ISH9
- Family IS5
- Group ISH1
Isoform ISH28Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AF016485 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC100 Halobacterium sp. NRC-1 |
DNA section
IS Length : 938 bp
Ends
IR Length : 16
IRL : GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTG
IRR : GGCTCTGGTGAATCGCCAGAAGGCGTTTGATTTCACGGTGTGACGGCCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGCTCTGGTGAATCGCTGGACAGCGCCGGCTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAACCGCCGATGATCCATGTCGAAGATTTCCCGCTTCA
CGAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCGATTGTGTC
GCTGCACTGTCTGCGGGTGTACCTGGAGAAATCGTACCGGGAAACGCTTGATCTGCTGAGCGAGATGCCACACATACTGGCCGAGATCGGCCTCAACGAG
GCCGATCTCCCCGACCACTCGACGCTAGTGAAGGCGTTTGACAGACTCAAAACAGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CGAGCGGACACGCCGCCATCGACGCGACGTTCTTCGACCGCGAAACCGCCAGCAAGCACTACTGCCGTCGGACGAACTACCGCGTTCAGACGCTCAAAAC
CACCGCACTCGTCGATACAGAAACGCAGGCTATCCTCGACGTGCATTGCTCGACCGGGAAACCACACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGC
AACGCGGGCGACCTCGCCAGCCTCGCCGCTGACAAGGGCTACGATTGGATGGAACTCCGCAAGAAACTCAGGGAAGATGGCGTGAGACCGTTGATCAAGC
ATCGGATCTTCCGGCCCATCGACCACGCGCACAACGCGCGGGTCGATGGGCCTCGCTACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCGACGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAGCGTGGTTCCGCGAGTTTCGAGAAATCGTCTTGAAATGTGTCGTCCACAATATCAAGCGGGCCGTCACA
CCGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
CGAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTCGGTGGCCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCGATTGTGTC
GCTGCACTGTCTGCGGGTGTACCTGGAGAAATCGTACCGGGAAACGCTTGATCTGCTGAGCGAGATGCCACACATACTGGCCGAGATCGGCCTCAACGAG
GCCGATCTCCCCGACCACTCGACGCTAGTGAAGGCGTTTGACAGACTCAAAACAGCACTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CGAGCGGACACGCCGCCATCGACGCGACGTTCTTCGACCGCGAAACCGCCAGCAAGCACTACTGCCGTCGGACGAACTACCGCGTTCAGACGCTCAAAAC
CACCGCACTCGTCGATACAGAAACGCAGGCTATCCTCGACGTGCATTGCTCGACCGGGAAACCACACGACACACAGCTCGGCTGGCAGGTCGCCCGCCGC
AACGCGGGCGACCTCGCCAGCCTCGCCGCTGACAAGGGCTACGATTGGATGGAACTCCGCAAGAAACTCAGGGAAGATGGCGTGAGACCGTTGATCAAGC
ATCGGATCTTCCGGCCCATCGACCACGCGCACAACGCGCGGGTCGATGGGCCTCGCTACCGCCAACGAGCGATGTGTGAGACCGTCTTCTCGACGATCAA
GCGCACGCTCGGCGACGCCGTGCGTGCGCGAGCGTGGTTCCGCGAGTTTCGAGAAATCGTCTTGAAATGTGTCGTCCACAATATCAAGCGGGCCGTCACA
CCGTGAAATCAAACGCCTTCTGGCGATTCACCAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 828 bp | 275 aa | 78 | 905 | + | No |
Chemistry : DDE
ORF sequence :
MSKISRFTKKAVQLAKNAVGGRGEVAAPEGGGGFADYAIVSLHCLRVYLEKSYRETLDLLSEMPHILAEIGLNEADLPDHSTLVKAFDRLKTALWRVLLR
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLASLAADKGYDWMELRKKLRED
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREIVLKCVVHNIKRAVTP
LSAQLHDPSGHAAIDATFFDRETASKHYCRRTNYRVQTLKTTALVDTETQAILDVHCSTGKPHDTQLGWQVARRNAGDLASLAADKGYDWMELRKKLRED
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRAMCETVFSTIKRTLGDAVRARAWFREFREIVLKCVVHNIKRAVTP
Blast result :
Comments
Two copies are present in pNRC100 of Halobacterium sp. NRC-1 at coordinates 34456-35393;187996-188933.
97% aa homologous with ISH28.
97% aa homologous with ISH28.
References
1] Wailap, V. Ng., Stacy A. Ciufo, Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., Hall, B., Loretz, C., Seto, J., Slagel, J., Hood, L., and DasSarma, S. (1998) Genome Research 8, 1131-1141