ISPa2
- Family ISNCY
- Group
Isoform Synonym(s) IS-PA-2
Accession number | Transposition | Origin | Host |
---|---|---|---|
M27186 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa CPs147 Pseudomonas aeruginosa Ps388 |
DNA section
IS Length : 786 bp
Ends
IR Length : 0
IRL : TGGCGGGCCTGCTCTTCGGCTTTGCGTTTGGCCTCAGCGCTGCTTGTTCA
IRR : GGGTGTTTAAAAAGGCTAATTCGACGTAAATAATCAGCCATGCACTCATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCTCATCTG | GCAAG | CGGCGATAAG | 5 |
DNA sequence
TGGCGGGCCTGCTCTTCGGCTTTGCGTTTGGCCTCAGCGCTGCTTGTTCACGCGCCTTGTTTGCTGCGGCCGCCTCAATACTTGCTTTGGCGGCGGTCAA
CGTATTCATGCGGATCTGGAGACTACTGATCGCTTCGGTGAAGAGTTCTACGTTATAAGCTGCCGTGAGACCTTCCATTTCCCTGTCGAGGAAGCGCATA
TAGGCTTCAGGCCGTTAATATTGCCTTCTCGCACCGCTTGTTCACCGATCTCTTCCGCCGTACGGGTAAGGAAATTCTTTGCACCCAGGCTGGTAATCTT
CTTCTGATTCAGCAGTAGTTTTTGATTCTTTTGCTGGAGGGCGTTTCCAACGATGGTCAGACTGCGGTTGATGACGTCCAATGGTGCAAGATTCTTTGCC
GGACCAAGAGCGGCATCAGCCTTATCCAGCTCGGCTTGTACCGACGCCTCAAGTTTTTTCTCGGCATCTCGGAACTGAAGCTCGATCTCCCTGCGTTTTT
CTTTAACCTGAAGAGGAACATAGCGTCTGGGGTCAACGCCCAGATCAGCATAACTTTCAAACTCTTGCCAGCCATTTTCAGTGGACGAATCCAAGCCGTG
CTCTATAGGTCTGGCAATGGGGCCAATGCCGGTACCTCCCCCAGGGCCGTAATAAACGTCTCCGCTTGCCGTAACAGTTGTAGAGTTGAAGTGGATAAGG
TCAGCAATGGGTCGTGCCATATGTATCTCCTACTTCCATGAGTGCATGGCTGATTATTTACGTCGAATTAGCCTTTTTAAACACCC
CGTATTCATGCGGATCTGGAGACTACTGATCGCTTCGGTGAAGAGTTCTACGTTATAAGCTGCCGTGAGACCTTCCATTTCCCTGTCGAGGAAGCGCATA
TAGGCTTCAGGCCGTTAATATTGCCTTCTCGCACCGCTTGTTCACCGATCTCTTCCGCCGTACGGGTAAGGAAATTCTTTGCACCCAGGCTGGTAATCTT
CTTCTGATTCAGCAGTAGTTTTTGATTCTTTTGCTGGAGGGCGTTTCCAACGATGGTCAGACTGCGGTTGATGACGTCCAATGGTGCAAGATTCTTTGCC
GGACCAAGAGCGGCATCAGCCTTATCCAGCTCGGCTTGTACCGACGCCTCAAGTTTTTTCTCGGCATCTCGGAACTGAAGCTCGATCTCCCTGCGTTTTT
CTTTAACCTGAAGAGGAACATAGCGTCTGGGGTCAACGCCCAGATCAGCATAACTTTCAAACTCTTGCCAGCCATTTTCAGTGGACGAATCCAAGCCGTG
CTCTATAGGTCTGGCAATGGGGCCAATGCCGGTACCTCCCCCAGGGCCGTAATAAACGTCTCCGCTTGCCGTAACAGTTGTAGAGTTGAAGTGGATAAGG
TCAGCAATGGGTCGTGCCATATGTATCTCCTACTTCCATGAGTGCATGGCTGATTATTTACGTCGAATTAGCCTTTTTAAACACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
573 bp | 190 aa | 67 | 639 | + | No |
Chemistry : Unknow
ORF sequence :
MARPIADLIHFNSTTVTASGDVYYGPGGGTGIGPIARPIEHGLDSSTENGWQEFESYADLGVDPRRYVPLQVKEKRREIELQFRDAEKKLEASVQAELDK
ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGLKPICASSTGKWKVSRQLIT
ADAALGPAKNLAPLDVINRSLTIVGNALQQKNQKLLLNQKKITSLGAKNFLTRTAEEIGEQAVREGNINGLKPICASSTGKWKVSRQLIT
Blast result :
Comments
ISPa2 is associated with the exotoxin A (toxA) gene.
References
1] Pritchard, A.E., and Vasil, M.L. (1990) J. Bacteriol. 172, 2020-2028.