ISNGR9
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE000097 | ND | Rhizobium sp | Rhizobium sp NGR234 plasmid pNGR234a |
DNA section
IS Length : 857 bp
Ends
IR Length : 18
IRL : GTCGTGGTGACGATTTAACGGATTGAGATTCCCAAGAAGGGGCAAATCAG
IRR : GTCGTAGTGACGATTTAACTATTTGAGCCATATGGCGATAGCGGCGAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCGAAGGCA | CTAG | CGGGCCTATG | 4 |
DNA sequence
GTCGTGGTGACGATTTAACGGATTGAGATTCCCAAGAAGGGGCAAATCAGATTCAACACTGACTTTTGGAGGTCAGTGATGGATTGCGATGGGCTTCGGG
ACGATCAATGGGAACGTATCAGAGGTTTTGTGCCCGGGGGCACGAAGGGCAAGCGTGGCCCGCGCACGAACAACCGGCTGTTTCTGGATGCGCTGCTGTG
GATGGCCCGTTCGGGCGGCCGCTGGCGAGACCTGCCAGAACGACTGGGTGACTACCGCGCCGTAAAACGACGCTATTACCGCTGGATCGAGATGGGCGTG
CTCGACGAGATGCTTGCCGTGCTTGCCCGCGAAGCTGATTTGGAATGGTTGATGATCGATTCGACTATCGTGCGCGCCCATCAGCATGCGGCCGGGGCGC
GCAGGGCTAAAGGGGGGCGGATGCCCAGGGCTTGGGTCGGTCTCGAGGCGGGCTGAGCACCAAAATCCATGCTGCCGGCGATGCGCTCGGCCTGCCGCTT
CGCCTCATCGGCACGGCGGGACAGCGCAACGACATCACAGCCGCCCATGATCTCGTCGACGGTCTCCACGCCGATGCCCTGCTGGCCGACAAGGGCTACG
ATGCCGGACATCTCATTGAGAAACTGGAGAAAACAGGAACTGAAATCGTCATCCCGCCCAAACGGGATCGCAAAATGCAAAGGGCCTACGACGCCGCACT
CTATAAAGAACGCAACCGCATCGAGCGCTTCTTCAACAAGCTCAAACAGTTCCGCCGCGTCGCGACACGCTATGACAAGTTGCTCGCCAACTTCATGGGC
TTTGTCAAACTCGCCGCTATCGCCATATGGCTCAAATAGTTAAATCGTCACTACGAC
ACGATCAATGGGAACGTATCAGAGGTTTTGTGCCCGGGGGCACGAAGGGCAAGCGTGGCCCGCGCACGAACAACCGGCTGTTTCTGGATGCGCTGCTGTG
GATGGCCCGTTCGGGCGGCCGCTGGCGAGACCTGCCAGAACGACTGGGTGACTACCGCGCCGTAAAACGACGCTATTACCGCTGGATCGAGATGGGCGTG
CTCGACGAGATGCTTGCCGTGCTTGCCCGCGAAGCTGATTTGGAATGGTTGATGATCGATTCGACTATCGTGCGCGCCCATCAGCATGCGGCCGGGGCGC
GCAGGGCTAAAGGGGGGCGGATGCCCAGGGCTTGGGTCGGTCTCGAGGCGGGCTGAGCACCAAAATCCATGCTGCCGGCGATGCGCTCGGCCTGCCGCTT
CGCCTCATCGGCACGGCGGGACAGCGCAACGACATCACAGCCGCCCATGATCTCGTCGACGGTCTCCACGCCGATGCCCTGCTGGCCGACAAGGGCTACG
ATGCCGGACATCTCATTGAGAAACTGGAGAAAACAGGAACTGAAATCGTCATCCCGCCCAAACGGGATCGCAAAATGCAAAGGGCCTACGACGCCGCACT
CTATAAAGAACGCAACCGCATCGAGCGCTTCTTCAACAAGCTCAAACAGTTCCGCCGCGTCGCGACACGCTATGACAAGTTGCTCGCCAACTTCATGGGC
TTTGTCAAACTCGCCGCTATCGCCATATGGCTCAAATAGTTAAATCGTCACTACGAC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
378 bp | 125 aa | 78 | 455 | + | No |
Description : First part of the transposase
ORF sequence :
MDCDGLRDDQWERIRGFVPGGTKGKRGPRTNNRLFLDALLWMARSGGRWRDLPERLGDYRAVKRRYYRWIEMGVLDEMLAVLAREADLEWLMIDSTIVRA
HQHAAGARRAKGGRMPRAWVGLEAG
HQHAAGARRAKGGRMPRAWVGLEAG
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
429 bp | 142 aa | 410 | 838 | + | No |
Description : Second part of the transposase
ORF sequence :
RGADAQGLGRSRGGLSTKIHAAGDALGLPLRLIGTAGQRNDITAAHDLVDGLHADALLADKGYDAGHLIEKLEKTGTEIVIPPKRDRKMQRAYDAALYKE
RNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK
RNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
761 bp | 253 aa | 78 | 838 | + | Yes |
Chemistry : DDE
ORF sequence :
MDCDGLRDDQWERIRGFVPGGTKGKRGPRTNNRLFLDALLWMARSGGRWRDLPERLGDYRAVKRRYYRWIEMGVLDEMLAVLAREADLEWLMIDSTIVRA
HQHAAGARRAKGGADAQGLGRSRGGLSTKIHAAGDALGLPLRLIGTAGQRNDITAAHDLVDGLHADALLADKGYDAGHLIEKLEKTGTEIVIPPKRDRKM
QRAYDAALYKERNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK
HQHAAGARRAKGGADAQGLGRSRGGLSTKIHAAGDALGLPLRLIGTAGQRNDITAAHDLVDGLHADALLADKGYDAGHLIEKLEKTGTEIVIPPKRDRKM
QRAYDAALYKERNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK
Blast result :
Comments
ISNGR9 is 78% aa similar to ISCc1.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 10 2012.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 10 2012.
References
1] Freiberg, C., Fellay, R., Bairoch, A. Broughton, W.J., Rosenthal, A. and Perret, X. (1997) Nature 387 (6631), 394-401.
2] Freiberg, C. Direct submission to GenBank.
2] Freiberg, C. Direct submission to GenBank.