ISH6

  • Family ISH6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISH6B
Accession numberTranspositionOriginHost
NC_002607 Y Halobacterium salinarum
Halobacterium salinarum R1
Haloarcula californiae ATCC 33799
Halorhabdus tiamatea SARL4B
Halobacterium salinarum NRC-1 plasmid pNRC200
Halobacterium salinarum R1 plasmid pHS2
DNA section
IS Length : 1448 bp

Ends


IR Length : 26/27

IRL : GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGGCTCCCGTGAG
IRR : GGTCGCGTCGCAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAACTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGTACTATCTAATTGTTTCGAACTTAGA8
ACAATGAATTAATATCTTGC0
CCAACAATTTAATGAATTGA0

DNA sequence

GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGGCTCCCGTGAGGAACGGGACGCCTCTGGTGTCCACCCAAGAGGTGTCCCATGCACGCCACA
ATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTTGCCGAGTTCATCACTGACCAGAACGTTGAATCAGTTCTTC
TCGAAGGACTCGTCGAGAGCCTCGACGCGGCTCGCGTCGAGGCGCTCTGTGGCGAGAAACACGCTCACGGCAATGGTGATCAGCGATTCCAACGCGCCGG
TACCGACACCCGCACAGCCGTCACAACCGCCGGTGAACACGAATTCGACCTTCACTACGTCGAAGATACCGCCGCTGACCACGACGAATCCAGCTACTTC
CGCCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTATCAGCAGGACATTGCGGCCAAGAGCGTCGATCTCGCCACCTCGCTCAGCTACCGTG
ATGCTGCTGACCACGGCGACGGCATCCTCTCGAAGATGCCGTCGCCGACCACCATTAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCCT
TCCAGACTGTGTCGCTGACACAGACGCTGACGCCGTTATTCCTGACGGCACGAAGTGTCACAGCCAAGACGACGACCGCACGTACCACTCCGTCCAAGCC
ACGCTCGGCGAAGACACCGCTGAGGAATCACGCTCTCTACTGGATCTCTCGGTGAACGCTGACTGGGACCAAACAGCAGCCGATCTCGATGATATCGACG
CAGTCACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTACGGCCTTTACCGACGAATACAGCGATCACCAACTCGATCTCGTCCACGT
CGGCCGAACGCTGGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCGACGGAACGAGATCGTCTCGGAGGTGATCGACGAGGTGTTCCATCTG
AAGAATTCGGTCGCCAAGCACCGTCCAAACGAGGAGTTCGCGGCGATCCGCGAACGGATCGCGCGAACGACCGAGCGTATCGAAAAGACAGCCTGGCAGT
TGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCGTCGATCGTGACGTTTGCCGAGCAGGCTGCCGAGGGGTTCGAGGTGCC
GTGGACCTCGAACCCCGTCGAACGGCTGATGGGGGAAGTCAGCAAGCGCTGTAAGAACCAGTGGATGCGCTGGACAACGGAGGGATTAGAGGCGATACTC
CAGCTTCGGCTGGTGAAGTACGCCGACCCAGAGTACTACCAGTCGTTCCTCGACGAATTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTCT
CAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa891429+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHATIDVRLTVSIDDDKTIPLATLAEFITDQNVESVLLEGLVESLDAARVEALCGEKHAHGNGDQRFQRAGTDTRTAVTTAGEHEFDLHYVEDTAADHDE
SSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGILSKMPSPTTINRRAREYGSKLKQFLPDCVADTDADAVIPDGTKCHSQDDDRTYH
SVQATLGEDTAEESRSLLDLSVNADWDQTAADLDDIDAVTDDATVVSDADDGIVTAFTDEYSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNEIVSEVIDE
VFHLKNSVAKHRPNEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAAEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTEGL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL

 

Blast result :
Comments
ISH6 is 97% aa similar to ISHma5.
The 8 bp preceding the 2nd element are identical to those following the 3rd in the genome.
References
1] DasSarma S. (1989) Can. J. Microbiol. 35, 65-72
2] Ng W.-L., Kothakota S., and DasSarma S. (1991) J. Bacteriol. 173, 1958-1964.
3] Halladay J.T., Donovan J.W., Jones J.G., Young D.C., and DasSarma S. (1993) Unpublised results.
4] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346