ISSphsp9

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Sphingobium sp.
Sphingobium sp.
Sphingobium sp. SA2
Sphingobium sp. KCTC 72723
DNA section
IS Length : 2789 bp

Ends


IR Length : 34/49

IRL : TGCGCGGCGACAACTACGATGGCCGGTTGAGCGGCGACTATGATGGCCGG
IRR : TGTAGCGCGACGATTACGGAGTCCGGTCGGCGTCAATTTTGATGGCCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCGCGATGCGATGCGTCCA0

DNA sequence

TGCGCGGCGACAACTACGATGGCCGGTTGAGCGGCGACTATGATGGCCGGTAGGATCGGTTGTCTGGTCTGATCGTAGGGAGGGGCGCAGCCCCGACCGG
AGAGCGGACCAGACAACCGGTGGCGATCTTTTTCCCCTTCTTTCGGGGGGCAGATCGGGGCTGTGGCGGGCGGTGGTATCGGAACACTCATCGAACAACG
AGCGATGGGTTTGCGATGCCGGGCCACCACATTTCCGATCAGCAGGTATTTCTCTTCATGACCCATCGTCGCCAACACACCCAGGCCGTCGCGGCTGCCA
AGGCCGGTATCAGCGAACGCAGCGCACGCCGGATCGAGAACGATCCGCAGCTTCCGTCCCAGAAGAAGAAGGAGCGCCACTGGCGCACCCGCGCCGATCC
GCTCGAGCCATTCTGGCCACGTATAGAGGAGTTGCTCCAGATCGACGGTATCATTGCCGTCACGGTCTTCGAGACGCTCCAGGACGAGTTCGGCGAGGAT
GCTGTTCCCGATGCGATACGACGAACACTGGAACGCCGGATCGCCCGCTGGCGGGCACTGCACGGCGGCGAGAAGGAGATCTTCTTCCCGCAGCATCATG
AGCCCGGTCGGCAGGGCCTGTCGGATTTCACGGTATGCGACAGTCTCAAGGTCACCGTTGCCGGCGAGACCCTGGCCTATCGCCTCTACCACTTCCGCTT
GGCGGCGAGTGGCTGGGAGCATGCGGCTGTCGTGCTGGGCGGGGAGAGCTTTGCCGCCCTTTCGGAGCACCTGCAGGATGCGTTGTGGAAGCTGGGCGGT
GCGCCGGCCGAACACCGCAGCGATTCCCTGTCAGCCGCCTACAAAAACCTCGACGCCGATGCGCAGCGGGATTTCACCCGAAGCTATGACGAGCTGTGTC
GTCATTACGGCATGCTTGCTACCCGCAACAACCGCGGCGAGGCGCACGAGAACGGATCGATCGAAGGTCCCCATGCCCATCTCAAGCGACGGCTCGATCA
GGCCTTACGCCGGCGGGGCAGCCGCGATTTCGTCAGCATCGAGGCCTGGCGCGAGTTCGTTGAGGCGCAGGTCGCCAGACAGAACCGGCGGCATGCTGCG
CGCATCGATGCAGAACGCAGGGTACTCAAGGCGCTGCCCGCAAGGCGAACCACCGATTTCGCCATGGCCACCGTCGATGTCACCCGCAACGGCACCGTCG
CCATCGATCGGGTTACCTATTCGGTGCCTTCCCGCCTCGTCGGACGGCGCCTCAACGCGCATCTCTTTGACGATCGCATCGAGCTCTTCCTCGGTCCGGA
CAGGGTAATGTCCACGCCGCGTGTGCGGATCAGTCATCCCCACCGGGGGCATAGCATCGATTTCCGGCACATGATCGGTAACCTGCGCCGCAAGCGCGGT
GCACTGCGCAACCTCGTCTACCGCGAAGCCCTCTTCCCCGATCACGCCTACCGGCGGGCCTGGCAAGCCTTCGATGCCCAACTCGATGGACGGCAGGCCT
GCCGCGATGCCGTCGCGCTGCTCGATATCGCCGCCAGGGGCGACTGTGTCGACGTGCTGGCCCGGCGGATCGATGAGGCTCTCGACAGCGGGCGCTTGCC
CGATGTCGATGCGCTCAGGGACGAGTTCCTGCCAACCGCAAGATCGCAGCGCGATGTCGCTATCCCGCCACCCGATCTGCACAGCTACAACAGCCTGATC
GCCAGCGGGGAGGTGCACTGATGACCCGCACCAAGGATCAGGCCGCCGCCGTACTGCCTACCCTGCTGAAGGCCTTGCGCCTGCCGAGCATCAACCGCAA
CTGGAAGCGCCTCACCGACACCGCCGATCGCGATGGCTGGCCGGCCGCCAACCTGCTGGCCTCGCTTCTCGAGATCGAGATGGCTGATCGCTCCTCCCGG
CGCATCCAGCGCCATCGCGACCAGTCCGGCTTGCCCGCAGGCAAGACCTTCGCCACCTTCGATTTCGACGCCGCCCCCGGCATCCGCAAACCGCACCTCT
TGTCCCTCGCCGCCGGTGACGACTGGATCGAGAACGGCGGCAACCTGCTGCTGTTCGGCCAGAGCGGGACCGGCAAGACGCACGCAGTTGCCGCCATTGG
CCATGCCCTCATCGACACGGGGCGGCGCGTCCTGTTCTGCTCCACCACCGACATGGTCCAGAAGCTCCAGTCCGCGCGCCGCGACCTCAGCCTGCCCGCC
ATGCTCGACAAGCTCGACAAGTTCGATCTCATCGTGCTCGACGATCTGTCCTACGTCCGCAAGGACCAGGTCGAGACCAGCGCCTTGTTCGAGCTCATCG
CCCACCGCTACGAACGCCACTCGCTCGCCATTACCGCCAACTAGCCATTTTCGGCATGGGACAACGTCTTCCCTGATCCCGCCATGACTGTCGCCGCGAT
CGACCGCCTCGTGCACCACTCGACCATCATCGAGATGAACGGCGAAAGCTACCGCAAGCGTTCCGCCGTCGCCCGCATCAACGCCGGCGATTACGACCCG
CCCAATGGCGCCCCGGACCGGCCATCATAATTGTCGCTGGCTTCGCGCTCGGGAGCACCCTTGCTGAGGCAACGGGTAATTGTCGCCAGCGGCAATTACA
TGCCAACCATCCCATGCGCTTCAAACCCTCGCTTCCGGCCAGCGCCAGCGACAATTACCCAGCGTCGTAATTGTCGCTCGACGGTTGCTCCTCGCAACAG
CAAATGGTAGCCAGAATTCACCAACCGGCGCGGCCACCTATCGGCCATCAAAATTGACGCCGACCGGACTCCGTAATCGTCGCGCTACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1506 bp501 aa2161721+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTHRRQHTQAVAAAKAGISERSARRIENDPQLPSQKKKERHWRTRADPLEPFWPRIEELLQIDGIIAVTVFETLQDEFGEDAVPDAIRRTLERRIARWRA
LHGGEKEIFFPQHHEPGRQGLSDFTVCDSLKVTVAGETLAYRLYHFRLAASGWEHAAVVLGGESFAALSEHLQDALWKLGGAPAEHRSDSLSAAYKNLDA
DAQRDFTRSYDELCRHYRMLATRNNRGEAHENGSIEGPHAHLKRRLDQALRRRGSRDFVSIEAWREFVEAQVARQNRRHAARIDAERRVLKALPARRTTD
FAMVTVDVTRNGTVAIDRVTYSVPSRLVGRRLNAHLFDDRIELFLGPDRVMSTPRVRISHPHRGHSIDFRHMIGNLRRKPGALRNLVYREALFPDHAYRR
AWQAFDAQLDGRQACRDAVALLDIAARGDCVDVLARRIDEALDSGRLPDVDALRDEFLPTARSQRDVAIPPPDLHSYNSLIASGEVH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
624 bp207 aa17212344+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MTRTKDQAAAVLPTLLKALRLPSINRNWKRLTDTADRDGWPAANLLASLLEIEMADRSSRRIQRHRDQSGLPAGKTFATFDFDAAPGIRKPHLLSLAAGD
DWIENGGNLLLFGQSGTGKTHAVAAIGHALIDTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLDKFDLIVLDDLSYVRKDQVETSALFELIAHRYERH
SLAITANQPFSAWDNVFPDPAMTVAAIDRLVHHSTIIEMNGESYRKRSAVARINAGDYDPPNGAPDRPS

 

Blast result :
Comments
ISSphsp9 is 74% aa similar to ISAli13.
References
1] Maurizio Labbate (2021) Direct submission.