTGCGGTATTCTCTCGCCCTCAAAATCTCTGCAACGCCGGGAG
TGGACGAATACAAGACCCGAAAGGAAATATGTCCGGCCCTCTGCGTGGGGTTTTCTTAACTCCCGGCACCCCAGCCCCAAGAAAGCTGGTCACATCACGC
AGAGGTAACGGAAATGCCTATCACCAATCCCATATCTCCATCCACACCGCTTCATCCCACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1719 bp572 aa1031821+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MANKTDNLPDFLQDYASLFSHFQGQMDGLTTVQIGDKFASLAEHLIPHTEAGSDFERATKSKKSWDKGVDLIFQHKEINGVELRVQSKYTISSVDDVDLI
ISKFQEYDSKDATNKQHELDLLGSLEEDSRQTSKYLIITSSKISNIIAKFLESQRPSRFFLERIKKEKRFHYIDGIEILTTIQSIYRSTYIRPQETKLIF
QTPHIRVNNVYIGVLPCNELRRVYEEAGDSIFFENIREWLGFQGKKVKSGGVRETVNEAIASTLEDSPEKMLERNNGIVIRASQVEETSNSSLKLRDASI
VNGCQTTMSVFFVNPADGHVLAKIVETEDSWEIAKAANFQTEIERIELELARYLRPQLARSVGAENNFKFDQKEVTKGKSAFALLDQIYKDEICYDELKS
IFIGLFSRSANNAISPNYTELRIDVLQNFERDSEKSKFLEALFVLHSKSSTAMESLKDGLLKPEIMDLFKRFWKEDKPSYRAFVTLLAIFSALDKKNRRF
EDYNDIKSGIIKLAGQIEIDPSEYIETYIKAFKTIALDVLKGSEDKDKMLQSMYHHIGSMNFENALLSMSLL

 

Blast result :
Comments
ISPa4 is associated with the exotoxin A (toxA) gene. Note that ISPa4 DNA sequence displays some similarity with plasmids from various origins (pAD1 from Streptococcus faecalis, pLAB1000 from Lactobacillus hilgardii, or pE194 from Staphylococcus aureus (Sokol et al., 1994).
References
1] Sokol, P.A., Luan, M.-Z., Storey, D.G., and Thirukkumaran, P. (1994) J. Bacteriol. 176, 553-562.