ISLdl2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ344622 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii |
DNA section
IS Length : 1367 bp
Ends
IR Length : 6/8
IRL : GGAACTGTATAATTTTATGTGTAAGGATGAACAGTTCCTTAAACTAAATT
IRR : GACACTGTCAATTCTTTTGTGTAAATTAAATCTTTCCGATAGGTTGATTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | TCAAGAAA | NNNNNNNNNN | 8 |
DNA sequence
GGAACTGTATAATTTTATGTGTAAGGATGAACAGTTCCTTAAACTAAATTCCAATTGGGTATAAAAAAAGGGACTCCCTTTCCGTATAATTGATTTGAAC
ACTATCAATACGAAAGGGAATCCCCTATGACTGATTTTAACAAAGAATGCCTCAATGCGCTATTGAACAAAGAGAAATTCGATGAATTCATGCGTACTCA
GCTTGAAGAAGGGCTCGATCAACTCCTAGAAAGCGAATTGACTGCCTTTCTTGGTTATGATCCCTATGCTCGAGAGGGTTGGAACTCTGGAAACTCTAGA
AACGGTAGCTACTTTAGACAAGTTAAAACTCAATTCGGACCGATCAAAGTTCAAGTTCCTCGGGACAGAAAAGGTGAGTTTCACCAACATACTCTCCCAG
CATACGGCCAACACACTGTACCGCTAGAATCAACCGTGATTCAGCTCTATTCACATGGCGTAACGACCCGGGAGATCTCTGATTTGATTGAGAAAATGTA
TGGCAGCTATTACTCAGCCGGCACTGTCTCCAACATCTCTAAGCAGGTTGCCAGCCAGGTCGAAAGCTATCACCAACGTCAGCTGAGCGACAAGTTCTTC
TGCGTGTATCTCGACGCCACTTACATTCCTCTGCGTAGAGATACGTACCAGCGTGAGGCAGTCTATGTGGCTGTTGGGATTAAGCCTAATGGCCATAAGG
AGATCATTGATTATCGTATTGCCCCGGTGGAGAATATCGAAATTTGGGGTGAAATGATTTCCAACTTCAAGGAACGCGGCCTTGAGCAGGTTGAGCTATT
CCTATCAGATGGGTTTGTAGGCATTAAAGACATGCTAAAGCAGTATTACCCAAAATCTAAATTCCAACGTTGCCTAGTTCATGTCATGCGAAATATCAAG
GGAAAAGTCCGTGTAAGCGATCGTAAAGAGGCTCTGGACGACTTCAAGCAAGTTCATAAGCAATCTAGCTTAAAAGAGGCAGAAACGGTTCTCCACGCTT
TCTATGACAAATACGACTCAAAATACTCAAGCATGATCAAGAATCTGCAGAAGATTGAGGAAGACCTGCTGGTCTTTTACCAGTCCCCTAAGCAGATTCG
GCCCTCGATCTACTCAACGAACATGATCGAGTCGATAAACAACATGATCAAACGCAAGACAAAGCCAAAGTCAGAATTTCCAACTGAAGAGTCCCTAGAC
AACTTCTTAGGTGTACAGGCTATCGGCTACAACGACCGGAATGCCAATCGGACTCATAAAGGCTTTGGTCAGGTGACAGACACGTTGGAATCATACTTCG
ATTAAAACATAATTAAAGAATCAACCTATCGGAAAGATTTAATTTACACAAAAGAATTGACAGTGTC
ACTATCAATACGAAAGGGAATCCCCTATGACTGATTTTAACAAAGAATGCCTCAATGCGCTATTGAACAAAGAGAAATTCGATGAATTCATGCGTACTCA
GCTTGAAGAAGGGCTCGATCAACTCCTAGAAAGCGAATTGACTGCCTTTCTTGGTTATGATCCCTATGCTCGAGAGGGTTGGAACTCTGGAAACTCTAGA
AACGGTAGCTACTTTAGACAAGTTAAAACTCAATTCGGACCGATCAAAGTTCAAGTTCCTCGGGACAGAAAAGGTGAGTTTCACCAACATACTCTCCCAG
CATACGGCCAACACACTGTACCGCTAGAATCAACCGTGATTCAGCTCTATTCACATGGCGTAACGACCCGGGAGATCTCTGATTTGATTGAGAAAATGTA
TGGCAGCTATTACTCAGCCGGCACTGTCTCCAACATCTCTAAGCAGGTTGCCAGCCAGGTCGAAAGCTATCACCAACGTCAGCTGAGCGACAAGTTCTTC
TGCGTGTATCTCGACGCCACTTACATTCCTCTGCGTAGAGATACGTACCAGCGTGAGGCAGTCTATGTGGCTGTTGGGATTAAGCCTAATGGCCATAAGG
AGATCATTGATTATCGTATTGCCCCGGTGGAGAATATCGAAATTTGGGGTGAAATGATTTCCAACTTCAAGGAACGCGGCCTTGAGCAGGTTGAGCTATT
CCTATCAGATGGGTTTGTAGGCATTAAAGACATGCTAAAGCAGTATTACCCAAAATCTAAATTCCAACGTTGCCTAGTTCATGTCATGCGAAATATCAAG
GGAAAAGTCCGTGTAAGCGATCGTAAAGAGGCTCTGGACGACTTCAAGCAAGTTCATAAGCAATCTAGCTTAAAAGAGGCAGAAACGGTTCTCCACGCTT
TCTATGACAAATACGACTCAAAATACTCAAGCATGATCAAGAATCTGCAGAAGATTGAGGAAGACCTGCTGGTCTTTTACCAGTCCCCTAAGCAGATTCG
GCCCTCGATCTACTCAACGAACATGATCGAGTCGATAAACAACATGATCAAACGCAAGACAAAGCCAAAGTCAGAATTTCCAACTGAAGAGTCCCTAGAC
AACTTCTTAGGTGTACAGGCTATCGGCTACAACGACCGGAATGCCAATCGGACTCATAAAGGCTTTGGTCAGGTGACAGACACGTTGGAATCATACTTCG
ATTAAAACATAATTAAAGAATCAACCTATCGGAAAGATTTAATTTACACAAAAGAATTGACAGTGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 127 | 1305 | + | No |
Chemistry : DDE
ORF sequence :
MTDFNKECLNALLNKEKFDEFMRTQLEEGLDQLLESELTAFLGYDPYAREGWNSGNSRNGSYFRQVKTQFGPIKVQVPRDRKGEFHQHTLPAYGQHTVPL
ESTVIQLYSHGVTTREISDLIEKMYGSYYSAGTVSNISKQVASQVESYHQRQLSDKFFCVYLDATYIPLRRDTYQREAVYVAVGIKPNGHKEIIDYRIAP
VENIEIWGEMISNFKERGLEQVELFLSDGFVGIKDMLKQYYPKSKFQRCLVHVMRNIKGKVRVSDRKEALDDFKQVHKQSSLKEAETVLHAFYDKYDSKY
SSMIKNLQKIEEDLLVFYQSPKQIRPSIYSTNMIESINNMIKRKTKPKSEFPTEESLDNFLGVQAIGYNDRNANRTHKGFGQVTDTLESYFD
ESTVIQLYSHGVTTREISDLIEKMYGSYYSAGTVSNISKQVASQVESYHQRQLSDKFFCVYLDATYIPLRRDTYQREAVYVAVGIKPNGHKEIIDYRIAP
VENIEIWGEMISNFKERGLEQVELFLSDGFVGIKDMLKQYYPKSKFQRCLVHVMRNIKGKVRVSDRKEALDDFKQVHKQSSLKEAETVLHAFYDKYDSKY
SSMIKNLQKIEEDLLVFYQSPKQIRPSIYSTNMIESINNMIKRKTKPKSEFPTEESLDNFLGVQAIGYNDRNANRTHKGFGQVTDTLESYFD
Blast result :
Comments
ISLdl2 is 83% aa similar to IS1201
References
1] Ravin,V. (2001) Direct submission GenBank