ISNGR9

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE000097 ND Rhizobium sp
Rhizobium sp NGR234 plasmid pNGR234a
DNA section
IS Length : 857 bp

Ends


IR Length : 18

IRL : GTCGTGGTGACGATTTAACGGATTGAGATTCCCAAGAAGGGGCAAATCAG
IRR : GTCGTAGTGACGATTTAACTATTTGAGCCATATGGCGATAGCGGCGAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATCGAAGGCACTAGCGGGCCTATG4

DNA sequence

GTCGTGGTGACGATTTAACGGATTGAGATTCCCAAGAAGGGGCAAATCAGATTCAACACTGACTTTTGGAGGTCAGTGATGGATTGCGATGGGCTTCGGG
ACGATCAATGGGAACGTATCAGAGGTTTTGTGCCCGGGGGCACGAAGGGCAAGCGTGGCCCGCGCACGAACAACCGGCTGTTTCTGGATGCGCTGCTGTG
GATGGCCCGTTCGGGCGGCCGCTGGCGAGACCTGCCAGAACGACTGGGTGACTACCGCGCCGTAAAACGACGCTATTACCGCTGGATCGAGATGGGCGTG
CTCGACGAGATGCTTGCCGTGCTTGCCCGCGAAGCTGATTTGGAATGGTTGATGATCGATTCGACTATCGTGCGCGCCCATCAGCATGCGGCCGGGGCGC
GCAGGGCTAAAGGGGGGCGGATGCCCAGGGCTTGGGTCGGTCTCGAGGCGGGCTGAGCACCAAAATCCATGCTGCCGGCGATGCGCTCGGCCTGCCGCTT
CGCCTCATCGGCACGGCGGGACAGCGCAACGACATCACAGCCGCCCATGATCTCGTCGACGGTCTCCACGCCGATGCCCTGCTGGCCGACAAGGGCTACG
ATGCCGGACATCTCATTGAGAAACTGGAGAAAACAGGAACTGAAATCGTCATCCCGCCCAAACGGGATCGCAAAATGCAAAGGGCCTACGACGCCGCACT
CTATAAAGAACGCAACCGCATCGAGCGCTTCTTCAACAAGCTCAAACAGTTCCGCCGCGTCGCGACACGCTATGACAAGTTGCTCGCCAACTTCATGGGC
TTTGTCAAACTCGCCGCTATCGCCATATGGCTCAAATAGTTAAATCGTCACTACGAC
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
378 bp125 aa78455+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MDCDGLRDDQWERIRGFVPGGTKGKRGPRTNNRLFLDALLWMARSGGRWRDLPERLGDYRAVKRRYYRWIEMGVLDEMLAVLAREADLEWLMIDSTIVRA
HQHAAGARRAKGGRMPRAWVGLEAG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
429 bp142 aa410838+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

RGADAQGLGRSRGGLSTKIHAAGDALGLPLRLIGTAGQRNDITAAHDLVDGLHADALLADKGYDAGHLIEKLEKTGTEIVIPPKRDRKMQRAYDAALYKE
RNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
761 bp253 aa78838+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDCDGLRDDQWERIRGFVPGGTKGKRGPRTNNRLFLDALLWMARSGGRWRDLPERLGDYRAVKRRYYRWIEMGVLDEMLAVLAREADLEWLMIDSTIVRA
HQHAAGARRAKGGADAQGLGRSRGGLSTKIHAAGDALGLPLRLIGTAGQRNDITAAHDLVDGLHADALLADKGYDAGHLIEKLEKTGTEIVIPPKRDRKM
QRAYDAALYKERNRIERFFNKLKQFRRVATRYDKLLANFMGFVKLAAIAIWLK

 

Blast result :
Comments
ISNGR9 is 78% aa similar to ISCc1.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
File updated: July 10 2012.
References
1] Freiberg, C., Fellay, R., Bairoch, A. Broughton, W.J., Rosenthal, A. and Perret, X. (1997) Nature 387 (6631), 394-401.
2] Freiberg, C. Direct submission to GenBank.