ISNme1

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ391282 Y Neisseria meningitidis
Neisseria meningitidis BZ198
DNA section
IS Length : 1221 bp

Ends


IR Length : 24/30

IRL : TGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGCCAT
IRR : TGAGACCTTTGCAAAATTCCTTTCCCTCCCGACAGCCGAAACCCAAACAC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGCCATTTAGGGGATTTTCCATGAGCACCTTCTTCCAGCAAACCTCCCAAGCCATG
ATTGCCAAACACATCGACCGCTTCCCTCTATTGAAGTTGGATCAAGTGATTGATTGGCAGCCAATCGAACAATACCTGAACCGTCAAAAAACCCGTTACC
TTAGAGACCACCGCGGCCGTCCCGCCTATCCCCTGTTGTCCATGTTCAAAGCCGTCCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACA
CAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGTTGGCG
CAAGACAACACCCTGTCCGAATTATTGGAACTGATCAACCGCCAACTGACCGAAAAAGGCTTAAAAGTAGAGAAAGCATCCGCCGCCGTCATTGATGCCA
CCATTATTCAGACTGCCGGCAGCAAACAGCGCCAGGCCATAGAAGTCGACGAGGAAGGACAAGTCAGCGGTCAAACCACACTGAGTAAGGACAAAAATGC
CCGTTGGACAAAGAAAAACGGCCTCTACAAACTCGGTTACAAACAACATACCCGTACCGATGCGGAAGGCTATATCGAGAAACTGCACATCACCCCCGCC
AATGCCCATGAGTGCAAACACCTGTCGCCTTTGCTGGAAGGACTGCCCAAAGGTACGACCGTCTATGCCGACAAAGGCTACGACAGTGCGGAAAACCGGC
AACATCTGGAAGAACATCAGTTGTTAGACGGCATTATGCGCAAAGCCTGCCGCAACCGGCCGCTGTCGGAAGTGCAAACCAAACGCAACCGGTATTTGTC
GAAGACCCGTTATGTGGTCGAACAAAGCTTCGGTACGCTGCACCGTAAATTCCGCTATGCGCGGGCAGCCTATTTCGGGCTGCTCAAAGTGAGTGCGCAA
AGCCACCTGAAGGCGATGTGTTTGAACCTGTTGAAAGCCGCCAACAGGCTAAGTGCGCCCGCTGCCGCCTAAAAGGCGGTCCGGATGCCTGATTATCGGG
TATCCGGGGAGGATTAAGGGGATATTTGGGTAAAATTAGGAGGTATTTGGGGCTAAAACAGCCGAAAACCTGTGTTTGGGTTTCGGCTGTCGGGAGGGAA
AGGAATTTTGCAAAGGTCTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1069 bp335 aa651133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTFFQQTSQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKTRYLRDHRGRPAYPLLSMFKAVLLGQWHSLSDPELEHSLITRIDFNLFCRFDELSIPD
YSTLCRYRNWLAQDNTLSELLELINRQLTEKGLKVEKASAAVIDATIIQTAGSKQRQAIEVDEEGQVSGQTTLSKDKNARWTKKNGLYKLGYKQHTRTDA
EGYIEKLHITPANAHECKHLSPLLEGLPKGTTVYADKGYDSAENRQHLEEHQLLDGIMRKACRNRPLSEVQTKRNRYLSKTRYVVEQSFGTLHRKFRYAR
AAYFGLLKVSAQSHLKAMCLNLLKAANRLSAPAAA

 

Blast result :
Comments
ISNme1 is 94% idendical to IS1106.
References
1] Klee,S.R., Nassif,X., Kusecek,B., Merker,P., Beretti,J.L., Achtman,M. and Tinsley,C.R. Direct Submission Genbank.