ISH7B

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform ISH7ASynonym(s)
Accession numberTranspositionOriginHost
AF016485 ND Halobacterium sp.
Halobacterium sp. NRC-1 plasmid pNRC100
Halobacterium salinarum R1
DNA section
IS Length : 2924 bp

Ends


IR Length : 14/19

IRL : GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTC
IRR : CTGATGTTGCGAAGATAAGTCCATAATGCATAGGCTTCACTGATATATGT

Insertion site


Left flankDirect repeatRight flankDR Length
CACCGCTTCGCACCCCGGAT0

DNA sequence

GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTCGCAGGACTGAGTGGCCTCGCGTACCCCTGCTCACAAGTGGATAGCCTGAT
TTTATCAGAATAATGGGAGAATTTGTTTCCGCTAGCAGGGCTCTGTTGAAATCCTCTTCTTTAGAGAATTGTTCCCGTGAATCTACTGCACACTACACGT
GCGAACAGAACACTTTTGGTCGCATTATCTGTGTTATCTAGTATGCCCCTCCACGACAATTTTGACTACTGGAGTCCCATTGCCGCTTTCGTCGCGCTGT
CGCTCTTCGTGATACTTGCGCTCGCACGGCCAGCACTTCCGGTGGCGCTTGCCCTTGCGCTCGGTGTCACCGTCTTCGTGGCCGGTATTTCTCCCGCCGT
CCGCGAGCGGCTCCCGTCCTATAACCGTCTTATCGGCGCCTATTGCGGTGTCTTCGGCCTTGCTAGATTCGCCAGCGAGGGATGGACCTCTGTGAGCGCG
GCATTAGTCTTGGTCGGTGTCGTCTCTGTCCTTGAACTCGCTTACGAGCGAATGACTGGGCGCTCCGCCGATATTGTTTAATTATTATCCGGTGTTGAGC
AGTCCTTAGCCTGTACTTATCGGTGTAACAGTATCGATAGAAGGGGAATGCGAACGGTTGGATGATACCCTCACTACCGGTAAGAGGTGTAGCGGATCAA
CGAATAGCGTACCCCCAGTAGGCGAATGCTTTTATGCCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAA
GTGGCTCGGTCCAACGAAGAATATCGAAAGTGCCAGCTATGAATCAACACCAGGGGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTC
GTCCGCGCGGCCTCATTCGATATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCA
CGTTAGAGGACCTCGTCACTGAAGTTCCCGCCTCGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTT
CCGCGCGCACGTCCTCCGATGCGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGCTGGGCTTC
AAAGACATTCCCGACCAGTCAACACTCTACCGCGCGTGGGACGACCGCCTCGAAGATGTCCACGACGCAGTGCGAGACGCCGCCGAGGTCGTCGTGGACA
TCGCCCGCTACCACGACATCCCCGCGCCCGAAACCGAGTTCCTCCCCGACCAGCCGACCGATACGGTGACGAACTCGAAGAGCAAGGACACGCTCGCCCG
CGAGAAAGCCCGTGAGGTCTGGAAGGGCGCGAAGCCCATCGTTGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTC
TGGGAGCAACAGTCCTACCTCGGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAG
GCGACTCCCACCGGTTGCAGACGAAGACGCTCGGCGTTGAGCACATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTTGCGCGAGCGAAATCGAA
GGACAAGATGGGGCGCAAGCAGATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTTGAACGCGATAGCAGCGGACAGAATCAGGAG
CCGTGGATTCTTGGCTACAAGGGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCC
CGGTTGTTCGTGGTCGGAAGCGAGCGGATATCGTAGACGATCTCCTCGAAGGCGCGACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGA
GTTCGCCCCGGACGGCGTCAAAGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATC
GCTAAGCTTGCCAGTGAAGACAAAGACTTCGATGTCATCGAGCAGGAGCGCTTGGACGCCGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGT
GGGAACGTGAGGACGAAGACAACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCGAGGACGTCGGCAACACGACGCCGCTCTCGGA
GGACCGCGACGGCGACTCGCCGCTGAGCAACCTTCTCAACGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCGTGCCC
TTTGAGACGAATCTCCCGTGGGTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCAGATACAAACGGCGTTGGG
GTATCGAGAACGGCTTCAAGAAACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCTTGCGTCCT
CTACAACTGCTGGCGACTTGTGGACATACTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCGGTGTCCTCGAACTCGTTCCTGACGTTC
GCCAAGAAAAGCTACGGCCTCGACCCGCCCGACTAACTCTCTCATTTCCTCTGGACTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACACCGATTTTC
CACTGGATTTGTGAGCGCTATCCGACAGGTTCCTCAGAAGCGCGTTCCGAGACTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATT
ATGGACTTATCTTCGCAACATCAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
351 bp116 aa231581+No
ORF function : Transposase
Description :

ORF sequence :

MLSSMPLHDNFDYWSPIAAFVALSLFVILALARPALPVALALALGVTVFVAGISPAVRERLPSYNRLIGAYCGVFGLARFASEGWTSVSAALVLVGVVSV
LELAYERMTGRSADIV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1815 bp604 aa9222736+No
ORF function : Transposase
Description :

ORF sequence :

MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPASYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQS
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPETEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVEHIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIEQERLDAGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFEDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTVPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD

 

Blast result :
Comments
ISH7B is 99% aa similar to ISH7A.
File updated the June 2 2010.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12:2489-2497
References
1] Wailap, V. Ng., Stacy A. Ciufo, Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., Hall, B., Loretz, C., Seto, J., Slagel, J., Hood, L., and DasSarma, S. (1998) Genome Res. 8, 1131-1141

2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346