ISH7B
- Family ISNCY
- Group
Isoform ISH7ASynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF016485 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC100
Halobacterium salinarum R1 |
DNA section
IS Length : 2924 bp
Ends
IR Length : 14/19
IRL : GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTC
IRR : CTGATGTTGCGAAGATAAGTCCATAATGCATAGGCTTCACTGATATATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACCGCTTCG | CACCCCGGAT | 0 |
DNA sequence
GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTCGCAGGACTGAGTGGCCTCGCGTACCCCTGCTCACAAGTGGATAGCCTGAT
TTTATCAGAATAATGGGAGAATTTGTTTCCGCTAGCAGGGCTCTGTTGAAATCCTCTTCTTTAGAGAATTGTTCCCGTGAATCTACTGCACACTACACGT
GCGAACAGAACACTTTTGGTCGCATTATCTGTGTTATCTAGTATGCCCCTCCACGACAATTTTGACTACTGGAGTCCCATTGCCGCTTTCGTCGCGCTGT
CGCTCTTCGTGATACTTGCGCTCGCACGGCCAGCACTTCCGGTGGCGCTTGCCCTTGCGCTCGGTGTCACCGTCTTCGTGGCCGGTATTTCTCCCGCCGT
CCGCGAGCGGCTCCCGTCCTATAACCGTCTTATCGGCGCCTATTGCGGTGTCTTCGGCCTTGCTAGATTCGCCAGCGAGGGATGGACCTCTGTGAGCGCG
GCATTAGTCTTGGTCGGTGTCGTCTCTGTCCTTGAACTCGCTTACGAGCGAATGACTGGGCGCTCCGCCGATATTGTTTAATTATTATCCGGTGTTGAGC
AGTCCTTAGCCTGTACTTATCGGTGTAACAGTATCGATAGAAGGGGAATGCGAACGGTTGGATGATACCCTCACTACCGGTAAGAGGTGTAGCGGATCAA
CGAATAGCGTACCCCCAGTAGGCGAATGCTTTTATGCCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAA
GTGGCTCGGTCCAACGAAGAATATCGAAAGTGCCAGCTATGAATCAACACCAGGGGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTC
GTCCGCGCGGCCTCATTCGATATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCA
CGTTAGAGGACCTCGTCACTGAAGTTCCCGCCTCGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTT
CCGCGCGCACGTCCTCCGATGCGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGCTGGGCTTC
AAAGACATTCCCGACCAGTCAACACTCTACCGCGCGTGGGACGACCGCCTCGAAGATGTCCACGACGCAGTGCGAGACGCCGCCGAGGTCGTCGTGGACA
TCGCCCGCTACCACGACATCCCCGCGCCCGAAACCGAGTTCCTCCCCGACCAGCCGACCGATACGGTGACGAACTCGAAGAGCAAGGACACGCTCGCCCG
CGAGAAAGCCCGTGAGGTCTGGAAGGGCGCGAAGCCCATCGTTGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTC
TGGGAGCAACAGTCCTACCTCGGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAG
GCGACTCCCACCGGTTGCAGACGAAGACGCTCGGCGTTGAGCACATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTTGCGCGAGCGAAATCGAA
GGACAAGATGGGGCGCAAGCAGATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTTGAACGCGATAGCAGCGGACAGAATCAGGAG
CCGTGGATTCTTGGCTACAAGGGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCC
CGGTTGTTCGTGGTCGGAAGCGAGCGGATATCGTAGACGATCTCCTCGAAGGCGCGACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGA
GTTCGCCCCGGACGGCGTCAAAGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATC
GCTAAGCTTGCCAGTGAAGACAAAGACTTCGATGTCATCGAGCAGGAGCGCTTGGACGCCGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGT
GGGAACGTGAGGACGAAGACAACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCGAGGACGTCGGCAACACGACGCCGCTCTCGGA
GGACCGCGACGGCGACTCGCCGCTGAGCAACCTTCTCAACGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCGTGCCC
TTTGAGACGAATCTCCCGTGGGTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCAGATACAAACGGCGTTGGG
GTATCGAGAACGGCTTCAAGAAACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCTTGCGTCCT
CTACAACTGCTGGCGACTTGTGGACATACTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCGGTGTCCTCGAACTCGTTCCTGACGTTC
GCCAAGAAAAGCTACGGCCTCGACCCGCCCGACTAACTCTCTCATTTCCTCTGGACTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACACCGATTTTC
CACTGGATTTGTGAGCGCTATCCGACAGGTTCCTCAGAAGCGCGTTCCGAGACTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATT
ATGGACTTATCTTCGCAACATCAG
TTTATCAGAATAATGGGAGAATTTGTTTCCGCTAGCAGGGCTCTGTTGAAATCCTCTTCTTTAGAGAATTGTTCCCGTGAATCTACTGCACACTACACGT
GCGAACAGAACACTTTTGGTCGCATTATCTGTGTTATCTAGTATGCCCCTCCACGACAATTTTGACTACTGGAGTCCCATTGCCGCTTTCGTCGCGCTGT
CGCTCTTCGTGATACTTGCGCTCGCACGGCCAGCACTTCCGGTGGCGCTTGCCCTTGCGCTCGGTGTCACCGTCTTCGTGGCCGGTATTTCTCCCGCCGT
CCGCGAGCGGCTCCCGTCCTATAACCGTCTTATCGGCGCCTATTGCGGTGTCTTCGGCCTTGCTAGATTCGCCAGCGAGGGATGGACCTCTGTGAGCGCG
GCATTAGTCTTGGTCGGTGTCGTCTCTGTCCTTGAACTCGCTTACGAGCGAATGACTGGGCGCTCCGCCGATATTGTTTAATTATTATCCGGTGTTGAGC
AGTCCTTAGCCTGTACTTATCGGTGTAACAGTATCGATAGAAGGGGAATGCGAACGGTTGGATGATACCCTCACTACCGGTAAGAGGTGTAGCGGATCAA
CGAATAGCGTACCCCCAGTAGGCGAATGCTTTTATGCCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAA
GTGGCTCGGTCCAACGAAGAATATCGAAAGTGCCAGCTATGAATCAACACCAGGGGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTC
GTCCGCGCGGCCTCATTCGATATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCA
CGTTAGAGGACCTCGTCACTGAAGTTCCCGCCTCGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTT
CCGCGCGCACGTCCTCCGATGCGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGCTGGGCTTC
AAAGACATTCCCGACCAGTCAACACTCTACCGCGCGTGGGACGACCGCCTCGAAGATGTCCACGACGCAGTGCGAGACGCCGCCGAGGTCGTCGTGGACA
TCGCCCGCTACCACGACATCCCCGCGCCCGAAACCGAGTTCCTCCCCGACCAGCCGACCGATACGGTGACGAACTCGAAGAGCAAGGACACGCTCGCCCG
CGAGAAAGCCCGTGAGGTCTGGAAGGGCGCGAAGCCCATCGTTGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTC
TGGGAGCAACAGTCCTACCTCGGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAG
GCGACTCCCACCGGTTGCAGACGAAGACGCTCGGCGTTGAGCACATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTTGCGCGAGCGAAATCGAA
GGACAAGATGGGGCGCAAGCAGATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTTGAACGCGATAGCAGCGGACAGAATCAGGAG
CCGTGGATTCTTGGCTACAAGGGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCC
CGGTTGTTCGTGGTCGGAAGCGAGCGGATATCGTAGACGATCTCCTCGAAGGCGCGACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGA
GTTCGCCCCGGACGGCGTCAAAGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATC
GCTAAGCTTGCCAGTGAAGACAAAGACTTCGATGTCATCGAGCAGGAGCGCTTGGACGCCGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGT
GGGAACGTGAGGACGAAGACAACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCGAGGACGTCGGCAACACGACGCCGCTCTCGGA
GGACCGCGACGGCGACTCGCCGCTGAGCAACCTTCTCAACGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCGTGCCC
TTTGAGACGAATCTCCCGTGGGTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCAGATACAAACGGCGTTGGG
GTATCGAGAACGGCTTCAAGAAACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCTTGCGTCCT
CTACAACTGCTGGCGACTTGTGGACATACTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCGGTGTCCTCGAACTCGTTCCTGACGTTC
GCCAAGAAAAGCTACGGCCTCGACCCGCCCGACTAACTCTCTCATTTCCTCTGGACTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACACCGATTTTC
CACTGGATTTGTGAGCGCTATCCGACAGGTTCCTCAGAAGCGCGTTCCGAGACTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATT
ATGGACTTATCTTCGCAACATCAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
351 bp | 116 aa | 231 | 581 | + | No |
Description :
ORF sequence :
MLSSMPLHDNFDYWSPIAAFVALSLFVILALARPALPVALALALGVTVFVAGISPAVRERLPSYNRLIGAYCGVFGLARFASEGWTSVSAALVLVGVVSV
LELAYERMTGRSADIV
LELAYERMTGRSADIV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1815 bp | 604 aa | 922 | 2736 | + | No |
Description :
ORF sequence :
MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPASYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQS
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPETEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVEHIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIEQERLDAGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFEDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTVPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPETEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVEHIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIEQERLDAGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFEDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTVPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD
Blast result :
Comments
ISH7B is 99% aa similar to ISH7A.
File updated the June 2 2010.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12:2489-2497
File updated the June 2 2010.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12:2489-2497
References
1] Wailap, V. Ng., Stacy A. Ciufo, Smith, T.M., Bumgarner, R.E., Baskin, D., Faust, J., Hall, B., Loretz, C., Seto, J., Slagel, J., Hood, L., and DasSarma, S. (1998) Genome Res. 8, 1131-1141
2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346
2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346