ISMk1

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
L11041 ND Mycobacterium kansasii
Mycobacterium kansasii
DNA section
IS Length : 947 bp

Ends


IR Length :

IRL : TAGCCCGGATGTTTCGTGGGGTTGACGTGGTGGCCTGATCGGGTCGGATT
IRR : CTAACACCGCCGCCGACCACAAAACGGTCCTCCGTGCGCGCTGGAGCAAT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TAGCCCGGATGTTTCGTGGGGTTGACGTGGTGGCCTGATCGGGTCGGATTGTGGTTTTGGATCTTGATTTTCGGTTGGGGGGTGCGGTGGTGGCCCGGGT
CAGCGGCTTCTGCGGGGTTCCTTGGGCCCGGGGTGGTCCTTTCTTGGGTCGTGGGACGGTTGGGTAGTTGGTCAGCCGGGTTGCAGGCGGGCCAACGCGG
TGGTCAACACGTCGGCCCAGGGTGCGTGCGCGGCGAGGCGCAGCCGGGTTCGGCGGGCGTGGCGGGCCAGGCGGCCGGCGATCGAAAACAGCCGCAGCCG
TAGTCGTTTGGGTTCCCAGCGCCGCGCCGGGTGCTCCTCGAAGGCCAGCATTTGGCACCAGGCGGTCAGCTCCATGGCCAGCTGCACCAATGCGCACCAG
ATCCGGTTTTGGTCGAATCCGTGCAGGGGGAGGTTGGCCAGGCCGGTGTCTTTGGCGACCCGGATGCGGTTCTTCGCAGCGGGCGCGGCGGCGATGGCGC
AGTTCGAGATCGGGCAGCTGCCCACGGGTGGTGTTGGTGACGAACGCGGTCAGCCGTAACCCGTCGCGGTCGGTGAAACGTAGCTGGGCGCCCGGATGAG
GGCGTTCTTTGCGCACGATCAGCCGCATCCCCGCGGGCCAGTCCGACAGGTCAACGACCCCGGTTGCCTCGGTGACCCACGCCCCGTCACGGACCTGCCC
ATCAGCGTCGTAGGCCGGGGTCCACGCCGTCTGGGGAATCGCGTCGATGCCGGTGGCCATCGTCTCGGTGAGGGCAAATCCCAGCGAGTAGGACAGCCGG
CGCGCGCTCAGGTAGTTGAGGAATTCGTGGGTGGCCCCGGCGGCGTCGGTGCGCACCAGAACTTTCTTGCCGACCCGATAGCCGACCTGAAAGGGCAATT
GCTCCAGCGCGCACGGAGGACCGTTTTGTGGTCGGCGGCGGTGTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
856 bp285 aa92947+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTDAAGATHEFLNYLSARRLSYSLGFALTETMATGIDAIPQTAWTPAYDADGQVRDGAWVTEATGVVDLSDWPAGMRLIVRKERPHPGAQLRFTDRDGLR
LTAFVTNTTRGQLPDLELRHRRRARCEEPHPGRQRHRPGQPPPARIRPKPDLVRIGAAGHGADRLVPNAGLRGAPGAALGTQTTTAAAVFDRRPPGPPRP
PNPAAPRRARTLGRRVDHRVGPPATRLTNYPTVPRPKKGPPRAQGTPQKPLTRATTAPPNRKSRSKTTIRPDQATTSTPRNIRA

 

Blast result :
Comments
Note that there is no stop codon at the end of ISMk1 largest ORF, considered here as its putative transposase.
References
1] Yang, M., Ross, B.C., and Dwyer, B. (1993) J. Clin. Microbiol. 31, 2074-2079
2] Chandler, M. (1993) Personal communication.