ISPa1

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS-PA-1
Accession numberTranspositionOriginHost
M27175 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa PA103
Pseudomonas aeruginosa CF2-10
Pseudomonas aeruginosa CF3-1
Pseudomonas aeruginosa PAO1
DNA section
IS Length : 1035 bp

Ends


IR Length : 0

IRL : TGACTGGGAGAGGGTTCTCTAGGTGGGAGTCGCTCAATACATTACACTTT
IRR : TATTGGCAGCCCTGATCGCCGCTTGACGAGCGATTTCCTTGCGCCTTGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TGCATTGGGGCTTATGCCATGCCAG5

DNA sequence

TGACTGGGAGAGGGTTCTCTAGGTGGGAGTCGCTCAATACATTACACTTTCAAATTAATGTAGGGGCGATCTATGGCTGTCAATGATTACGAACCTGGTT
CGATGGTTATTACACATGTGCAGGGTGGTGGGCGTGACATAATCCAGTATATTCCTGCTCGATCAAGCTACGGTACTCCACCATTTGTCCCACCAGGACC
AAGTCCGTATGTCGGTACTGGAATGCAGGAGTACAGGAAGCTAAGAAGTACGCTTGATAAGTCCCATTCAGAACTCAAGAAAAACCTGAAAAATGAAACC
CTGAAGGAGGTTGATGAACTCAAGAGTGAAGCGGGGTTGCCAGGTAAAGCGGTCAGTGCCAATGACATCCGCGATGAAAAGAGTATCGTTGATGCACTCA
TGGATGCCAAAGCAAAATCGCTAAAGGTCATTGAGGATCGCCCGGCCAATCTTTATACGGCTTCAGACTTTCCTCAGAAGTCAGAGTCGATGTACCAGAG
TCAGTTGCTGGCCAGCCGAAAATTCTATGGAGAGTTCCTGGATCGCCATATGAGTGAGCTGGCCAAAGCGTACAGCGCCGATATCTATAAGGCGCAAATC
GCTATCTTGAAACAAACGTCTCAAGAGCTGGAGAATAAAGCCCGGTCATTGGAAGCAGAAGCCCAGCGAGCCGCTGCTGAGGTGGAGGCGGACTACAAGG
CCAGGAAGGCAAATGTCGAGAAAAAAGTGCAGTCCGAGCTTGACCAGGCTGGGAATGCTTTGCCTCAACTGACCAATCCAACGCCAGAGCAGTGGCTTGA
ACGCGCTACTCAACTCCTTACGCAGGCGATCGCAATAAGAAGAATTGCAGACTGCAAACAATGCCTTGATTGCCAAGGCACCCAATGCACTGGAGAAACA
AAAGGCAACCTACAACGCCGATGTCCTACCTAGTGGATGAAATCGCCAGCCTGCAAGCACGGCTGGACAAGCTGAACGCCGAAACGGCAAGGCGCAAGGA
AATCGCTCGTCAAGCGGCGATCAGGGCTGCCAATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
861 bp286 aa73933+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MAVNDYEPGSMVITHVQGGGRDIIQYIPARSSYGTPPFVPPGPSPYVGTGMQEYRKLRSTLDKSHSELKKNLKNETLKEVDELKSEAGLPGKAVSANDIR
DEKSIVDALMDAKAKSLKVIEDRPANLYTASDFPQKSESMYQSQLLASRKFYGEFLDRHMSELAKAYSADIYKAQIAILKQTSQELENKARSLEAEAQRA
AAEVEADYKARKANVEKKVQSELDQAGNALPQLTNPTPEQWLERATQLLTQAIAIRRIADCKQCLDCQGTQCTGETKGNLQRRCPT

 

Blast result :
Comments
ISPa1 is located about 1 kb upstream of the exotoxin A (toxA) gene of Pseudomonas aeruginosa PA103 (Pritchard and Vasil, 1990).
References
1] Pritchard, A.E., and Vasil, M.L. (1990) J. Bacteriol. 172, 2020-2028.