ISPa2

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS-PA-2
Accession numberTranspositionOriginHost
M27186 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa CPs147
Pseudomonas aeruginosa Ps388
DNA section
IS Length : 786 bp

Ends


IR Length : 0

IRL : TGGCGGGCCTGCTCTTCGGCTTTGCGTTTGGCCTCAGCGCTGCTTGTTCA
IRR : GGGTGTTTAAAAAGGCTAATTCGACGTAAATAATCAGCCATGCACTCATG

Insertion site


Left flankDirect repeatRight flankDR Length
CGCTCATCTGGCAAGCGGCGATAAG5

DNA sequence

TGGCGGGCCTGCTCTTCGGCTTTGCGTTTGGCCTCAGCGCTGCTTGTTCACGCGCCTTGTTTGCTGCGGCCGCCTCAATACTTGCTTTGGCGGCGGTCAA
CGTATTCATGCGGATCTGGAGACTACTGATCGCTTCGGTGAAGAGTTCTACGTTATAAGCTGCCGTGAGACCTTCCATTTCCCTGTCGAGGAAGCGCATA
TAGGCTTCAGGCCGTTAATATTGCCTTCTCGCACCGCTTGTTCACCGATCTCTTCCGCCGTACGGGTAAGGAAATTCTTTGCACCCAGGCTGGTAATCTT
CTTCTGATTCAGCAGTAGTTTTTGATTCTTTTGCTGGAGGGCGTTTCCAACGATGGTCAGACTGCGGTTGATGACGTCCAATGGTGCAAGATTCTTTGCC
GGACCAAGAGCGGCATCAGCCTTATCCAGCTCGGCTTGTACCGACGCCTCAAGTTTTTTCTCGGCATCTCGGAACTGAAGCTCGATCTCCCTGCGTTTTT
CTTTAACCTGAAGAGGAACATAGCGTCTGGGGTCAACGCCCAGATCAGCATAACTTTCAAACTCTTGCCAGCCATTTTCAGTGGACGAATCCAAGCCGTG
CTCTATAGGTCTGGCAATGGGGCCAATGCCGGTACCTCCCCCAGGGCCGTAATAAACGTCTCCGCTTGCCGTAACAGTTGTAGAGTTGAAGTGGATAAGG
TCAGCAATGGGTCGTGCCATATGTATCTCCTACTTCCATGAGTGCATGGCTGATTATTTACGTCGAATTAGCCTTTTTAAACACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
573 bp190 aa67639+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADLGVDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDK
ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGLKPICASSTGKWKVSRQLIT

 

Blast result :
Comments
ISPa2 is associated with the exotoxin A (toxA) gene.
References
1] Pritchard, A.E., and Vasil, M.L. (1990) J. Bacteriol. 172, 2020-2028.