ISH6
- Family ISH6
- Group
Isoform Synonym(s) ISH6B
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002607 | Y | Halobacterium salinarum | Halobacterium salinarum R1 Haloarcula californiae ATCC 33799 Halorhabdus tiamatea SARL4B Halobacterium salinarum NRC-1 plasmid pNRC200 Halobacterium salinarum R1 plasmid pHS2 |
DNA section
IS Length : 1448 bp
Ends
IR Length : 26/27
IRL : GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGGCTCCCGTGAG
IRR : GGTCGCGTCGCAAAGCGGTCTAGAGTTTGCCTCTGGTGCTCTCAACTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTACTATCT | AATTGTTT | CGAACTTAGA | 8 |
ACAATGAATT | AATATCTTGC | 0 | |
CCAACAATTT | AATGAATTGA | 0 |
DNA sequence
GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGGCTCCCGTGAGGAACGGGACGCCTCTGGTGTCCACCCAAGAGGTGTCCCATGCACGCCACA
ATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTTGCCGAGTTCATCACTGACCAGAACGTTGAATCAGTTCTTC
TCGAAGGACTCGTCGAGAGCCTCGACGCGGCTCGCGTCGAGGCGCTCTGTGGCGAGAAACACGCTCACGGCAATGGTGATCAGCGATTCCAACGCGCCGG
TACCGACACCCGCACAGCCGTCACAACCGCCGGTGAACACGAATTCGACCTTCACTACGTCGAAGATACCGCCGCTGACCACGACGAATCCAGCTACTTC
CGCCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTATCAGCAGGACATTGCGGCCAAGAGCGTCGATCTCGCCACCTCGCTCAGCTACCGTG
ATGCTGCTGACCACGGCGACGGCATCCTCTCGAAGATGCCGTCGCCGACCACCATTAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCCT
TCCAGACTGTGTCGCTGACACAGACGCTGACGCCGTTATTCCTGACGGCACGAAGTGTCACAGCCAAGACGACGACCGCACGTACCACTCCGTCCAAGCC
ACGCTCGGCGAAGACACCGCTGAGGAATCACGCTCTCTACTGGATCTCTCGGTGAACGCTGACTGGGACCAAACAGCAGCCGATCTCGATGATATCGACG
CAGTCACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTACGGCCTTTACCGACGAATACAGCGATCACCAACTCGATCTCGTCCACGT
CGGCCGAACGCTGGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCGACGGAACGAGATCGTCTCGGAGGTGATCGACGAGGTGTTCCATCTG
AAGAATTCGGTCGCCAAGCACCGTCCAAACGAGGAGTTCGCGGCGATCCGCGAACGGATCGCGCGAACGACCGAGCGTATCGAAAAGACAGCCTGGCAGT
TGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCGTCGATCGTGACGTTTGCCGAGCAGGCTGCCGAGGGGTTCGAGGTGCC
GTGGACCTCGAACCCCGTCGAACGGCTGATGGGGGAAGTCAGCAAGCGCTGTAAGAACCAGTGGATGCGCTGGACAACGGAGGGATTAGAGGCGATACTC
CAGCTTCGGCTGGTGAAGTACGCCGACCCAGAGTACTACCAGTCGTTCCTCGACGAATTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTCT
CAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGACC
ATCGACGTGCGGTTGACCGTTAGCATCGACGACGACAAAACGATACCGCTGGCCACGCTTGCCGAGTTCATCACTGACCAGAACGTTGAATCAGTTCTTC
TCGAAGGACTCGTCGAGAGCCTCGACGCGGCTCGCGTCGAGGCGCTCTGTGGCGAGAAACACGCTCACGGCAATGGTGATCAGCGATTCCAACGCGCCGG
TACCGACACCCGCACAGCCGTCACAACCGCCGGTGAACACGAATTCGACCTTCACTACGTCGAAGATACCGCCGCTGACCACGACGAATCCAGCTACTTC
CGCCCCGTCGAAGATGTTCTCAGCTTCGACGGGCAAAACCGCTATCAGCAGGACATTGCGGCCAAGAGCGTCGATCTCGCCACCTCGCTCAGCTACCGTG
ATGCTGCTGACCACGGCGACGGCATCCTCTCGAAGATGCCGTCGCCGACCACCATTAACCGCCGCGCCAGAGAATACGGCAGCAAGCTCAAGCAGTTCCT
TCCAGACTGTGTCGCTGACACAGACGCTGACGCCGTTATTCCTGACGGCACGAAGTGTCACAGCCAAGACGACGACCGCACGTACCACTCCGTCCAAGCC
ACGCTCGGCGAAGACACCGCTGAGGAATCACGCTCTCTACTGGATCTCTCGGTGAACGCTGACTGGGACCAAACAGCAGCCGATCTCGATGATATCGACG
CAGTCACTGACGACGCGACGGTCGTCAGTGACGCTGATGACGGCATCGTTACGGCCTTTACCGACGAATACAGCGATCACCAACTCGATCTCGTCCACGT
CGGCCGAACGCTGGACTACAACCTCTGGGACGACGGCGTGTTCTCCTTGGATCGACGGAACGAGATCGTCTCGGAGGTGATCGACGAGGTGTTCCATCTG
AAGAATTCGGTCGCCAAGCACCGTCCAAACGAGGAGTTCGCGGCGATCCGCGAACGGATCGCGCGAACGACCGAGCGTATCGAAAAGACAGCCTGGCAGT
TGGATCAGTACGGGTCAGAGAAGGCTGCGGGGTATCTTCGGCGGTGGCTGCCGTCGATCGTGACGTTTGCCGAGCAGGCTGCCGAGGGGTTCGAGGTGCC
GTGGACCTCGAACCCCGTCGAACGGCTGATGGGGGAAGTCAGCAAGCGCTGTAAGAACCAGTGGATGCGCTGGACAACGGAGGGATTAGAGGCGATACTC
CAGCTTCGGCTGGTGAAGTACGCCGACCCAGAGTACTACCAGTCGTTCCTCGACGAATTGCTCCAGCGATCGACCAAAACAGCAATGAGCTGTGACCTCT
CAGTTGAGAGCACCAGAGGCAAACTCTAGACCGCTTTGCGACGCGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 89 | 1429 | + | No |
Chemistry : DDE
ORF sequence :
MHATIDVRLTVSIDDDKTIPLATLAEFITDQNVESVLLEGLVESLDAARVEALCGEKHAHGNGDQRFQRAGTDTRTAVTTAGEHEFDLHYVEDTAADHDE
SSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGILSKMPSPTTINRRAREYGSKLKQFLPDCVADTDADAVIPDGTKCHSQDDDRTYH
SVQATLGEDTAEESRSLLDLSVNADWDQTAADLDDIDAVTDDATVVSDADDGIVTAFTDEYSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNEIVSEVIDE
VFHLKNSVAKHRPNEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAAEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTEGL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL
SSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGILSKMPSPTTINRRAREYGSKLKQFLPDCVADTDADAVIPDGTKCHSQDDDRTYH
SVQATLGEDTAEESRSLLDLSVNADWDQTAADLDDIDAVTDDATVVSDADDGIVTAFTDEYSDHQLDLVHVGRTLDYNLWDDGVFSLDRRNEIVSEVIDE
VFHLKNSVAKHRPNEEFAAIRERIARTTERIEKTAWQLDQYGSEKAAGYLRRWLPSIVTFAEQAAEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTTEGL
EAILQLRLVKYADPEYYQSFLDELLQRSTKTAMSCDLSVESTRGKL
Blast result :
Comments
ISH6 is 97% aa similar to ISHma5.
The 8 bp preceding the 2nd element are identical to those following the 3rd in the genome.
The 8 bp preceding the 2nd element are identical to those following the 3rd in the genome.
References
1] DasSarma S. (1989) Can. J. Microbiol. 35, 65-72
2] Ng W.-L., Kothakota S., and DasSarma S. (1991) J. Bacteriol. 173, 1958-1964.
3] Halladay J.T., Donovan J.W., Jones J.G., Young D.C., and DasSarma S. (1993) Unpublised results.
4] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346
2] Ng W.-L., Kothakota S., and DasSarma S. (1991) J. Bacteriol. 173, 1958-1964.
3] Halladay J.T., Donovan J.W., Jones J.G., Young D.C., and DasSarma S. (1993) Unpublised results.
4] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346