ISPa1
- Family ISNCY
- Group
Isoform Synonym(s) IS-PA-1
Accession number | Transposition | Origin | Host |
---|---|---|---|
M27175 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa PA103 Pseudomonas aeruginosa CF2-10 Pseudomonas aeruginosa CF3-1 Pseudomonas aeruginosa PAO1 |
DNA section
IS Length : 1035 bp
Ends
IR Length : 0
IRL : TGACTGGGAGAGGGTTCTCTAGGTGGGAGTCGCTCAATACATTACACTTT
IRR : TATTGGCAGCCCTGATCGCCGCTTGACGAGCGATTTCCTTGCGCCTTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCATTGGGG | CTTAT | GCCATGCCAG | 5 |
DNA sequence
TGACTGGGAGAGGGTTCTCTAGGTGGGAGTCGCTCAATACATTACACTTTCAAATTAATGTAGGGGCGATCTATGGCTGTCAATGATTACGAACCTGGTT
CGATGGTTATTACACATGTGCAGGGTGGTGGGCGTGACATAATCCAGTATATTCCTGCTCGATCAAGCTACGGTACTCCACCATTTGTCCCACCAGGACC
AAGTCCGTATGTCGGTACTGGAATGCAGGAGTACAGGAAGCTAAGAAGTACGCTTGATAAGTCCCATTCAGAACTCAAGAAAAACCTGAAAAATGAAACC
CTGAAGGAGGTTGATGAACTCAAGAGTGAAGCGGGGTTGCCAGGTAAAGCGGTCAGTGCCAATGACATCCGCGATGAAAAGAGTATCGTTGATGCACTCA
TGGATGCCAAAGCAAAATCGCTAAAGGTCATTGAGGATCGCCCGGCCAATCTTTATACGGCTTCAGACTTTCCTCAGAAGTCAGAGTCGATGTACCAGAG
TCAGTTGCTGGCCAGCCGAAAATTCTATGGAGAGTTCCTGGATCGCCATATGAGTGAGCTGGCCAAAGCGTACAGCGCCGATATCTATAAGGCGCAAATC
GCTATCTTGAAACAAACGTCTCAAGAGCTGGAGAATAAAGCCCGGTCATTGGAAGCAGAAGCCCAGCGAGCCGCTGCTGAGGTGGAGGCGGACTACAAGG
CCAGGAAGGCAAATGTCGAGAAAAAAGTGCAGTCCGAGCTTGACCAGGCTGGGAATGCTTTGCCTCAACTGACCAATCCAACGCCAGAGCAGTGGCTTGA
ACGCGCTACTCAACTCCTTACGCAGGCGATCGCAATAAGAAGAATTGCAGACTGCAAACAATGCCTTGATTGCCAAGGCACCCAATGCACTGGAGAAACA
AAAGGCAACCTACAACGCCGATGTCCTACCTAGTGGATGAAATCGCCAGCCTGCAAGCACGGCTGGACAAGCTGAACGCCGAAACGGCAAGGCGCAAGGA
AATCGCTCGTCAAGCGGCGATCAGGGCTGCCAATA
CGATGGTTATTACACATGTGCAGGGTGGTGGGCGTGACATAATCCAGTATATTCCTGCTCGATCAAGCTACGGTACTCCACCATTTGTCCCACCAGGACC
AAGTCCGTATGTCGGTACTGGAATGCAGGAGTACAGGAAGCTAAGAAGTACGCTTGATAAGTCCCATTCAGAACTCAAGAAAAACCTGAAAAATGAAACC
CTGAAGGAGGTTGATGAACTCAAGAGTGAAGCGGGGTTGCCAGGTAAAGCGGTCAGTGCCAATGACATCCGCGATGAAAAGAGTATCGTTGATGCACTCA
TGGATGCCAAAGCAAAATCGCTAAAGGTCATTGAGGATCGCCCGGCCAATCTTTATACGGCTTCAGACTTTCCTCAGAAGTCAGAGTCGATGTACCAGAG
TCAGTTGCTGGCCAGCCGAAAATTCTATGGAGAGTTCCTGGATCGCCATATGAGTGAGCTGGCCAAAGCGTACAGCGCCGATATCTATAAGGCGCAAATC
GCTATCTTGAAACAAACGTCTCAAGAGCTGGAGAATAAAGCCCGGTCATTGGAAGCAGAAGCCCAGCGAGCCGCTGCTGAGGTGGAGGCGGACTACAAGG
CCAGGAAGGCAAATGTCGAGAAAAAAGTGCAGTCCGAGCTTGACCAGGCTGGGAATGCTTTGCCTCAACTGACCAATCCAACGCCAGAGCAGTGGCTTGA
ACGCGCTACTCAACTCCTTACGCAGGCGATCGCAATAAGAAGAATTGCAGACTGCAAACAATGCCTTGATTGCCAAGGCACCCAATGCACTGGAGAAACA
AAAGGCAACCTACAACGCCGATGTCCTACCTAGTGGATGAAATCGCCAGCCTGCAAGCACGGCTGGACAAGCTGAACGCCGAAACGGCAAGGCGCAAGGA
AATCGCTCGTCAAGCGGCGATCAGGGCTGCCAATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
861 bp | 286 aa | 73 | 933 | + | No |
Chemistry : Unknow
ORF sequence :
MAVNDYEPGSMVITHVQGGGRDIIQYIPARSSYGTPPFVPPGPSPYVGTGMQEYRKLRSTLDKSHSELKKNLKNETLKEVDELKSEAGLPGKAVSANDIR
DEKSIVDALMDAKAKSLKVIEDRPANLYTASDFPQKSESMYQSQLLASRKFYGEFLDRHMSELAKAYSADIYKAQIAILKQTSQELENKARSLEAEAQRA
AAEVEADYKARKANVEKKVQSELDQAGNALPQLTNPTPEQWLERATQLLTQAIAIRRIADCKQCLDCQGTQCTGETKGNLQRRCPT
DEKSIVDALMDAKAKSLKVIEDRPANLYTASDFPQKSESMYQSQLLASRKFYGEFLDRHMSELAKAYSADIYKAQIAILKQTSQELENKARSLEAEAQRA
AAEVEADYKARKANVEKKVQSELDQAGNALPQLTNPTPEQWLERATQLLTQAIAIRRIADCKQCLDCQGTQCTGETKGNLQRRCPT
Blast result :
Comments
ISPa1 is located about 1 kb upstream of the exotoxin A (toxA) gene of Pseudomonas aeruginosa PA103 (Pritchard and Vasil, 1990).
References
1] Pritchard, A.E., and Vasil, M.L. (1990) J. Bacteriol. 172, 2020-2028.