ISNGR8

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform ISRm3Synonym(s) NGRIS-34
Accession numberTranspositionOriginHost
AE000091 ND Rhizobium sp
Rhizobium sp NGR234
Rhizobium sp NGR234 plasmid pNGR234a
DNA section
IS Length : 1298 bp

Ends


IR Length : 29

IRL : GGGACTGTCAGGAATTCTGTGCGGGGGGCCATGATGATGAAAAGGAGCGA
IRR : GGGACTGTCAGGAATTCTGTGCGGGGGGCCGGTTTGATCAGTTGAAGAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGGTGATAGTCTTGCACCCATATGACG9

DNA sequence

GGGACTGTCAGGAATTCTGTGCGGGGGGCCATGATGATGAAAAGGAGCGAATCATCACATGGCTATCGAAAAAGAACTTCTGGACCAGCTTCTCGCCGGT
CGTGATCCATCCGAGGTTTTCGGCAAGGACGGGTTGCTGGACGATCTGAAGAAAGCGCTCTCGGAGCGCATCTTAAATGCGGAGCTCGACGAGCATCTTG
ACGTCGAGCGTAGCGAGGGAACAGCCGCCAACCGCCGCAATGGCTCTTCGAAGAAGACGGTTTTGACTGGGACGTCGAAAATGACGCTCACCATCCCGCG
CGATCGGGCCGGCACGTTCGACCCGAAACTGATCGCGAGATATCAGCGCCGCTTTCCCGATTTCGACGACAAGATCATTTCCATGTATGCCCGCGGCATG
ACGGTGCGCGAGATCCAGGGCCATCTCGAAGACATCTACGGCATCGACGTGTCGCCGGACCTGATTTCGGCGGTGACAGACCAGGTTCTGGAAGCCGTTG
GGGAATGGCAGAATAGGCCGCTCGAGCTTTGCTATCCACTCGTGTTCTTCGATGCCATCCGGGTCAAGATCCGGGACGAAGGTTTCGTTCGCAACAAGGC
GGTCTATGTTGCGCTCGCCGTTCTGGCGGACGGTACCAAGGAAATCCTCGGGCTCTGGATCGAGCAGACGGAAGGGGCAAAGTTCTGGCTTCGGGTGATG
AACGAACTGAAGAGCCGCGGCTGCCAGGACATCCTGATCGCCGTGGTCGACGGCCTGAAGGGTTTCCCCGATGCCATCACCGCCGTCTTTCCCCAAACGA
TCGTGCAGACCTGCATTGTCCATCTGATCCGGCATTCCCTGGAATTCGTGTCCTACAAGGATAGAAAGCCCGTCGTGCCGGCGTTGAGAGCCATTTACCG
TGCTCGGGATGCGGAGGCCGGCCTGAAGGCGCTGGAGGCCTTCGAGGAGGGTTATTGGGGTCAGAAATACCCTGCCATCTCTCAGAGCTGGCGGCGCAAT
TGGGAACACGTCGTTCCCTTCTTCGCTTTCCCGGAAGGCGTCCGCCGCATCATTTATACCACGAACGCCATAGAGGCCTTGAACTCGAAGCTTCGCCGAG
CTGTGCGCTCGCGCGGCCATTTCCCTGGTGACGAAGCCGCGATGAAGCTGTTATATCTGGTTCTCAATAACGCCGCCGAGCAATGGAAGCGCGCGCCGCG
GGAATGGGTTGAGGCAAAGACACAGTTTGCCGTTATCTTCGGCGAACGGTTCTTCAACTGATCAAACCGGCCCCCCGCACAGAATTCCTGACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa581260+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAIEKELLDQLLAGRDPSEVFGKDGLLDDLKKALSERILNAELDEHLDVERSEGTAANRRNGSSKKTVLTGTSKMTLTIPRDRAGTFDPKLIARYQRRFP
DFDDKIISMYARGMTVREIQGHLEDIYGIDVSPDLISAVTDQVLEAVGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGTKEILGLW
IEQTEGAKFWLRVMNELKSRGCQDILIAVVDGLKGFPDAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEAGLKALEAFEEGYW
GQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEAKTQFAVIFGERFFN

 

Blast result :
Comments
98% aa homologous with ISRm3.
References
1] Freiberg, C., Fellay, R., Bairoch, A. Broughton, W.J., Rosenthal, A. and Perret, X. (1997) Nature 387 (6631), 394-401.
2] Freiberg, C. Direct submission. GenBank.