ISH8B
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF016485 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC100 Halobacterium sp. NRC-1 |
DNA section
IS Length : 1403 bp
Ends
IR Length : 16
IRL : CATCCGTCTTTAGTTAGGAGACGAACCGCGTGACAGTGGCGGCTTATCGA
IRR : CATTCGTCTTTAGTTAAGACTCACACCTCGGTTGTGTAGCGGTAGCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGTCACA | GGGACAAAGC | TTATTCTACA | 10 |
TGTAGAATAA | GCTTTGTCCC | CTGTGACACA | 10 |
DNA sequence
CATCCGTCTTTAGTTAGGAGACGAACCGCGTGACAGTGGCGGCTTATCGAGGCTACTTTTCGGAAGGAATGAGGAGGTGTCGAGTGTGCACAACGAAACC
TCCTCATCACGGATTATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAACGCGACCGCAAGC
TCCAGATTCCCGTCTTCGTCTGGGCATTCGTGTTCGGCTTCGCCGCAGGCGAACGCCGAACACTCGCAGGGTTTCGACGCAGCTACAACTCCACAGCTGA
CGAGCCGATCTCACCGGGTGGGTTCTATCAGCGGTTGACGCCGACGCTCGCGGAGTACTTCCGCGACCTCGTCGAGCACGGTCTCGACGAGGTCGCTGTT
CCCGACACTGTTGACGTTGACATCGACCGATTCAGTGATGTAATGATCGCTGATGGAACGGTGTTGCGGTTACACGAGTTTCTCGCTGATCAGTTCGAAG
CCCGCCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCCACTGAACAGACGATTGAACGGATCGACGTTACCGACGAGAAAGCACACGA
CAGCACGCTGTTCAAGACAGGGTCGTGGCTTGAGAACCGCCTCGTATTGTTCGACCTCGCGTACTTCAAGTACCGACGGTTTGCGCGGATCGACGAGAAC
GGCGGCTCCTTCGTGAGCCGGCTGAAACAGAACGCGAATCCGGTGATTACGGATGAATTACGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGCAAGC
AACTCCGTGATGTGCTCGACGATCTCGACCGGACGTACATCGATGTGGAAGTCGAAGTCGAGTTCAAGCGCGGGCCGTACAACGGGACGCGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTATACGTGACAAATCTGTCGCGAGAGGAGTTCTTTCCGGCGGAT
TTAGCGCAGATCTACCGGTGTCGGTGGGAAGTGGAGTTGCTGTTCCGTGAGTTGAAGACGCAGTACGACCTGGACGAGTTCGACACGAGCAACGAGCACG
TGGTGAAGATCTTGCTGTACGCAGCGTTGCTGTCACTGCTTGTGAGCCGTGATCTGTTGGATCTGGTCACCGAGCAGGCGGATGATGAGCTCGTGTTTCC
ACCGGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGCACCTCGGTTATTCGCCACCGCCGCTGTTGGAGCGG
CTGATCGAGGACGCACAGAAGATCCACAAGCAACGACCGATCTTACAAGAGACGCTCGCTACCGCTACACAACCGAGGTGTGAGTCTTAACTAAAGACGA
ATG
TCCTCATCACGGATTATGCGTCGGCTCACTACACTGTTTCCCTCCGAGTTCCTCGAAGAGCACGCCGAGGAACTCGGCGTGGTCGAACGCGACCGCAAGC
TCCAGATTCCCGTCTTCGTCTGGGCATTCGTGTTCGGCTTCGCCGCAGGCGAACGCCGAACACTCGCAGGGTTTCGACGCAGCTACAACTCCACAGCTGA
CGAGCCGATCTCACCGGGTGGGTTCTATCAGCGGTTGACGCCGACGCTCGCGGAGTACTTCCGCGACCTCGTCGAGCACGGTCTCGACGAGGTCGCTGTT
CCCGACACTGTTGACGTTGACATCGACCGATTCAGTGATGTAATGATCGCTGATGGAACGGTGTTGCGGTTACACGAGTTTCTCGCTGATCAGTTCGAAG
CCCGCCACGAGGAGCAGGCTGGAGCGAAGCTCCACCTGCTCCACAATGCCACTGAACAGACGATTGAACGGATCGACGTTACCGACGAGAAAGCACACGA
CAGCACGCTGTTCAAGACAGGGTCGTGGCTTGAGAACCGCCTCGTATTGTTCGACCTCGCGTACTTCAAGTACCGACGGTTTGCGCGGATCGACGAGAAC
GGCGGCTCCTTCGTGAGCCGGCTGAAACAGAACGCGAATCCGGTGATTACGGATGAATTACGGGAATGGCGCGGCCGCGCCATTCCCTTGGAGGGCAAGC
AACTCCGTGATGTGCTCGACGATCTCGACCGGACGTACATCGATGTGGAAGTCGAAGTCGAGTTCAAGCGCGGGCCGTACAACGGGACGCGGTCGCTGGA
TACGAAGCGGTTCCGCGTCGTCGGCGTCCGCGACGAGGACGCCGACGACTACCATCTATACGTGACAAATCTGTCGCGAGAGGAGTTCTTTCCGGCGGAT
TTAGCGCAGATCTACCGGTGTCGGTGGGAAGTGGAGTTGCTGTTCCGTGAGTTGAAGACGCAGTACGACCTGGACGAGTTCGACACGAGCAACGAGCACG
TGGTGAAGATCTTGCTGTACGCAGCGTTGCTGTCACTGCTTGTGAGCCGTGATCTGTTGGATCTGGTCACCGAGCAGGCGGATGATGAGCTCGTGTTTCC
ACCGGAACGCTGGGCGGCGACCTTCCGGTCGCACGCCCAGCTCATCCTCCACGAACTCGGTGAGCACCTCGGTTATTCGCCACCGCCGCTGTTGGAGCGG
CTGATCGAGGACGCACAGAAGATCCACAAGCAACGACCGATCTTACAAGAGACGCTCGCTACCGCTACACAACCGAGGTGTGAGTCTTAACTAAAGACGA
ATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 115 | 1389 | + | No |
Chemistry : DDE
ORF sequence :
MRRLTTLFPSEFLEEHAEELGVVERDRKLQIPVFVWAFVFGFAAGERRTLAGFRRSYNSTADEPISPGGFYQRLTPTLAEYFRDLVEHGLDEVAVPDTVD
VDIDRFSDVMIADGTVLRLHEFLADQFEARHEEQAGAKLHLLHNATEQTIERIDVTDEKAHDSTLFKTGSWLENRLVLFDLAYFKYRRFARIDENGGSFV
SRLKQNANPVITDELREWRGRAIPLEGKQLRDVLDDLDRTYIDVEVEVEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYVTNLSREEFFPADLAQIY
RCRWEVELLFRELKTQYDLDEFDTSNEHVVKILLYAALLSLLVSRDLLDLVTEQADDELVFPPERWAATFRSHAQLILHELGEHLGYSPPPLLERLIEDA
QKIHKQRPILQETLATATQPRCES
VDIDRFSDVMIADGTVLRLHEFLADQFEARHEEQAGAKLHLLHNATEQTIERIDVTDEKAHDSTLFKTGSWLENRLVLFDLAYFKYRRFARIDENGGSFV
SRLKQNANPVITDELREWRGRAIPLEGKQLRDVLDDLDRTYIDVEVEVEFKRGPYNGTRSLDTKRFRVVGVRDEDADDYHLYVTNLSREEFFPADLAQIY
RCRWEVELLFRELKTQYDLDEFDTSNEHVVKILLYAALLSLLVSRDLLDLVTEQADDELVFPPERWAATFRSHAQLILHELGEHLGYSPPPLLERLIEDA
QKIHKQRPILQETLATATQPRCES
Blast result :
Comments
Two copies are present in pNRC100 of Halobacterium sp. NRC-1 at coordinates 58502-59904 ; 163485-164887 (complement). 94% aa homologous with ISH8A.
References
1] Wailap, V. Ng., Stacy A. Ciufo, Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., Hall, B., Loretz, C., Seto, J., Slagel, J., Hood, L., and DasSarma, S. (1998) Genome Res. 8, 1131-1141