ISLdl2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ344622 ND Lactobacillus delbrueckii
Lactobacillus delbrueckii
DNA section
IS Length : 1367 bp

Ends


IR Length : 6/8

IRL : GGAACTGTATAATTTTATGTGTAAGGATGAACAGTTCCTTAAACTAAATT
IRR : GACACTGTCAATTCTTTTGTGTAAATTAAATCTTTCCGATAGGTTGATTC

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNTCAAGAAANNNNNNNNNN8

DNA sequence

GGAACTGTATAATTTTATGTGTAAGGATGAACAGTTCCTTAAACTAAATTCCAATTGGGTATAAAAAAAGGGACTCCCTTTCCGTATAATTGATTTGAAC
ACTATCAATACGAAAGGGAATCCCCTATGACTGATTTTAACAAAGAATGCCTCAATGCGCTATTGAACAAAGAGAAATTCGATGAATTCATGCGTACTCA
GCTTGAAGAAGGGCTCGATCAACTCCTAGAAAGCGAATTGACTGCCTTTCTTGGTTATGATCCCTATGCTCGAGAGGGTTGGAACTCTGGAAACTCTAGA
AACGGTAGCTACTTTAGACAAGTTAAAACTCAATTCGGACCGATCAAAGTTCAAGTTCCTCGGGACAGAAAAGGTGAGTTTCACCAACATACTCTCCCAG
CATACGGCCAACACACTGTACCGCTAGAATCAACCGTGATTCAGCTCTATTCACATGGCGTAACGACCCGGGAGATCTCTGATTTGATTGAGAAAATGTA
TGGCAGCTATTACTCAGCCGGCACTGTCTCCAACATCTCTAAGCAGGTTGCCAGCCAGGTCGAAAGCTATCACCAACGTCAGCTGAGCGACAAGTTCTTC
TGCGTGTATCTCGACGCCACTTACATTCCTCTGCGTAGAGATACGTACCAGCGTGAGGCAGTCTATGTGGCTGTTGGGATTAAGCCTAATGGCCATAAGG
AGATCATTGATTATCGTATTGCCCCGGTGGAGAATATCGAAATTTGGGGTGAAATGATTTCCAACTTCAAGGAACGCGGCCTTGAGCAGGTTGAGCTATT
CCTATCAGATGGGTTTGTAGGCATTAAAGACATGCTAAAGCAGTATTACCCAAAATCTAAATTCCAACGTTGCCTAGTTCATGTCATGCGAAATATCAAG
GGAAAAGTCCGTGTAAGCGATCGTAAAGAGGCTCTGGACGACTTCAAGCAAGTTCATAAGCAATCTAGCTTAAAAGAGGCAGAAACGGTTCTCCACGCTT
TCTATGACAAATACGACTCAAAATACTCAAGCATGATCAAGAATCTGCAGAAGATTGAGGAAGACCTGCTGGTCTTTTACCAGTCCCCTAAGCAGATTCG
GCCCTCGATCTACTCAACGAACATGATCGAGTCGATAAACAACATGATCAAACGCAAGACAAAGCCAAAGTCAGAATTTCCAACTGAAGAGTCCCTAGAC
AACTTCTTAGGTGTACAGGCTATCGGCTACAACGACCGGAATGCCAATCGGACTCATAAAGGCTTTGGTCAGGTGACAGACACGTTGGAATCATACTTCG
ATTAAAACATAATTAAAGAATCAACCTATCGGAAAGATTTAATTTACACAAAAGAATTGACAGTGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa1271305+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDFNKECLNALLNKEKFDEFMRTQLEEGLDQLLESELTAFLGYDPYAREGWNSGNSRNGSYFRQVKTQFGPIKVQVPRDRKGEFHQHTLPAYGQHTVPL
ESTVIQLYSHGVTTREISDLIEKMYGSYYSAGTVSNISKQVASQVESYHQRQLSDKFFCVYLDATYIPLRRDTYQREAVYVAVGIKPNGHKEIIDYRIAP
VENIEIWGEMISNFKERGLEQVELFLSDGFVGIKDMLKQYYPKSKFQRCLVHVMRNIKGKVRVSDRKEALDDFKQVHKQSSLKEAETVLHAFYDKYDSKY
SSMIKNLQKIEEDLLVFYQSPKQIRPSIYSTNMIESINNMIKRKTKPKSEFPTEESLDNFLGVQAIGYNDRNANRTHKGFGQVTDTLESYFD

 

Blast result :
Comments
ISLdl2 is 83% aa similar to IS1201
References
1] Ravin,V. (2001) Direct submission GenBank