ISH7A
- Family ISNCY
- Group
Isoform ISH7BSynonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF016485 | ND | Halobacterium sp. | Halobacterium sp. NRC-1 plasmid pNRC200 Halobacterium sp. NRC-1 plasmid pNRC100 Halobacterium salinarum R1 plasmid pHS1 |
DNA section
IS Length : 3302 bp
Ends
IR Length : 14/19
IRL : GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTC
IRR : CTGATGTTGCGAAGATAGGTCCATGATGCATAGGCTTCACTGATATATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAGGAGCTG | CGCTTCGAAT | 0 |
DNA sequence
GACGTGTTGCGAAGATAGGGAATAATGCACAGGTCTGACGACGATCACTCGCAGGACTGAATGGTCTCGCATACCCCTGCTCACAAGTGGATCGCCCGAT
TTTACCAGAACAATGGGAAAATTTGTTTCCGCTAGCAGGAAACAGACTTCGTTTGTTCAACCAAATTGCGTTAAATCAGTTGATCAGTAGATGTGCATAC
TGAACGACTCAATCACTATCGTAGGAAAAAATATCTTCTATCGAACAATCGAAATATATTGCGAGTTTGAACGCAAGTTCCAGAGATGGGTCATATCTCT
CTGCTTCAAGTGCGTTAATGGTCTGTCGAGTAACTCCAACCTCTTTCGCAAGGTCCTCTTGCGTTAGGTCGTGCTTCGCTCGATAGACCTTTAATTCGTT
CTCCATGTCTCACTCCACGTATCTGTAGTAGACGAAGTATAGACCGTAACATGCCAGTCCAATCCACACGTAGATACTGGTTGCACTGTCTTCCGGGAAG
ATACTGAACGCCATATCAACCATTATTACAGACATCAAAATCCAAAACGAGTTGATACCAACTTTGCCATACAACTGCTGGGTTCGTTCGTCGCCCAGTG
CCTTTCGTTCCCGGCCCGCAGAAACTGCTCGATAGCCAAAGAATACGAGAATTCCGGCTGGAACGAGTCCACCAAGATAGCTGATTGGTGAGAGTTCGTA
GTACTGGACTGTTGCAGCAGTCACGCCAAATGTGAACACTGCTCCGACGAGCATCAGGTATCCGTTGCGTTTCTGGCGCTGGATGTTCTCGGGGAGTTCG
CTCATAGTATCACTGGTGAATCTTGCTTTGAGTTCACTTCTTGAGTAGCGTCCCTCTCAAATGTGTCCGTATTAGCAGACAATATGGAATACATGCTTTC
CATATTGGAACCAATCTGTTCCATTGACTTAAGTGCTTCGCTGCGGAGTCTGGTTAAGCCTAGAATCGGAGGACGATGGAAACTAGTTGACCTGTACTTA
TTGGTGTAATAGCATCGATAGACGGAGTATGGTAACGATTGTATGATACCCTTATTCCGGTAAGAGCGTAGCAGACCAACGAATAGCGTACCCCCAGTAG
GCAAATGCTTTTATAGCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAAGTGGCTCGGTCCAACGAAGAA
TATCGAGAGTGCCAGCTACGAATCCACACCAAGAGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTCGTCCGCGCGGCCTCATTCGAT
ATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCACGTTAGAGGACCTCGTCACTG
AAGTGCCCGTCACGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTTCCGCGCGCACGTCCTCCGATG
CGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGTTGGGCTTCAAAGACATTCCCGACCAGTCC
ACACTCTACCGCGCGTGGGACGACCGTCTCGAAGATGTCCACGACGCAGTACGAGACGCCGCCGAGGTCGTCGTGGACATCGCCCGCTACCACGACATCC
CCGCGCCCGAACCCGAGTTCCTCCCCGATCAGCCAACCGATACGGTGACGAACTCAAAGAGCAAGGACACGCTCGCCCGTGAGAAAGCCCGTGAGGTTTG
GAAGGGCGCGAAGCCCATCGTCGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTCTGGGAGCAACAGTCCTACCTC
GGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAGGCGACTCCCACCGGTTGCAGA
CGAAGACGCTCGGCGTTGAGCGCATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTGGCGCGAGCGAAATCGAAGGACAAGATGGGGCGCAAGCA
GATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTGGAACGCGATAGTAGTGGACAGAATCAGGAGCCGTGGATTCTCGGCTACAAG
GGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCCCGGTTGTTCGTGGTCGAAAGC
GAGCGGATATCGTAGACGATCTCCTCGAAGGCGCAACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGAGTTCGCCCCGGACGGCGTCAA
AGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATCGCTAAGCTTGCCAGTGAAGAC
AAAGACTTCGATGTCATCAAGCAGGAGCGATTGGACGACGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGTGGGAACGCGAGGACGAAGACA
ACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCAAGGACGTCGGCAACACGACGCCGCTCTCGGAGGACCGCGACGGCGACTCGCC
GCTGAGCAACCTTCTCAATGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCCTGCCCTTTGAGACGAATCTCCCGTGG
GTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCCGATACAAGCGGCGTTGGGGTATCGAGAACGGCTTCAAGA
AACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCCTGCGTGCTGTACAACTGCTGGCGACTTGT
GGACATCCTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCAGTGTCCTCGAACTCGTTCCTGACGTTCGCCAAGAAAAGCTACGGCCTC
GACCCGCCCGACTAACTCTCTCATTCCTCTGGGCTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACGCCGATTTTCCACTGGATTTGTGAGCGCTATC
CGACAGGTTCCTCAGAAGCGCGTTCCGAGATTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATCATGGACCTATCTTCGCAACATC
AG
TTTACCAGAACAATGGGAAAATTTGTTTCCGCTAGCAGGAAACAGACTTCGTTTGTTCAACCAAATTGCGTTAAATCAGTTGATCAGTAGATGTGCATAC
TGAACGACTCAATCACTATCGTAGGAAAAAATATCTTCTATCGAACAATCGAAATATATTGCGAGTTTGAACGCAAGTTCCAGAGATGGGTCATATCTCT
CTGCTTCAAGTGCGTTAATGGTCTGTCGAGTAACTCCAACCTCTTTCGCAAGGTCCTCTTGCGTTAGGTCGTGCTTCGCTCGATAGACCTTTAATTCGTT
CTCCATGTCTCACTCCACGTATCTGTAGTAGACGAAGTATAGACCGTAACATGCCAGTCCAATCCACACGTAGATACTGGTTGCACTGTCTTCCGGGAAG
ATACTGAACGCCATATCAACCATTATTACAGACATCAAAATCCAAAACGAGTTGATACCAACTTTGCCATACAACTGCTGGGTTCGTTCGTCGCCCAGTG
CCTTTCGTTCCCGGCCCGCAGAAACTGCTCGATAGCCAAAGAATACGAGAATTCCGGCTGGAACGAGTCCACCAAGATAGCTGATTGGTGAGAGTTCGTA
GTACTGGACTGTTGCAGCAGTCACGCCAAATGTGAACACTGCTCCGACGAGCATCAGGTATCCGTTGCGTTTCTGGCGCTGGATGTTCTCGGGGAGTTCG
CTCATAGTATCACTGGTGAATCTTGCTTTGAGTTCACTTCTTGAGTAGCGTCCCTCTCAAATGTGTCCGTATTAGCAGACAATATGGAATACATGCTTTC
CATATTGGAACCAATCTGTTCCATTGACTTAAGTGCTTCGCTGCGGAGTCTGGTTAAGCCTAGAATCGGAGGACGATGGAAACTAGTTGACCTGTACTTA
TTGGTGTAATAGCATCGATAGACGGAGTATGGTAACGATTGTATGATACCCTTATTCCGGTAAGAGCGTAGCAGACCAACGAATAGCGTACCCCCAGTAG
GCAAATGCTTTTATAGCAAAACGCCAGAATTGACAGTAGTGTCACAGACGGCGCGTCCGCCCGCAAATTCCCGGTGGAAGTGGCTCGGTCCAACGAAGAA
TATCGAGAGTGCCAGCTACGAATCCACACCAAGAGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTCGTCCGCGCGGCCTCATTCGAT
ATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCACGTTAGAGGACCTCGTCACTG
AAGTGCCCGTCACGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGAAACCCTGGGGTGCCGTCTTCCGCGCGCACGTCCTCCGATG
CGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTACCTGAAACAGCAGCCGTTTCTCTGCACGCAGTTGGGCTTCAAAGACATTCCCGACCAGTCC
ACACTCTACCGCGCGTGGGACGACCGTCTCGAAGATGTCCACGACGCAGTACGAGACGCCGCCGAGGTCGTCGTGGACATCGCCCGCTACCACGACATCC
CCGCGCCCGAACCCGAGTTCCTCCCCGATCAGCCAACCGATACGGTGACGAACTCAAAGAGCAAGGACACGCTCGCCCGTGAGAAAGCCCGTGAGGTTTG
GAAGGGCGCGAAGCCCATCGTCGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTCGATTCCCGAGGGCGCGTTCTGGGAGCAACAGTCCTACCTC
GGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGTCCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAGGCGACTCCCACCGGTTGCAGA
CGAAGACGCTCGGCGTTGAGCGCATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTGGCGCGAGCGAAATCGAAGGACAAGATGGGGCGCAAGCA
GATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTGGAACGCGATAGTAGTGGACAGAATCAGGAGCCGTGGATTCTCGGCTACAAG
GGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCGCTGATCCTTGATGCCGTCCCGGTTGTTCGTGGTCGAAAGC
GAGCGGATATCGTAGACGATCTCCTCGAAGGCGCAACCGACATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGAGTTCGCCCCGGACGGCGTCAA
AGACGTCTGCGAGACGCACGACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATCGCTAAGCTTGCCAGTGAAGAC
AAAGACTTCGATGTCATCAAGCAGGAGCGATTGGACGACGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGTGGGAACGCGAGGACGAAGACA
ACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCAAGGACGTCGGCAACACGACGCCGCTCTCGGAGGACCGCGACGGCGACTCGCC
GCTGAGCAACCTTCTCAATGAGGTCGCCGAAGAGGAGGAGATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCCTGCCCTTTGAGACGAATCTCCCGTGG
GTGGATGTCGATCCCGCCGACCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCCGATACAAGCGGCGTTGGGGTATCGAGAACGGCTTCAAGA
AACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCCTGCGTGCTGTACAACTGCTGGCGACTTGT
GGACATCCTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCAGTGTCCTCGAACTCGTTCCTGACGTTCGCCAAGAAAAGCTACGGCCTC
GACCCGCCCGACTAACTCTCTCATTCCTCTGGGCTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACGCCGATTTTCCACTGGATTTGTGAGCGCTATC
CGACAGGTTCCTCAGAAGCGCGTTCCGAGATTTGCTCGGCTATTTCTTTCAAACATATATCAGTGAAGCCTATGCATCATGGACCTATCTTCGCAACATC
AG
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1815 bp | 604 aa | 1301 | 3115 | + | No |
Chemistry : Unknow
ORF sequence :
MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQS
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVERIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTLPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD
TLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYL
GMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVERIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK
GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED
KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEIDEPARVEAPTLPFETNLPW
VDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL
DPPD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
198 bp | 65 aa | 406 | 209 | + | No |
Annotation : Description :
ORF sequence :
MENELKVYRAKHDLTQEDLAKEVGVTRQTINALEAERYDPSLELAFKLAIYFDCSIEDIFSYDSD
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
396 bp | 131 aa | 805 | 410 | + | No |
Annotation : Description :
ORF sequence :
MSELPENIQRQKRNGYLMLVGAVFTFGVTAATVQYYELSPISYLGGLVPAGILVFFGYRAVSAGRERKALGDERTQQLYGKVGINSFWILMSVIMVDMAF
SIFPEDSATSIYVWIGLACYGLYFVYYRYVE
SIFPEDSATSIYVWIGLACYGLYFVYYRYVE
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
123 bp | 40 aa | 924 | 802 | + | No |
Annotation : Description :
ORF sequence :
MEQIGSNMESMYSILSANTDTFERDATQEVNSKQDSPVIL
Blast result :
Comments
ISH7A is 97% homologous with ISH7B.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12: 2489-2497.
File updated: June 03 2010.
The boundary setting is based on the ISH24 element described in Nucleic Acids Res. (1984) 12: 2489-2497.
File updated: June 03 2010.
References
1] Ng W.V., Ciufo S.A., Smith T.M., Bumgarner R.E., Baskin D., Faust J., Hall B., Loretz C., Seto J., Slagel J., Hood L., and DasSarma S. (1998) Genome Research 8, 1131-1141
2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346
2] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346