ISNme1
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ391282 | Y | Neisseria meningitidis | Neisseria meningitidis BZ198 |
DNA section
IS Length : 1221 bp
Ends
IR Length : 24/30
IRL : TGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGCCAT
IRR : TGAGACCTTTGCAAAATTCCTTTCCCTCCCGACAGCCGAAACCCAAACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGCCATTTAGGGGATTTTCCATGAGCACCTTCTTCCAGCAAACCTCCCAAGCCATG
ATTGCCAAACACATCGACCGCTTCCCTCTATTGAAGTTGGATCAAGTGATTGATTGGCAGCCAATCGAACAATACCTGAACCGTCAAAAAACCCGTTACC
TTAGAGACCACCGCGGCCGTCCCGCCTATCCCCTGTTGTCCATGTTCAAAGCCGTCCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACA
CAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGTTGGCG
CAAGACAACACCCTGTCCGAATTATTGGAACTGATCAACCGCCAACTGACCGAAAAAGGCTTAAAAGTAGAGAAAGCATCCGCCGCCGTCATTGATGCCA
CCATTATTCAGACTGCCGGCAGCAAACAGCGCCAGGCCATAGAAGTCGACGAGGAAGGACAAGTCAGCGGTCAAACCACACTGAGTAAGGACAAAAATGC
CCGTTGGACAAAGAAAAACGGCCTCTACAAACTCGGTTACAAACAACATACCCGTACCGATGCGGAAGGCTATATCGAGAAACTGCACATCACCCCCGCC
AATGCCCATGAGTGCAAACACCTGTCGCCTTTGCTGGAAGGACTGCCCAAAGGTACGACCGTCTATGCCGACAAAGGCTACGACAGTGCGGAAAACCGGC
AACATCTGGAAGAACATCAGTTGTTAGACGGCATTATGCGCAAAGCCTGCCGCAACCGGCCGCTGTCGGAAGTGCAAACCAAACGCAACCGGTATTTGTC
GAAGACCCGTTATGTGGTCGAACAAAGCTTCGGTACGCTGCACCGTAAATTCCGCTATGCGCGGGCAGCCTATTTCGGGCTGCTCAAAGTGAGTGCGCAA
AGCCACCTGAAGGCGATGTGTTTGAACCTGTTGAAAGCCGCCAACAGGCTAAGTGCGCCCGCTGCCGCCTAAAAGGCGGTCCGGATGCCTGATTATCGGG
TATCCGGGGAGGATTAAGGGGATATTTGGGTAAAATTAGGAGGTATTTGGGGCTAAAACAGCCGAAAACCTGTGTTTGGGTTTCGGCTGTCGGGAGGGAA
AGGAATTTTGCAAAGGTCTCA
ATTGCCAAACACATCGACCGCTTCCCTCTATTGAAGTTGGATCAAGTGATTGATTGGCAGCCAATCGAACAATACCTGAACCGTCAAAAAACCCGTTACC
TTAGAGACCACCGCGGCCGTCCCGCCTATCCCCTGTTGTCCATGTTCAAAGCCGTCCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACA
CAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGTTGGCG
CAAGACAACACCCTGTCCGAATTATTGGAACTGATCAACCGCCAACTGACCGAAAAAGGCTTAAAAGTAGAGAAAGCATCCGCCGCCGTCATTGATGCCA
CCATTATTCAGACTGCCGGCAGCAAACAGCGCCAGGCCATAGAAGTCGACGAGGAAGGACAAGTCAGCGGTCAAACCACACTGAGTAAGGACAAAAATGC
CCGTTGGACAAAGAAAAACGGCCTCTACAAACTCGGTTACAAACAACATACCCGTACCGATGCGGAAGGCTATATCGAGAAACTGCACATCACCCCCGCC
AATGCCCATGAGTGCAAACACCTGTCGCCTTTGCTGGAAGGACTGCCCAAAGGTACGACCGTCTATGCCGACAAAGGCTACGACAGTGCGGAAAACCGGC
AACATCTGGAAGAACATCAGTTGTTAGACGGCATTATGCGCAAAGCCTGCCGCAACCGGCCGCTGTCGGAAGTGCAAACCAAACGCAACCGGTATTTGTC
GAAGACCCGTTATGTGGTCGAACAAAGCTTCGGTACGCTGCACCGTAAATTCCGCTATGCGCGGGCAGCCTATTTCGGGCTGCTCAAAGTGAGTGCGCAA
AGCCACCTGAAGGCGATGTGTTTGAACCTGTTGAAAGCCGCCAACAGGCTAAGTGCGCCCGCTGCCGCCTAAAAGGCGGTCCGGATGCCTGATTATCGGG
TATCCGGGGAGGATTAAGGGGATATTTGGGTAAAATTAGGAGGTATTTGGGGCTAAAACAGCCGAAAACCTGTGTTTGGGTTTCGGCTGTCGGGAGGGAA
AGGAATTTTGCAAAGGTCTCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1069 bp | 335 aa | 65 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MSTFFQQTSQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKTRYLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPD
YSTLCRYRNWLAQDNTLSELLELINRQLTEKGLKVEKASAAVIDATIIQTAGSKQRQAIEVDEEGQVSGQTTLSKDKNARWTKKNGLYKLGYKQHTRTDA
EGYIEKLHITPANAHECKHLSPLLEGLPKGTTVYADKGYDSAENRQHLEEHQLLDGIMRKACRNRPLSEVQTKRNRYLSKTRYVVEQSFGTLHRKFRYAR
AAYFGLLKVSAQSHLKAMCLNLLKAANRLSAPAAA
YSTLCRYRNWLAQDNTLSELLELINRQLTEKGLKVEKASAAVIDATIIQTAGSKQRQAIEVDEEGQVSGQTTLSKDKNARWTKKNGLYKLGYKQHTRTDA
EGYIEKLHITPANAHECKHLSPLLEGLPKGTTVYADKGYDSAENRQHLEEHQLLDGIMRKACRNRPLSEVQTKRNRYLSKTRYVVEQSFGTLHRKFRYAR
AAYFGLLKVSAQSHLKAMCLNLLKAANRLSAPAAA
Blast result :
Comments
ISNme1 is 94% idendical to IS1106.
References
1] Klee,S.R., Nassif,X., Kusecek,B., Merker,P., Beretti,J.L., Achtman,M. and Tinsley,C.R. Direct Submission Genbank.