ISSphsp7

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Sphingobium sp.
Sphingobium sp.
Sphingobium sp. SA2
Sphingobium yanoikuyae SK-NIH.Env6_1116
DNA section
IS Length : 2519 bp

Ends


IR Length : 31/39

IRL : TGTGGATCGGCGTGCAAAAAGGACCCCGTTAGCGGGGTGATCGGCGTCTA
IRR : TGTCAATCGGCGTGCAAACGGGACCCCTTATCGGCGCGCAAAAGGGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
CGAAGTAGAAAAGTAGAAGG0
CTATCGTCAGACCTTGATGG0
GTCGCAAAACTCTCTGCCGA0
GACAACCATTGGCACATGACCGG3

DNA sequence

TGTGGATCGGCGTGCAAAAAGGACCCCGTTAGCGGGGTGATCGGCGTCTAAAAGGGACCCCTCATTTCGATGGTTTAAGCAGCCGGCTGGATTTTCAGGC
GGCGAGATCGGGATGTTGGTTTTGGAGACAGTTTTACGGATCCGGCGCGAGTATGCCGGAGGCAAGGCGATCAAGGCGATCGCACGGGATCTGCATGTGT
CGCGGAAGGTCATCCGCAAAGCGGTCCGAGCGCCGGAGGGCGCCTTTGATTATCAGCGCAAGGTTCAGCCGCTGCCCAGGATCGGTCCGTTTCAGGAGCG
CCTGAACACGCTGCTGGAAGAGAACGAGCTGCGCGGCAGGCGTGACCGGCTGCGGATGACGCGGATCCATGACCTGCTGGTGCGCGAAGGCTTTGAGGGT
TCTTACGATGCGGTGCGGCGCTATACGACGCGCTGGAAGATCGAGCGGCGCAAAGATGCCGGCGATGGTGTCACGGCCTTCATCCCGCTGATGTTCAGGC
CAGGCGAGGCCTACCAGTTCGACTGGAGCCATGAAGATGTTGAGATCGCCGGGGCACCGATGCGGGTGAAGGTCGCGCATATGCGACTGTGTGCCTCACG
CGCGGTCTATGTCCGGGCTTATCCTCGTGAGAGCCAGGAGATGCTGTTCGACGCGCATGCGCGCGGCTTTGCTTTCTTCGGCGGCGTGCCAGGGCGCGGC
ATCTACGATAATATGAAGACGGCTGTGACGAGCGTGTTCACCGGCAAGGAACGCGTCTTCAACCGGCGGTTCCTGATCATGACCGACCATTATATGGTCG
AGCCCACGGCCTGCTCGCCTGCGGCGGGATGGGAGAAGGGTCAGGTCGAGAACCAGGTGCAGACGATCCGGGGTCGCTTCTTCCAGCCCCGGTTGCGGTT
CGCCAGTCTCGAAGAGCTCAATGGCTGGCTGGAGGCCGAGTGTCGGCGCTGGGCGGAACGGCAGCCCCATCCCGAACAGGGAGAGCTGACCGTGGCGCAG
ATGCTGGAGATCGAACGATCTGCGCTGCAGCCGATGCTGGGACCGTTCGACGGCTTCAATGAGAGCGAGCATGCTGTGACCGGCACCTGCCTGATCAGCT
TCGACCGCAATCGCTACTCGGTGCTATCGACGGTGGCACGACGCACGGTGCAGGTCCGCGCCTATGCCGATCGCATCGTCGTTCGCTGCGGCGAAGAGGT
TGTCGCTGAACATCCTCGCTACTTTGGGCGCAACCGCACGATCTATGACCCCTGGCATTATCTGCCAGTGCTGGCCCGCAAGCCTGGCGCGCTGCGGAAC
GGTGCCCCCTTCCAGGACTGGGATCTGCCACCGGCGCTTGCCCGCCTGCGCCGCAAGCTGGGTAATGGCGACGATGCCGATCGCCGGTTCGTCCGTGTAC
TGTCGGCCGTACTGACCGATGGCCTGGAGCCTGTCGAAGCCGCTGTGCATGAGGCACTGGCGACGGGCACGGCAAGCGACGACCTGATCCTCAACATCCT
GGCACGACGCCGGGAACCGCCGCGTCCGCTGACGATCATCACCTCCGAGGATAGCGCTCTGCGCCATCCCCCGATCGCCGACTGTGCCCGTTACGACCAG
CTGAGGACCTTCGATGCAGCGGCATGATATGATCGAGGCCATGCGCGGGCTTGGACTCAAGGGCATGGCGGGCGCGTTCGACGATGCCGTCATCACCGGC
CTTCAGCGCCAGCGCACCACCATGGAGATACTGACCGATCTCCTGCGAGCGGAGGCGACGCATCGTCATGCCGCGTCGATCCGATACCGGATGGCCGCTG
CCAGGCTGCCAGTCGTAAAGGACATCGATGCCTTCCGGTTCGAGGGTACCCCGATCAACGAGGGGCTTGTGCGTTCATTGCACAGCGGCGCGTTCCTGCC
CGCACGGCGCAATATCGTCCTGGTCGGCGGCACAGGCACAGGAAAGACCCATCTGGCCATCGCCATCACCGCCAATGTAGTGCGCTCCGGCGCCCGAGGC
CGCTACTTCAACACGGTCGATCTGGTGACCCGCCTCGAAGAGGAGGCCAGGATCGGCAAGAGTGGCGCTCTCGCCGCCCAGCTATCCCGCCTCGATCTGA
TCGTGCTCGATGAACTGGGCTATCTGCCGTTCGCCCGATCAGGCGGCCAGCTGCTGTTCCACCTGATCAGCAAACTCTATGAGCAGACCAGCGTCATCAT
CACCACCAACCTCGCCTTTGGCGAGTGGCCCACCGTGTTCGGCGATCCCAAGATGACCACCGCGCTCCTCGACCGCGTCACCCATCATTGCGACATCGTC
GAGACCGGCAATGACAGCTGGCGCTTCAAAAACCGCAGCTGATCCCCCCCAGCACCGATCAATTAGAAGATGTTTTGCGCTGCGCGCGCCTCCGGTCGGG
CTACGCCCTCCCTACGCCGCGCGCAGCGCAAGGAAGCCCGTCACATCAACGCTCCGCCATCCTGACAGGGGGTCCCTTTTGCGCGCCGATAAGGGGTCCC
GTTTGCACGCCGATTGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1515 bp504 aa1131627+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVLETVLRIRREYAGGKAIKAIARDLHVSRKVIRKAVRAPEGAFDYQRKVQPLPRIGPFQERLNTLLEENELRGRRDRLRMTRIHDLLVREGFEGSYDA
VRRYTTRWKIERRKDAGDGVTAFIPLMFRPGEAYQFDWSHEDVEIAGAPMRVKVAHMRLCASRAVYVRAYPRESQEMLFDAHARGFAFFGGVPGRGIYDN
MKTAVTSVFTGKERVFNRRFLIMTDHYMVEPTACSPAAGWEKGQVENQVQTIRGRFFQPRLRFASLEELNGWLEAECRRWAERQPHPEQGELTVAQMLEI
ERSALQPMLGPFDGFNESEHAVTGTCLISFDRNRYSVLSTVARRTVQVRAYADRIVVRCGEEVVAEHPRYFGRNRTIYDPWHYLPVLARKPGALRNGAPF
QDWDLPPALARLRRKLGNGDDADRRFVRVLSAVLTDGLEPVEAAVREALATGTASDDLILNILARRREPPRPLTIITSEDSALRHPPIADCARYDQLRTF
DAAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
729 bp242 aa16142342+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MQRHDMIEAMRGLGLKGMAGAFDDAVTTGLQRQRTTMEILTDLLRAEATHRHAASIRYRMAAARLPVVKDIDAFRFEGTPINEGLVRSLHSGAFLPARRN
IVLVGGTGTGKTHLAIAITANVVRSGARGRYFNTVDLVTRLEEEARIGKSGALAAQLSRLDLIVLDELGYLPFARSGGQLLFHLISKLYEQTSVIITTNL
AFGEWPTVFCDPKMTTALLDRVTHHCDIVETGNDSWRFKNRS

 

Blast result :
Comments
ISSphsp7 is 83% aa (transposase) similar to ISSsp4.
References
1] Maurizio Labbate (2021) Direct submission.