ISHpa1

  • Family IS1595
  • Group IS1016
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF007429 ND Haemophilius paragallinarum
Haemophilius paragallinarum H-18
DNA section
IS Length : 719 bp

Ends


IR Length : 18

IRL : GGGGCTGTCCTAGATAACAACTAAAAAATCTATTTAGGTTAGAATGAACC
IRR : GGGGCTGTCCTAGATAACTAGACTAAACTCCCTTTAACCAATTGTTTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTATGGGGAATAATTATTTATCTAGAAAG9

DNA sequence

GGGGCTGTCCTAGATAACAACTAAAAAATCTATTTAGGTTAGAATGAACCAATGAGAAAAAGTCGTCTAAGTCAGCACAAACAAAATAAACTCATTGAGC
TATTTGTTGCAGGTGTTACTGCAAGGACAGCAGCAGAGTTAGTCAATGTAAACAAAACGACTGCCGCATATTACTTTCATCGTTTACGCCAACTCATCTA
TCAAAACAGCCTTCACTTAGAGATGTTTGAAGGTGAAATTGAAGCCGATGAAAGTTATTTTGGCGGTGCTCGCAAAGGCAAACGTGGTCGTGGTGCGGCA
GGGAAAATTGCGGTATTCGGGCTTCTCAAGCGCAATGGCAAGGTTTATACCGTTGCGGTTCCAAATACGCAATCTGCCACCTTGTTACCCATTATTCGGG
AGCAGGTAAAGCCTGATAGTATTGTTTACACCGATAATTATCGTAGTTATGACGTGCTTGATGTGAGTGAATTTAGTCATTTTCGTATCAATCACAGCAC
ACATTTTGCTGAAAATCATAACCACATTAACGGAATTGAGAATTTTTGGAGCCAAGCAAAACGCCATTTACGCAAATTTAATGGTATCCCAAAAGCGCAT
TTTGAGCTTTATTTAAAGGAATGTGAATGGCGTTTTAATTACAGCAACATAAAAAGTCAAATTTCTATTTTAAAACAATTGGTTAAAGGGAGTTTAGTCT
AGTTATCTAGGACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa51701+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKSRLSQHKQNKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRQLIYQNSLHLEMFEGEIEADESYFGGARKGKRGRGAAGKIAVFGLLKRNGKVYT
VAVPNTQSATLLPIIREQVKPDSIVYTDNYRSYDVLDVSEFSHFRINHSTHFAENHNHINGIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNYSNI
KSQISILKQLVKGSLV

 

Blast result :
Comments
ISHp1 is 74% aa similar to IS1016-V6.
References
1] Wise,A.G., Glisson,J.R. and Jackwood,M.W.(1999) Direct submission GenBank.