ISSphsp12

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Sphingobium sp.
Sphingobium sp.
Sphingobium sp. SA2
Sphingobium sp. KCTC 72723
DNA section
IS Length : 1456 bp

Ends


IR Length : 21/22

IRL : GTAATTGCTCACGGGGTTGGCAGAAAAGTATTGCGCGGAGGTCGATTGGC
IRR : GTAATTGCTCACGGGGTCGGCAATTGGTGGGCTGATCAGGCGACCATGAA

Insertion site


Left flankDirect repeatRight flankDR Length
CGACCAGAAGcAACGTCGCAGTTCTACC8
CCCGCAGCGGcAATTATGCCAGAGACCA8
GGCGGAAACAGCAGTTTTGGCGACAGCGACATGG8

DNA sequence

GTAATTGCTCACGGGGTTGGCAGAAAAGTATTGCGCGGAGGTCGATTGGCTGATTCACCCTACGGATGTCACCGCCGCCGCTTCATGTGCTGACCGAAGC
CGAGAAGAACGAGTTGCTGCTCGCGCAGCACGAGATGATCGAGCGACTGGTAGCGCGGATTTCTGAGTTGGAATCCCTGGTCGGCACGCCGCGCAAGACA
TCCAGGAATTCGCATATTCCGCCATCGAAGGACGACTTTGGCAAGCGCGGTGGCAAAGGCGGTAAGCCCAAGGCTGGCAAGCGCCCGCCGCGCGAAGGCA
AGCACCGCCCATTGACCGAGACGCCGGACAAAACCGAACGCATCATGGCGGCAAGCTGCTGCCATTGCGGGACCGATATATCCTCGCAGGCCCAGCATTG
CCGCCACCGCTACGATCATATCGACCTGCCGCCGATCCGTCCGATTGTGACCCGCATCGAATTGTTTGGTGCGCGCTGCGGGGGATGTGGCCGTCGCTAC
CGTGCCGCAGCACCGGCGGGCATGGAGCCGGGCACGCCGTTTGGCCCCGGCATCCGCTCGCTGCTGGCCTATCTGCATCACAGCCACCATGTCAGCTTCG
AGCGACTTTCGCGCATTGCTGCGGAGCTGTTTGGCCTCACGATCTCCCAAGGGGCGATCGCCAACGCGTTCAGGCGTATGGAGGCCGGAATGACAGCAGC
CACGAAGGCGATCACCGACAAGTTGCTCACGGCAAAGATTATCGCGTCCGATGAGACGTCCACGCGCACCAACGGCATTGCCCATTGGCAATGGGTCTTC
CTCTCGAAAGACGCGGTTCTGCACAAGATCGCCCCGCGCCGGGCGCGCAGTGTTGCTGAGGAGGTGTTGGGCGGCCACCAACCTGATGTGTGGGTCTCCG
ATCGCTACGCTGGACAGCAGGAACTGGGCAAGGAGCATCAGGTCTGCCTCGCGCATGTCCTGCGCGATGTTCAGTATGCCATCGACTGCGGGGATACCGC
CTTCGCCCCCAAAGTCCGCGACCACCTGCGCTGGGCGATCCGCATCGGCAAGCGACGAAGCAGCCTGAAGGACACAACGCTGGCCGCCTACGCTGCGAAG
GCCGACAATCTGCTGACCCGCCTGGTACAGATGCCTGTCGCGCACCCTGCGGGACGTGTTCTGCTCAAACAAATCAAGGCTTGGCGAAGCAAGTTCTTCA
TCTTCCTCACCAACCGCAACGTCCCTGCGACCAACAATATATCAGAGCGCGAGATCCGCCCCTCAGTCGTGTTCCGCAAGGTCACCAACGGCTTCCGGTC
CGACTGGGGCGCCCAGATCCACGCTGGATATCGATCCGTCACCGGAACCGCTCGTCTCAGCGGCAAATCGGCCCTCGTAGCCATCCGCGAACTCGTCGAC
GGCAGATTCATGGTCGCCTGATCAGCCCACCAATTGCCGACCCCGTGAGCAATTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp451 aa661421+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPPPLHVLTEAEKNELLLAQHEMIERLVARISELESLVGTPRKTSRNSHIPPSKDDFGKRGGKGGKPKAGKRPPREGKHRPLTETPDKTERIMAASCCH
CGTDISSQAQHCRHRYDHIDLPPIRPIVTRIELFGARCGGCGRRYRAAAPAGMEPGTPFGPGIRSLLAYLHHSHHVSFERLSRIAAELFGLTISQGAIAN
AFRRMEAGMTAATKAITDKLLTAKIIASDETSTRTNGIAHWQWVFLSKDAVLHKIAPRRARSVAEEVLGGHQPDVWVSDRYAGQQELGKEHQVCLAHVLR
DVQYAIDCGDTAFAPKVRDHLRWAIRIGKRRSSLKDTTLAAYAAKADNLLTRLVQMPVAHPAGRVLLKQIKAWRSKFFIFLTNRNVPATNNISEREIRPS
VVFRKVTNGFRSDWGAQIHAGYRSVTGTARLSGKSALVAIRELVDGRFMVA

 

Blast result :
Comments
ISSphsp12 is 82% aa similar to ISRhru2.
References
1] Maurizio Labbate (2021) Direct submission.