ISL7
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY040216 | ND | Lactobacillus delbrueckii | Lactobacillus delbrueckii subsp. bulgaricus |
DNA section
IS Length : 1239 bp
Ends
IR Length : 22/28
IRL : CGCCGATTGTAAAATTAAACTGAACACTGTTCCGATCCAGTAAGAAAAAT
IRR : CGCCAATTGCAAGAATAAATTGAACACTTACCATAACATCTGGCAGATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | ACTAAAAATATTT | NNNNNNNNNN | 13 |
DNA sequence
CGCCGATTGTAAAATTAAACTGAACACTGTTCCGATCCAGTAAGAAAAATCGTTTTCACTGGATTAGAGCACAAAAAATCCATTTCAACCATCTGGTAGA
ATATGAATTACCACAAACATTTCTAGAGAGGTTAAAATGGATCATTCATATTCTAACACTAAACCACACCAAAAGGGCAAGCACCTTACGCTAAACGACC
GGACTACAATCCAGGAGCTGCACTCTAAGGGCTACTCTAATCGTGCTATAGCTAGAGAACTTAACTGCTCACCAAGTACGGTCGGATATGAGCTCAAAAG
AGGCACAGTATCCCTGTATACCGGCAATGTGAAGCGGTATAAAGCTGTCGAAGGGCAAAGCACTTACGAACTACATAGAAGCGAATGCGGCCGCAAGAGC
TTGTTTCTTCGCAGACAAAAGTTCATCGACTATGTTTCCCACTGCTTCCATAATCGAGGCTGGTCTCTTGATGCTTGCGTGGGTTATGCTTTGGCCAAGG
GAATCTTCCAGAAGGATCAGGTCGTATCAACCAAAACTCTGTATAACTACGTTGACTTGGGCCTAATGGATATCAAGAACGGTGATCTTCCAGAGAAGGT
CAAGCGCAATACTAAGACTCGTCGTGTCCGTGTAAACAAGCGTATCCTGGGACGAAGCATCGATGAACGTAGTCCTAGAATCGAAAGCCGTAAGGACTTT
GGCCACTGGGAATGCGATCTGGTTCTTGGACACAAGACTAAGGACGACGATGTGTTGCTTACTCTGTGCGAACGAAAGACGCGTCAGTTCTTCATGATCA
AGATTGAGGATAAGACCTCAGCTAGCGTTATGAAGGCATTTGATAAGCTTCGAGAGTACTACGGATCCAAATGGAATCAAATCTTTAAGTCTATCACAAC
TGACAACGGATCTGAGTTCGCAGATCTATCCAATCTTGAGCAAGTTTCCAAGACTCTTGTGTACTACGCTCATCCTTATACATCCTGTGATAAAGGCAGC
GTAGAACGGCACAACGGTCTTATCAGACGCTATATTCCCAAGGGAGACCGTATGGATAAGTACAGTGTGGAAGATATTGCTAAGATCGAGGTATGGTGCA
ACTCTCTTCCTCGGAAGATCTTAAACTACAAGACTCCAGAAGAGTACTTTGACACCGAACTTGACCGCATTTACCGGCGTAGATAGTCAAAATCTGCCAG
ATGTTATGGTAAGTGTTCAATTTATTCTTGCAATTGGCG
ATATGAATTACCACAAACATTTCTAGAGAGGTTAAAATGGATCATTCATATTCTAACACTAAACCACACCAAAAGGGCAAGCACCTTACGCTAAACGACC
GGACTACAATCCAGGAGCTGCACTCTAAGGGCTACTCTAATCGTGCTATAGCTAGAGAACTTAACTGCTCACCAAGTACGGTCGGATATGAGCTCAAAAG
AGGCACAGTATCCCTGTATACCGGCAATGTGAAGCGGTATAAAGCTGTCGAAGGGCAAAGCACTTACGAACTACATAGAAGCGAATGCGGCCGCAAGAGC
TTGTTTCTTCGCAGACAAAAGTTCATCGACTATGTTTCCCACTGCTTCCATAATCGAGGCTGGTCTCTTGATGCTTGCGTGGGTTATGCTTTGGCCAAGG
GAATCTTCCAGAAGGATCAGGTCGTATCAACCAAAACTCTGTATAACTACGTTGACTTGGGCCTAATGGATATCAAGAACGGTGATCTTCCAGAGAAGGT
CAAGCGCAATACTAAGACTCGTCGTGTCCGTGTAAACAAGCGTATCCTGGGACGAAGCATCGATGAACGTAGTCCTAGAATCGAAAGCCGTAAGGACTTT
GGCCACTGGGAATGCGATCTGGTTCTTGGACACAAGACTAAGGACGACGATGTGTTGCTTACTCTGTGCGAACGAAAGACGCGTCAGTTCTTCATGATCA
AGATTGAGGATAAGACCTCAGCTAGCGTTATGAAGGCATTTGATAAGCTTCGAGAGTACTACGGATCCAAATGGAATCAAATCTTTAAGTCTATCACAAC
TGACAACGGATCTGAGTTCGCAGATCTATCCAATCTTGAGCAAGTTTCCAAGACTCTTGTGTACTACGCTCATCCTTATACATCCTGTGATAAAGGCAGC
GTAGAACGGCACAACGGTCTTATCAGACGCTATATTCCCAAGGGAGACCGTATGGATAAGTACAGTGTGGAAGATATTGCTAAGATCGAGGTATGGTGCA
ACTCTCTTCCTCGGAAGATCTTAAACTACAAGACTCCAGAAGAGTACTTTGACACCGAACTTGACCGCATTTACCGGCGTAGATAGTCAAAATCTGCCAG
ATGTTATGGTAAGTGTTCAATTTATTCTTGCAATTGGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 137 | 1186 | + | No |
Chemistry : DDE
ORF sequence :
MDHSYSNTKPHQKGKHLTLNDRTTIQELHSKGYSNRAIARELNCSPSTVGYELKRGTVSLYTGNVKRYKAVEGQSTYELHRSECGRKSLFLRRQKFIDYV
SHCFHNRGWSLDACVGYALAKGIFQKDQVVSTKTLYNYVDLGLMDIKNGDLPEKVKRNTKTRRVRVNKRILGRSIDERSPRIESRKDFGHWECDLVLGHK
TKDDDVLLTLCERKTRQFFMIKIEDKTSASVMKAFDKLREYYGSKWNQIFKSITTDNGSEFADLSNLEQVSKTLVYYAHPYTSCDKGSVERHNGLIRRYI
PKGDRMDKYSVEDIAKIEVWCNSLPRKILNYKTPEEYFDTELDRIYRRR
SHCFHNRGWSLDACVGYALAKGIFQKDQVVSTKTLYNYVDLGLMDIKNGDLPEKVKRNTKTRRVRVNKRILGRSIDERSPRIESRKDFGHWECDLVLGHK
TKDDDVLLTLCERKTRQFFMIKIEDKTSASVMKAFDKLREYYGSKWNQIFKSITTDNGSEFADLSNLEQVSKTLVYYAHPYTSCDKGSVERHNGLIRRYI
PKGDRMDKYSVEDIAKIEVWCNSLPRKILNYKTPEEYFDTELDRIYRRR
Blast result :
Comments
ISL7 is 65% aa similar to IS1470.
ISL7 was localized at the border of the operator O1 in L. delbruecki subsp. lactis N141.
ISL7 was localized at the border of the operator O1 in L. delbruecki subsp. lactis N141.
References
1] Lapierre,L., Mollet,B. and Germond,J.E. (2002) J. Bacteriol. 184 (4), 928-935