ISH7A

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform ISH7BSynonym(s)
Accession numberTranspositionOriginHost
AF016485 ND Halobacterium sp.
Halobacterium sp. NRC-1 plasmid pNRC200
Halobacterium sp. NRC-1 plasmid pNRC100
Halobacterium salinarum R1 plasmid pHS1
DNA section
IS Length : 3302 bp

Ends


IR Length : 14/19

IRL : GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTC
IRR : CTGATGTTGCGAAGATAGGTCCATGATGCATAGGCTTCACTGATATATGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGGAGCTGCGCTTCGAAT0

DNA sequence

GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTCGCAGGACTGAATGGTCTCGCATACCCCTGCTCACAAGTGGATCGCCCGAT
TTTACCAGAACAATGGGAAAATTTGTTTCCGCTAGCAGGAAACAGACTTCGTTTGTTCAACCAAATTGCGTTAAATCAGTTGATCAGTAGATGTGCATAC
TGAACGACTCAATCACTATCGTAGGAAAAAATATCTTCTATCGAACAATCGAAATATATTGCGAGTTTGAACGCAAGTTCCAGAGATGGGTCATATCTCT
CTGCTTCAAGTGCGTTAATGGTCTGTCGAGTAACTCCAACCTCTTTCGCAAGGTCCTCTTGCGTTAGGTCGTGCTTCGCTCGATAGACCTTTAATTCGTT
CTCCATGTCTCACTCCACGTATCTGTAGTAGACGAAGTATAGACCGTAACATGCCAGTCCAATCCACACGTAGATACTGGTTGCACTGTCTTCCGGGAAG
ATACTGAACGCCATATCAACCATTATTACAGACATCAAAATCCAAAACGAGTTGATACCAACTTTGCCATACAACTGCTGGGTTCGTTCGTCGCCCAGTG
CCTTTCGTTCCCGGCCCGCAGAAACTGCTCGATAGCCAAAGAATACGAGAATTCCGGCTGGAACGAGTCCACCAAGATAGCTGATTGGTGAGAGTTCGTA
GTACTGGACTGTTGCAGCAGTCACGCCAAATGTGAACACTGCTCCGACGAGCATCAGGTATCCGTTGCGTTTCTGGCGCTGGATGTTCTCGGGGAGTTCG
CTCATAGTATCACTGGTGAATCTTGCTTTGAGTTCACTTCTTGAGTAGCGTCCCTCTCAAATGTGTCCGTATTAGCAGACAATATGGAATACATGCTTTC
CATATTGGAACCAATCTGTTCCATTGACTTAAGTGCTTCGCTGCGGAGTCTGGTTAAGCCTAGAATCGGAGGACGATGGAAACTAGTTGACCTGTACTTA
TTGGTGTAATAGCATCGATAGACGGAGTATGGTAACGATTGTATGATACCCTTATTCCGGTAAGAGCGTAGCAGACCAACGAATAGCGTACCCCCAGTAG
GCAAATGCTTTTATAGCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAAGTGGCTCGGTCCAACGAAGAA
TATCGAGAGTGCCAGCTACGAATCCACACCAAGAGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTCGTCCGCGCGGCCTCATTCGAT
ATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCACGTTAGAGGACCTCGTCACTG
AAGTGCCCGTCACGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTTCCGCGCGCACGTCCTCCGATG
CGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGTTGGGCTTCAAAGACATTCCCGACCAGTCC
ACACTCTACCGCGCGTGGGACGACCGTCTCGAAGATGTCCACGACGCAGTACGAGACGCCGCCGAGGTCGTCGTGGACATCGCCCGCTACCACGACATCC
CCGCGCCCGAACCCGAGTTCCTCCCCGATCAGCCAACCGATACGGTGACGAACTCAAAGAGCAAGGACACGCTCGCCCGTGAGAAAGCCCGTGAGGTTTG
GAAGGGCGCGAAGCCCATCGTCGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTCTGGGAGCAACAGTCCTACCTC
GGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAGGCGACTCCCACCGGTTGCAGA
CGAAGACGCTCGGCGTTGAGCGCATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTGGCGCGAGCGAAATCGAAGGACAAGATGGGGCGCAAGCA
GATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTGGAACGCGATAGTAGTGGACAGAATCAGGAGCCGTGGATTCTCGGCTACAAG
GGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCCCGGTTGTTCGTGGTCGAAAGC
GAGCGGATATCGTAGACGATCTCCTCGAAGGCGCAACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGAGTTCGCCCCGGACGGCGTCAA
AGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATCGCTAAGCTTGCCAGTGAAGAC
AAAGACTTCGATGTCATCAAGCAGGAGCGATTGGACGACGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGTGGGAACGCGAGGACGAAGACA
ACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCAAGGACGTCGGCAACACGACGCCGCTCTCGGAGGACCGCGACGGCGACTCGCC
GCTGAGCAACCTTCTCAATGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCCTGCCCTTTGAGACGAATCTCCCGTGG
GTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCCGATACAAGCGGCGTTGGGGTATCGAGAACGGCTTCAAGA
AACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCCTGCGTGCTGTACAACTGCTGGCGACTTGT
GGACATCCTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCAGTGTCCTCGAACTCGTTCCTGACGTTCGCCAAGAAAAGCTACGGCCTC
GACCCGCCCGACTAACTCTCTCATTCCTCTGGGCTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACGCCGATTTTCCACTGGATTTGTGAGCGCTATC
CGACAGGTTCCTCAGAAGCGCGTTCCGAGATTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATCATGGACCTATCTTCGCAACATC
AG
Protein section
ORF number : 4

 

ORF 1
LengthBeginEndStrandFusion ORF
1815 bp604 aa13013115+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQS
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVERIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTLPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
198 bp65 aa406209+No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSYDSD

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
396 bp131 aa805410+No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

MSELPENIQRQKRNGYLMLVGAVFTFGVTAATVQYYELSPISYLGGLVPAGILVFFGYRAVSAGRERKALGDERTQQLYGKVGINSFWILMSVIMVDMAF
SIFPEDSATSIYVWIGLACYGLYFVYYRYVE

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
123 bp40 aa924802+No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

MEQIGSNMESMYSILSANTDTFERDATQEVNSKQDSPVIL

 

Blast result :
Comments
ISH7A is 97% homologous with ISH7B.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12: 2489-2497.
File updated: June 03 2010.
References
1] Ng W.V., Ciufo S.A., Smith T.M., Bumgarner R.E., Baskin D., Faust J., Hall B., Loretz C., Seto J., Slagel J., Hood L., and DasSarma S. (1998) Genome Research 8, 1131-1141

2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346