ISH8B

  • Family IS4
  • Group ISH8
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF016485 ND Halobacterium sp.
Halobacterium sp. NRC-1 plasmid pNRC100
Halobacterium sp. NRC-1
DNA section
IS Length : 1403 bp

Ends


IR Length : 16

IRL : CATCCGTCTTTAGTTAGGAGACGAACCGCGTGACAGTGGCGGCTTATCGA
IRR : CATTCGTCTTTAGTTAAGACTCACACCTCGGTTGTGTAGCGGTAGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGTCACAGGGACAAAGCTTATTCTACA10
TGTAGAATAAGCTTTGTCCCCTGTGACACA10

DNA sequence

CATCCGTCTTTAGTTAGGAGACGAACCGCGTGACAGTGGCGGCTTATCGAGGCTACTTTTCGGAAGGAATGAGGAGGTGTCGAGTGTGCACAACGAAACC
TCCTCATCACGGATTATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAACGCGACCGCAAGC
TCCAGATTCCCGTCTTCGTCTGGGCATTCGTGTTCGGCTTCGCCGCAGGCGAACGCCGAACACTCGCAGGGTTTCGACGCAGCTACAACTCCACAGCTGA
CGAGCCGATCTCACCGGGTGGGTTCTATCAGCGGTTGACGCCGACGCTCGCGGAGTACTTCCGCGACCTCGTCGAGCACGGTCTCGACGAGGTCGCTGTT
CCCGACACTGTTGACGTTGACATCGACCGATTCAGTGATGTAATGATCGCTGATGGAACGGTGTTGCGGTTACACGAGTTTCTCGCTGATCAGTTCGAAG
CCCGCCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCCACTGAACAGACGATTGAACGGATCGACGTTACCGACGAGAAAGCACACGA
CAGCACGCTGTTCAAGACAGGGTCGTGGCTTGAGAACCGCCTCGTATTGTTCGACCTCGCGTACTTCAAGTACCGACGGTTTGCGCGGATCGACGAGAAC
GGCGGCTCCTTCGTGAGCCGGCTGAAACAGAACGCGAATCCGGTGATTACGGATGAATTACGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGCAAGC
AACTCCGTGATGTGCTCGACGATCTCGACCGGACGTACATCGATGTGGAAGTCGAAGTCGAGTTCAAGCGCGGGCCGTACAACGGGACGCGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTATACGTGACAAATCTGTCGCGAGAGGAGTTCTTTCCGGCGGAT
TTAGCGCAGATCTACCGGTGTCGGTGGGAAGTGGAGTTGCTGTTCCGTGAGTTGAAGACGCAGTACGACCTGGACGAGTTCGACACGAGCAACGAGCACG
TGGTGAAGATCTTGCTGTACGCAGCGTTGCTGTCACTGCTTGTGAGCCGTGATCTGTTGGATCTGGTCACCGAGCAGGCGGATGATGAGCTCGTGTTTCC
ACCGGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGCACCTCGGTTATTCGCCACCGCCGCTGTTGGAGCGG
CTGATCGAGGACGCACAGAAGATCCACAAGCAACGACCGATCTTACAAGAGACGCTCGCTACCGCTACACAACCGAGGTGTGAGTCTTAACTAAAGACGA
ATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1151389+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRLTTLFPSEFLEEHAEELGVVERDRKLQIPVFVWAFVFGFAAGERRTLAGFRRSYNSTADEPISPGGFYQRLTPTLAEYFRDLVEHGLDEVAVPDTVD
VDIDRFSDVMIADGTVLRLHEFLADQFEARHEEQAGAKLHLLHNATEQTIERIDVTDEKAHDSTLFKTGSWLENRLVLFDLAYFKYRRFARIDENGGSFV
SRLKQNANPVITDELREWRGRAIPLEGKQLRDVLDDLDRTYIDVEVEVEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYVTNLSREEFFPADLAQIY
RCRWEVELLFRELKTQYDLDEFDTSNEHVVKILLYAALLSLLVSRDLLDLVTEQADDELVFPPERWAATFRSHAQLILHELGEHLGYSPPPLLERLIEDA
QKIHKQRPILQETLATATQPRCES

 

Blast result :
Comments
Two copies are present in pNRC100 of Halobacterium sp. NRC-1 at coordinates 58502-59904 ; 163485-164887 (complement). 94% aa homologous with ISH8A.
References
1] Wailap, V. Ng., Stacy A. Ciufo, Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., Hall, B., Loretz, C., Seto, J., Slagel, J., Hood, L., and DasSarma, S. (1998) Genome Res. 8, 1131-1141