ISHpa1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF007429 | ND | Haemophilius paragallinarum | Haemophilius paragallinarum H-18 |
DNA section
IS Length : 719 bp
Ends
IR Length : 18
IRL : GGGGCTGTCCTAGATAACAACTAAAAAATCTATTTAGGTTAGAATGAACC
IRR : GGGGCTGTCCTAGATAACTAGACTAAACTCCCTTTAACCAATTGTTTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTATGGGGAA | TAATTATTT | ATCTAGAAAG | 9 |
DNA sequence
GGGGCTGTCCTAGATAACAACTAAAAAATCTATTTAGGTTAGAATGAACCAATGAGAAAAAGTCGTCTAAGTCAGCACAAACAAAATAAACTCATTGAGC
TATTTGTTGCAGGTGTTACTGCAAGGACAGCAGCAGAGTTAGTCAATGTAAACAAAACGACTGCCGCATATTACTTTCATCGTTTACGCCAACTCATCTA
TCAAAACAGCCTTCACTTAGAGATGTTTGAAGGTGAAATTGAAGCCGATGAAAGTTATTTTGGCGGTGCTCGCAAAGGCAAACGTGGTCGTGGTGCGGCA
GGGAAAATTGCGGTATTCGGGCTTCTCAAGCGCAATGGCAAGGTTTATACCGTTGCGGTTCCAAATACGCAATCTGCCACCTTGTTACCCATTATTCGGG
AGCAGGTAAAGCCTGATAGTATTGTTTACACCGATAATTATCGTAGTTATGACGTGCTTGATGTGAGTGAATTTAGTCATTTTCGTATCAATCACAGCAC
ACATTTTGCTGAAAATCATAACCACATTAACGGAATTGAGAATTTTTGGAGCCAAGCAAAACGCCATTTACGCAAATTTAATGGTATCCCAAAAGCGCAT
TTTGAGCTTTATTTAAAGGAATGTGAATGGCGTTTTAATTACAGCAACATAAAAAGTCAAATTTCTATTTTAAAACAATTGGTTAAAGGGAGTTTAGTCT
AGTTATCTAGGACAGCCCC
TATTTGTTGCAGGTGTTACTGCAAGGACAGCAGCAGAGTTAGTCAATGTAAACAAAACGACTGCCGCATATTACTTTCATCGTTTACGCCAACTCATCTA
TCAAAACAGCCTTCACTTAGAGATGTTTGAAGGTGAAATTGAAGCCGATGAAAGTTATTTTGGCGGTGCTCGCAAAGGCAAACGTGGTCGTGGTGCGGCA
GGGAAAATTGCGGTATTCGGGCTTCTCAAGCGCAATGGCAAGGTTTATACCGTTGCGGTTCCAAATACGCAATCTGCCACCTTGTTACCCATTATTCGGG
AGCAGGTAAAGCCTGATAGTATTGTTTACACCGATAATTATCGTAGTTATGACGTGCTTGATGTGAGTGAATTTAGTCATTTTCGTATCAATCACAGCAC
ACATTTTGCTGAAAATCATAACCACATTAACGGAATTGAGAATTTTTGGAGCCAAGCAAAACGCCATTTACGCAAATTTAATGGTATCCCAAAAGCGCAT
TTTGAGCTTTATTTAAAGGAATGTGAATGGCGTTTTAATTACAGCAACATAAAAAGTCAAATTTCTATTTTAAAACAATTGGTTAAAGGGAGTTTAGTCT
AGTTATCTAGGACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
651 bp | 216 aa | 51 | 701 | + | No |
Chemistry : DDE
ORF sequence :
MRKSRLSQHKQNKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRQLIYQNSLHLEMFEGEIEADESYFGGARKGKRGRGAAGKIAVFGLLKRNGKVYT
VAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLDVSEFSHFRINHSTHFAENHNHINGIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNYSNI
KSQISILKQLVKGSLV
VAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLDVSEFSHFRINHSTHFAENHNHINGIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNYSNI
KSQISILKQLVKGSLV
Blast result :
Comments
ISHp1 is 74% aa similar to IS1016-V6.
References
1] Wise,A.G., Glisson,J.R. and Jackwood,M.W.(1999) Direct submission GenBank.