ISSphsp12
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Sphingobium sp. | Sphingobium sp. Sphingobium sp. SA2 Sphingobium sp. KCTC 72723 |
DNA section
IS Length : 1456 bp
Ends
IR Length : 21/22
IRL : GTAATTGCTCACGGGGTTGGCAGAAAAGTATTGCGCGGAGGTCGATTGGC
IRR : GTAATTGCTCACGGGGTCGGCAATTGGTGGGCTGATCAGGCGACCATGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGACCAGAAG | cAACGTCG | CAGTTCTACC | 8 |
CCCGCAGCGG | cAATTATG | CCAGAGACCA | 8 |
GGCGGAAACAGCA | GTTTTGGC | GACAGCGACATGG | 8 |
DNA sequence
GTAATTGCTCACGGGGTTGGCAGAAAAGTATTGCGCGGAGGTCGATTGGCTGATTCACCCTACGGATGTCACCGCCGCCGCTTCATGTGCTGACCGAAGC
CGAGAAGAACGAGTTGCTGCTCGCGCAGCACGAGATGATCGAGCGACTGGTAGCGCGGATTTCTGAGTTGGAATCCCTGGTCGGCACGCCGCGCAAGACA
TCCAGGAATTCGCATATTCCGCCATCGAAGGACGACTTTGGCAAGCGCGGTGGCAAAGGCGGTAAGCCCAAGGCTGGCAAGCGCCCGCCGCGCGAAGGCA
AGCACCGCCCATTGACCGAGACGCCGGACAAAACCGAACGCATCATGGCGGCAAGCTGCTGCCATTGCGGGACCGATATATCCTCGCAGGCCCAGCATTG
CCGCCACCGCTACGATCATATCGACCTGCCGCCGATCCGTCCGATTGTGACCCGCATCGAATTGTTTGGTGCGCGCTGCGGGGGATGTGGCCGTCGCTAC
CGTGCCGCAGCACCGGCGGGCATGGAGCCGGGCACGCCGTTTGGCCCCGGCATCCGCTCGCTGCTGGCCTATCTGCATCACAGCCACCATGTCAGCTTCG
AGCGACTTTCGCGCATTGCTGCGGAGCTGTTTGGCCTCACGATCTCCCAAGGGGCGATCGCCAACGCGTTCAGGCGTATGGAGGCCGGAATGACAGCAGC
CACGAAGGCGATCACCGACAAGTTGCTCACGGCAAAGATTATCGCGTCCGATGAGACGTCCACGCGCACCAACGGCATTGCCCATTGGCAATGGGTCTTC
CTCTCGAAAGACGCGGTTCTGCACAAGATCGCCCCGCGCCGGGCGCGCAGTGTTGCTGAGGAGGTGTTGGGCGGCCACCAACCTGATGTGTGGGTCTCCG
ATCGCTACGCTGGACAGCAGGAACTGGGCAAGGAGCATCAGGTCTGCCTCGCGCATGTCCTGCGCGATGTTCAGTATGCCATCGACTGCGGGGATACCGC
CTTCGCCCCCAAAGTCCGCGACCACCTGCGCTGGGCGATCCGCATCGGCAAGCGACGAAGCAGCCTGAAGGACACAACGCTGGCCGCCTACGCTGCGAAG
GCCGACAATCTGCTGACCCGCCTGGTACAGATGCCTGTCGCGCACCCTGCGGGACGTGTTCTGCTCAAACAAATCAAGGCTTGGCGAAGCAAGTTCTTCA
TCTTCCTCACCAACCGCAACGTCCCTGCGACCAACAATATATCAGAGCGCGAGATCCGCCCCTCAGTCGTGTTCCGCAAGGTCACCAACGGCTTCCGGTC
CGACTGGGGCGCCCAGATCCACGCTGGATATCGATCCGTCACCGGAACCGCTCGTCTCAGCGGCAAATCGGCCCTCGTAGCCATCCGCGAACTCGTCGAC
GGCAGATTCATGGTCGCCTGATCAGCCCACCAATTGCCGACCCCGTGAGCAATTAC
CGAGAAGAACGAGTTGCTGCTCGCGCAGCACGAGATGATCGAGCGACTGGTAGCGCGGATTTCTGAGTTGGAATCCCTGGTCGGCACGCCGCGCAAGACA
TCCAGGAATTCGCATATTCCGCCATCGAAGGACGACTTTGGCAAGCGCGGTGGCAAAGGCGGTAAGCCCAAGGCTGGCAAGCGCCCGCCGCGCGAAGGCA
AGCACCGCCCATTGACCGAGACGCCGGACAAAACCGAACGCATCATGGCGGCAAGCTGCTGCCATTGCGGGACCGATATATCCTCGCAGGCCCAGCATTG
CCGCCACCGCTACGATCATATCGACCTGCCGCCGATCCGTCCGATTGTGACCCGCATCGAATTGTTTGGTGCGCGCTGCGGGGGATGTGGCCGTCGCTAC
CGTGCCGCAGCACCGGCGGGCATGGAGCCGGGCACGCCGTTTGGCCCCGGCATCCGCTCGCTGCTGGCCTATCTGCATCACAGCCACCATGTCAGCTTCG
AGCGACTTTCGCGCATTGCTGCGGAGCTGTTTGGCCTCACGATCTCCCAAGGGGCGATCGCCAACGCGTTCAGGCGTATGGAGGCCGGAATGACAGCAGC
CACGAAGGCGATCACCGACAAGTTGCTCACGGCAAAGATTATCGCGTCCGATGAGACGTCCACGCGCACCAACGGCATTGCCCATTGGCAATGGGTCTTC
CTCTCGAAAGACGCGGTTCTGCACAAGATCGCCCCGCGCCGGGCGCGCAGTGTTGCTGAGGAGGTGTTGGGCGGCCACCAACCTGATGTGTGGGTCTCCG
ATCGCTACGCTGGACAGCAGGAACTGGGCAAGGAGCATCAGGTCTGCCTCGCGCATGTCCTGCGCGATGTTCAGTATGCCATCGACTGCGGGGATACCGC
CTTCGCCCCCAAAGTCCGCGACCACCTGCGCTGGGCGATCCGCATCGGCAAGCGACGAAGCAGCCTGAAGGACACAACGCTGGCCGCCTACGCTGCGAAG
GCCGACAATCTGCTGACCCGCCTGGTACAGATGCCTGTCGCGCACCCTGCGGGACGTGTTCTGCTCAAACAAATCAAGGCTTGGCGAAGCAAGTTCTTCA
TCTTCCTCACCAACCGCAACGTCCCTGCGACCAACAATATATCAGAGCGCGAGATCCGCCCCTCAGTCGTGTTCCGCAAGGTCACCAACGGCTTCCGGTC
CGACTGGGGCGCCCAGATCCACGCTGGATATCGATCCGTCACCGGAACCGCTCGTCTCAGCGGCAAATCGGCCCTCGTAGCCATCCGCGAACTCGTCGAC
GGCAGATTCATGGTCGCCTGATCAGCCCACCAATTGCCGACCCCGTGAGCAATTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1356 bp | 451 aa | 66 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MSPPPLHVLTEAEKNELLLAQHEMIERLVARISELESLVGTPRKTSRNSHIPPSKDDFGKRGGKGGKPKAGKRPPREGKHRPLTETPDKTERIMAASCCH
CGTDISSQAQHCRHRYDHIDLPPIRPIVTRIELFGARCGGCGRRYRAAAPAGMEPGTPFGPGIRSLLAYLHHSHHVSFERLSRIAAELFGLTISQGAIAN
AFRRMEAGMTAATKAITDKLLTAKIIASDETSTRTNGIAHWQWVFLSKDAVLHKIAPRRARSVAEEVLGGHQPDVWVSDRYAGQQELGKEHQVCLAHVLR
DVQYAIDCGDTAFAPKVRDHLRWAIRIGKRRSSLKDTTLAAYAAKADNLLTRLVQMPVAHPAGRVLLKQIKAWRSKFFIFLTNRNVPATNNISEREIRPS
VVFRKVTNGFRSDWGAQIHAGYRSVTGTARLSGKSALVAIRELVDGRFMVA
CGTDISSQAQHCRHRYDHIDLPPIRPIVTRIELFGARCGGCGRRYRAAAPAGMEPGTPFGPGIRSLLAYLHHSHHVSFERLSRIAAELFGLTISQGAIAN
AFRRMEAGMTAATKAITDKLLTAKIIASDETSTRTNGIAHWQWVFLSKDAVLHKIAPRRARSVAEEVLGGHQPDVWVSDRYAGQQELGKEHQVCLAHVLR
DVQYAIDCGDTAFAPKVRDHLRWAIRIGKRRSSLKDTTLAAYAAKADNLLTRLVQMPVAHPAGRVLLKQIKAWRSKFFIFLTNRNVPATNNISEREIRPS
VVFRKVTNGFRSDWGAQIHAGYRSVTGTARLSGKSALVAIRELVDGRFMVA
Blast result :
Comments
ISSphsp12 is 82% aa similar to ISRhru2.
References
1] Maurizio Labbate (2021) Direct submission.