ISNGR8
- Family IS256
- Group
Isoform ISRm3Synonym(s) NGRIS-34
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE000091 | ND | Rhizobium sp | Rhizobium sp NGR234 Rhizobium sp NGR234 plasmid pNGR234a |
DNA section
IS Length : 1298 bp
Ends
IR Length : 29
IRL : GGGACTGTCAGGAATTCTGTGCGGGGGGCCATGATGATGAAAAGGAGCGA
IRR : GGGACTGTCAGGAATTCTGTGCGGGGGGCCGGTTTGATCAGTTGAAGAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGGTGATA | GTCTTGCAC | CCATATGACG | 9 |
DNA sequence
GGGACTGTCAGGAATTCTGTGCGGGGGGCCATGATGATGAAAAGGAGCGAATCATCACATGGCTATCGAAAAAGAACTTCTGGACCAGCTTCTCGCCGGT
CGTGATCCATCCGAGGTTTTCGGCAAGGACGGGTTGCTGGACGATCTGAAGAAAGCGCTCTCGGAGCGCATCTTAAATGCGGAGCTCGACGAGCATCTTG
ACGTCGAGCGTAGCGAGGGAACAGCCGCCAACCGCCGCAATGGCTCTTCGAAGAAGACGGTTTTGACTGGGACGTCGAAAATGACGCTCACCATCCCGCG
CGATCGGGCCGGCACGTTCGACCCGAAACTGATCGCGAGATATCAGCGCCGCTTTCCCGATTTCGACGACAAGATCATTTCCATGTATGCCCGCGGCATG
ACGGTGCGCGAGATCCAGGGCCATCTCGAAGACATCTACGGCATCGACGTGTCGCCGGACCTGATTTCGGCGGTGACAGACCAGGTTCTGGAAGCCGTTG
GGGAATGGCAGAATAGGCCGCTCGAGCTTTGCTATCCACTCGTGTTCTTCGATGCCATCCGGGTCAAGATCCGGGACGAAGGTTTCGTTCGCAACAAGGC
GGTCTATGTTGCGCTCGCCGTTCTGGCGGACGGTACCAAGGAAATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTTCGGGTGATG
AACGAACTGAAGAGCCGCGGCTGCCAGGACATCCTGATCGCCGTGGTCGACGGCCTGAAGGGTTTCCCCGATGCCATCACCGCCGTCTTTCCCCAAACGA
TCGTGCAGACCTGCATTGTCCATCTGATCCGGCATTCCCTGGAATTCGTGTCCTACAAGGATAGAAAGCCCGTCGTGCCGGCGTTGAGAGCCATTTACCG
TGCTCGGGATGCGGAGGCCGGCCTGAAGGCGCTGGAGGCCTTCGAGGAGGGTTATTGGGGTCAGAAATACCCTGCCATCTCTCAGAGCTGGCGGCGCAAT
TGGGAACACGTCGTTCCCTTCTTCGCTTTCCCGGAAGGCGTCCGCCGCATCATTTATACCACGAACGCCATAGAGGCCTTGAACTCGAAGCTTCGCCGAG
CTGTGCGCTCGCGCGGCCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTGGTTCTCAATAACGCCGCCGAGCAATGGAAGCGCGCGCCGCG
GGAATGGGTTGAGGCAAAGACACAGTTTGCCGTTATCTTCGGCGAACGGTTCTTCAACTGATCAAACCGGCCCCCCGCACAGAATTCCTGACAGTCCC
CGTGATCCATCCGAGGTTTTCGGCAAGGACGGGTTGCTGGACGATCTGAAGAAAGCGCTCTCGGAGCGCATCTTAAATGCGGAGCTCGACGAGCATCTTG
ACGTCGAGCGTAGCGAGGGAACAGCCGCCAACCGCCGCAATGGCTCTTCGAAGAAGACGGTTTTGACTGGGACGTCGAAAATGACGCTCACCATCCCGCG
CGATCGGGCCGGCACGTTCGACCCGAAACTGATCGCGAGATATCAGCGCCGCTTTCCCGATTTCGACGACAAGATCATTTCCATGTATGCCCGCGGCATG
ACGGTGCGCGAGATCCAGGGCCATCTCGAAGACATCTACGGCATCGACGTGTCGCCGGACCTGATTTCGGCGGTGACAGACCAGGTTCTGGAAGCCGTTG
GGGAATGGCAGAATAGGCCGCTCGAGCTTTGCTATCCACTCGTGTTCTTCGATGCCATCCGGGTCAAGATCCGGGACGAAGGTTTCGTTCGCAACAAGGC
GGTCTATGTTGCGCTCGCCGTTCTGGCGGACGGTACCAAGGAAATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTTCGGGTGATG
AACGAACTGAAGAGCCGCGGCTGCCAGGACATCCTGATCGCCGTGGTCGACGGCCTGAAGGGTTTCCCCGATGCCATCACCGCCGTCTTTCCCCAAACGA
TCGTGCAGACCTGCATTGTCCATCTGATCCGGCATTCCCTGGAATTCGTGTCCTACAAGGATAGAAAGCCCGTCGTGCCGGCGTTGAGAGCCATTTACCG
TGCTCGGGATGCGGAGGCCGGCCTGAAGGCGCTGGAGGCCTTCGAGGAGGGTTATTGGGGTCAGAAATACCCTGCCATCTCTCAGAGCTGGCGGCGCAAT
TGGGAACACGTCGTTCCCTTCTTCGCTTTCCCGGAAGGCGTCCGCCGCATCATTTATACCACGAACGCCATAGAGGCCTTGAACTCGAAGCTTCGCCGAG
CTGTGCGCTCGCGCGGCCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTGGTTCTCAATAACGCCGCCGAGCAATGGAAGCGCGCGCCGCG
GGAATGGGTTGAGGCAAAGACACAGTTTGCCGTTATCTTCGGCGAACGGTTCTTCAACTGATCAAACCGGCCCCCCGCACAGAATTCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 58 | 1260 | + | No |
Chemistry : DDE
ORF sequence :
MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFP
DFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLW
IEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
DFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLW
IEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN
Blast result :
Comments
98% aa homologous with ISRm3.
References
1] Freiberg, C., Fellay, R., Bairoch, A. Broughton, W.J., Rosenthal, A. and Perret, X. (1997) Nature 387 (6631), 394-401.
2] Freiberg, C. Direct submission. GenBank.
2] Freiberg, C. Direct submission. GenBank.