ISLh1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
X81979 ND Lactobacillus helveticus
Lactobacillus helveticus ATCC15009 plasmid pLH3
DNA section
IS Length : 962 bp

Ends


IR Length : 32/35

IRL : ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGA
IRR : ACGCGTGGTGCTAGTTAAATCGTTCTAGACAATAAGCCAAATTATAAGCT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGACTAGACTCAAGTTGTAGTATCAAAAAGAAAAGAGTCTGATCTGATTGAAC
TGCCTTAAGCTTAAGCGTTTTAGCCACCATTTACAAGTTAGTTTTAAAGATTTAGTGATAATTTGTCGGCACTGGTATCGTTTGTATGCACCGGCTGAGT
TTACTCATCGGCGAAATATTGATCAAAGTAAAACTACGGACAGTCTGATTTTGGCTTTACTTATCTGGCAAGCTAAGACAGGAATTGAATCACAAAGAAG
ATTCTGTGAATGTTTCAATTGTTTATCACACTCACGTTTTAATCGACGTTCACGTCAGCTATTGCAATTGATTTATCAGATACGGCAAGAAATGAATAAA
AAGGTTGACCTGAATGGACAGTTCTTGATCATTGACAGCTTTCCGGCACCTGTTTGCCAACCAATTCGCAACTATCGTGCTAAAATTTTTGGCGGTTATG
CCAACATTGGTTATAAGGCCACCAAGAAAATTTACTTTTATGGTTTCAAAGTTCATGCCATTGTTAGCGATGACGGTTACATTCTTGATTATGTCGTAAC
AAAAGCATCAGTTCATGATGCCAAAGAGACAGTTGAACTGATGGAAAATACCCATCCATCTAATTACTATCTTCTTGGCGACGAAGGCTATTTAGGCAAA
GAACTGCATCAACAGCTAAAACAAATGGGTTATGAACTTTGGACACCATATCGTAAAAATATGACAGGAGCTAAAAAGCACAATGATCATCAATTGATGG
CTATTCGCAGAACAATTGAAAGCGACTTTTCGCTTCTGACCTATTACAATGCCGAGAACAATCGAGCACGTAGTCTGATAGGCTTTCAAAGCCGGTTAGA
AATTGCAATTTTAGCTTATAATTTGGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
816 bp271 aa137952+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSFKDLVIICRHWYRLYAPAEFTHRRNIDQSKTTDSLILALLIWQAKTGIESQRRFCECFNCLSHSRFNRRSRQLLQLIYQIRQEMNKKVDLNGQFLIID
SFPAPVCQPIRNYRAKIFGGYANIGYKATKKIYFYGFKVHAIVSDDGYILDYVVTKASVHDAKETVELMENTHPSNYYLLGDEGYLGKELHQQLKQMGYE
LWTPYRKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAYCLERFN

 

Blast result :
Comments
This element was picked up by BLAST using IS982 ORF as probe. ISLh1 is one of the two ORFs present in the small plasmid pLH3 (3,414 bp).
References
1] Pridmore, R.D., Stefanova, T., and Mollet, B. (1994) FEMS Microbiol. Lett. 124, 301-306.