ISLh1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
X81979 | ND | Lactobacillus helveticus | Lactobacillus helveticus ATCC15009 plasmid pLH3 |
DNA section
IS Length : 962 bp
Ends
IR Length : 32/35
IRL : ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGA
IRR : ACGCGTGGTGCTAGTTAAATCGTTCTAGACAATAAGCCAAATTATAAGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAATAAAAAAGTCCAATCGGACTAGACTCAAGTTGTAGTATCAAAAAGAAAAGAGTCTGATCTGATTGAAC
TGCCTTAAGCTTAAGCGTTTTAGCCACCATTTACAAGTTAGTTTTAAAGATTTAGTGATAATTTGTCGGCACTGGTATCGTTTGTATGCACCGGCTGAGT
TTACTCATCGGCGAAATATTGATCAAAGTAAAACTACGGACAGTCTGATTTTGGCTTTACTTATCTGGCAAGCTAAGACAGGAATTGAATCACAAAGAAG
ATTCTGTGAATGTTTCAATTGTTTATCACACTCACGTTTTAATCGACGTTCACGTCAGCTATTGCAATTGATTTATCAGATACGGCAAGAAATGAATAAA
AAGGTTGACCTGAATGGACAGTTCTTGATCATTGACAGCTTTCCGGCACCTGTTTGCCAACCAATTCGCAACTATCGTGCTAAAATTTTTGGCGGTTATG
CCAACATTGGTTATAAGGCCACCAAGAAAATTTACTTTTATGGTTTCAAAGTTCATGCCATTGTTAGCGATGACGGTTACATTCTTGATTATGTCGTAAC
AAAAGCATCAGTTCATGATGCCAAAGAGACAGTTGAACTGATGGAAAATACCCATCCATCTAATTACTATCTTCTTGGCGACGAAGGCTATTTAGGCAAA
GAACTGCATCAACAGCTAAAACAAATGGGTTATGAACTTTGGACACCATATCGTAAAAATATGACAGGAGCTAAAAAGCACAATGATCATCAATTGATGG
CTATTCGCAGAACAATTGAAAGCGACTTTTCGCTTCTGACCTATTACAATGCCGAGAACAATCGAGCACGTAGTCTGATAGGCTTTCAAAGCCGGTTAGA
AATTGCAATTTTAGCTTATAATTTGGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGT
TGCCTTAAGCTTAAGCGTTTTAGCCACCATTTACAAGTTAGTTTTAAAGATTTAGTGATAATTTGTCGGCACTGGTATCGTTTGTATGCACCGGCTGAGT
TTACTCATCGGCGAAATATTGATCAAAGTAAAACTACGGACAGTCTGATTTTGGCTTTACTTATCTGGCAAGCTAAGACAGGAATTGAATCACAAAGAAG
ATTCTGTGAATGTTTCAATTGTTTATCACACTCACGTTTTAATCGACGTTCACGTCAGCTATTGCAATTGATTTATCAGATACGGCAAGAAATGAATAAA
AAGGTTGACCTGAATGGACAGTTCTTGATCATTGACAGCTTTCCGGCACCTGTTTGCCAACCAATTCGCAACTATCGTGCTAAAATTTTTGGCGGTTATG
CCAACATTGGTTATAAGGCCACCAAGAAAATTTACTTTTATGGTTTCAAAGTTCATGCCATTGTTAGCGATGACGGTTACATTCTTGATTATGTCGTAAC
AAAAGCATCAGTTCATGATGCCAAAGAGACAGTTGAACTGATGGAAAATACCCATCCATCTAATTACTATCTTCTTGGCGACGAAGGCTATTTAGGCAAA
GAACTGCATCAACAGCTAAAACAAATGGGTTATGAACTTTGGACACCATATCGTAAAAATATGACAGGAGCTAAAAAGCACAATGATCATCAATTGATGG
CTATTCGCAGAACAATTGAAAGCGACTTTTCGCTTCTGACCTATTACAATGCCGAGAACAATCGAGCACGTAGTCTGATAGGCTTTCAAAGCCGGTTAGA
AATTGCAATTTTAGCTTATAATTTGGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
816 bp | 271 aa | 137 | 952 | + | No |
Chemistry : DDE
ORF sequence :
MSFKDLVIICRHWYRLYAPAEFTHRRNIDQSKTTDSLILALLIWQAKTGIESQRRFCECFNCLSHSRFNRRSRQLLQLIYQIRQEMNKKVDLNGQFLIID
SFPAPVCQPIRNYRAKIFGGYANIGYKATKKIYFYGFKVHAIVSDDGYILDYVVTKASVHDAKETVELMENTHPSNYYLLGDEGYLGKELHQQLKQMGYE
LWTPYRKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAYCLERFN
SFPAPVCQPIRNYRAKIFGGYANIGYKATKKIYFYGFKVHAIVSDDGYILDYVVTKASVHDAKETVELMENTHPSNYYLLGDEGYLGKELHQQLKQMGYE
LWTPYRKNMTGAKKHNDHQLMAIRRTIESDFSLLTYYNAENNRARSLIGFQSRLEIAILAYNLAYCLERFN
Blast result :
Comments
This element was picked up by BLAST using IS982 ORF as probe. ISLh1 is one of the two ORFs present in the small plasmid pLH3 (3,414 bp).
References
1] Pridmore, R.D., Stefanova, T., and Mollet, B. (1994) FEMS Microbiol. Lett. 124, 301-306.